Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00487 and MIT1002_00488 are separated by 12 nucleotides MIT1002_00488 and MIT1002_00489 are separated by 253 nucleotides MIT1002_00489 and MIT1002_00490 are separated by 123 nucleotides
MIT1002_00487: MIT1002_00487 - Glutaredoxin-3, at 532,071 to 532,331
_00487
MIT1002_00488: MIT1002_00488 - Thiosulfate sulfurtransferase GlpE, at 532,344 to 532,769
_00488
MIT1002_00489: MIT1002_00489 - Septal ring factor, at 533,023 to 534,186
_00489
MIT1002_00490: MIT1002_00490 - Divergent polysaccharide deacetylase, at 534,310 to 535,215
_00490
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 532.061 kb on - strand at 532.109 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.222 kb on - strand, within MIT1002_00487 at 532.324 kb on - strand at 532.369 kb on - strand at 532.369 kb on - strand at 532.461 kb on - strand, within MIT1002_00488 at 532.497 kb on + strand, within MIT1002_00488 at 532.537 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.570 kb on + strand, within MIT1002_00488 at 532.655 kb on - strand, within MIT1002_00488 at 532.772 kb on + strand at 532.772 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.773 kb on + strand at 532.780 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.781 kb on - strand at 532.801 kb on - strand at 532.803 kb on + strand at 532.850 kb on - strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.922 kb on + strand at 532.930 kb on - strand at 532.944 kb on - strand at 532.981 kb on + strand at 533.063 kb on - strand at 533.063 kb on - strand at 533.104 kb on - strand at 533.112 kb on - strand at 533.162 kb on + strand, within MIT1002_00489 at 533.176 kb on + strand, within MIT1002_00489 at 533.177 kb on - strand, within MIT1002_00489 at 533.195 kb on - strand, within MIT1002_00489 at 533.198 kb on + strand, within MIT1002_00489 at 533.260 kb on + strand, within MIT1002_00489 at 533.265 kb on + strand, within MIT1002_00489 at 533.268 kb on - strand, within MIT1002_00489 at 533.307 kb on + strand, within MIT1002_00489 at 533.379 kb on + strand, within MIT1002_00489 at 533.387 kb on - strand, within MIT1002_00489 at 533.387 kb on - strand, within MIT1002_00489 at 533.404 kb on + strand, within MIT1002_00489 at 533.412 kb on - strand, within MIT1002_00489 at 533.450 kb on + strand, within MIT1002_00489 at 533.450 kb on - strand, within MIT1002_00489 at 533.514 kb on + strand, within MIT1002_00489 at 533.522 kb on - strand, within MIT1002_00489 at 533.549 kb on + strand, within MIT1002_00489 at 533.679 kb on - strand, within MIT1002_00489 at 533.754 kb on - strand, within MIT1002_00489 at 533.831 kb on - strand, within MIT1002_00489 at 533.875 kb on + strand, within MIT1002_00489 at 533.875 kb on + strand, within MIT1002_00489 at 533.883 kb on - strand, within MIT1002_00489 at 533.883 kb on - strand, within MIT1002_00489 at 533.933 kb on + strand, within MIT1002_00489 at 533.958 kb on - strand, within MIT1002_00489 at 533.983 kb on - strand, within MIT1002_00489 at 533.983 kb on - strand, within MIT1002_00489 at 533.983 kb on - strand, within MIT1002_00489 at 534.010 kb on + strand, within MIT1002_00489 at 534.010 kb on + strand, within MIT1002_00489 at 534.010 kb on + strand, within MIT1002_00489 at 534.010 kb on + strand, within MIT1002_00489 at 534.010 kb on + strand, within MIT1002_00489 at 534.018 kb on - strand, within MIT1002_00489 at 534.020 kb on - strand, within MIT1002_00489 at 534.088 kb on + strand at 534.114 kb on + strand at 534.179 kb on - strand at 534.190 kb on + strand at 534.198 kb on - strand at 534.198 kb on - strand at 534.260 kb on + strand at 534.263 kb on + strand at 534.266 kb on - strand at 534.268 kb on - strand at 534.543 kb on + strand, within MIT1002_00490 at 534.548 kb on + strand, within MIT1002_00490 at 534.551 kb on - strand, within MIT1002_00490 at 534.551 kb on - strand, within MIT1002_00490 at 534.551 kb on - strand, within MIT1002_00490 at 534.551 kb on - strand, within MIT1002_00490 at 534.584 kb on + strand, within MIT1002_00490 at 534.589 kb on + strand, within MIT1002_00490 at 534.592 kb on - strand, within MIT1002_00490 at 534.614 kb on - strand, within MIT1002_00490 at 534.648 kb on - strand, within MIT1002_00490 at 534.648 kb on - strand, within MIT1002_00490 at 534.670 kb on - strand, within MIT1002_00490 at 534.773 kb on + strand, within MIT1002_00490 at 534.791 kb on - strand, within MIT1002_00490 at 534.809 kb on + strand, within MIT1002_00490 at 534.816 kb on - strand, within MIT1002_00490 at 534.822 kb on - strand, within MIT1002_00490 at 534.899 kb on - strand, within MIT1002_00490 at 534.973 kb on + strand, within MIT1002_00490 at 534.998 kb on + strand, within MIT1002_00490 at 534.998 kb on + strand, within MIT1002_00490 at 535.006 kb on - strand, within MIT1002_00490 at 535.011 kb on - strand, within MIT1002_00490 at 535.011 kb on - strand, within MIT1002_00490 at 535.011 kb on - strand, within MIT1002_00490 at 535.012 kb on - strand, within MIT1002_00490 at 535.089 kb on + strand, within MIT1002_00490 at 535.102 kb on + strand, within MIT1002_00490 at 535.112 kb on + strand, within MIT1002_00490 at 535.120 kb on - strand, within MIT1002_00490 at 535.145 kb on + strand at 535.156 kb on + strand at 535.156 kb on + strand at 535.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 532,061 - -2.0 532,109 - MIT1002_00487 0.15 -0.4 532,222 - MIT1002_00487 0.58 -2.3 532,222 - MIT1002_00487 0.58 +0.5 532,222 - MIT1002_00487 0.58 +0.8 532,222 - MIT1002_00487 0.58 -0.7 532,324 - +1.3 532,369 - -2.4 532,369 - -1.2 532,461 - MIT1002_00488 0.27 -1.0 532,497 + MIT1002_00488 0.36 +0.8 532,537 + MIT1002_00488 0.45 -0.1 532,570 + MIT1002_00488 0.53 -0.6 532,570 + MIT1002_00488 0.53 -2.1 532,570 + MIT1002_00488 0.53 -1.2 532,570 + MIT1002_00488 0.53 +0.2 532,655 - MIT1002_00488 0.73 +0.6 532,772 + -1.8 532,772 + -1.0 532,773 + -0.5 532,773 + +0.5 532,773 + +0.8 532,773 + +1.6 532,773 + -1.2 532,780 - +1.0 532,781 - +0.5 532,781 - -1.8 532,781 - -0.5 532,781 - -0.9 532,801 - -0.8 532,803 + +0.2 532,850 - -2.4 532,922 + -0.0 532,922 + -0.0 532,922 + +2.3 532,922 + -1.0 532,922 + +0.8 532,930 - -0.0 532,944 - +0.2 532,981 + +0.3 533,063 - -0.3 533,063 - -0.5 533,104 - -0.2 533,112 - +0.5 533,162 + MIT1002_00489 0.12 -0.9 533,176 + MIT1002_00489 0.13 -0.9 533,177 - MIT1002_00489 0.13 -1.7 533,195 - MIT1002_00489 0.15 -0.5 533,198 + MIT1002_00489 0.15 -1.4 533,260 + MIT1002_00489 0.20 +0.8 533,265 + MIT1002_00489 0.21 -0.4 533,268 - MIT1002_00489 0.21 +0.3 533,307 + MIT1002_00489 0.24 +0.6 533,379 + MIT1002_00489 0.31 -0.7 533,387 - MIT1002_00489 0.31 +0.9 533,387 - MIT1002_00489 0.31 +0.0 533,404 + MIT1002_00489 0.33 +0.7 533,412 - MIT1002_00489 0.33 -1.0 533,450 + MIT1002_00489 0.37 +0.6 533,450 - MIT1002_00489 0.37 +1.0 533,514 + MIT1002_00489 0.42 +0.8 533,522 - MIT1002_00489 0.43 +0.6 533,549 + MIT1002_00489 0.45 -0.1 533,679 - MIT1002_00489 0.56 -1.6 533,754 - MIT1002_00489 0.63 -0.8 533,831 - MIT1002_00489 0.69 -0.2 533,875 + MIT1002_00489 0.73 +0.2 533,875 + MIT1002_00489 0.73 +1.8 533,883 - MIT1002_00489 0.74 +1.1 533,883 - MIT1002_00489 0.74 +0.1 533,933 + MIT1002_00489 0.78 +0.4 533,958 - MIT1002_00489 0.80 +0.0 533,983 - MIT1002_00489 0.82 -0.4 533,983 - MIT1002_00489 0.82 +0.7 533,983 - MIT1002_00489 0.82 +2.2 534,010 + MIT1002_00489 0.85 +2.0 534,010 + MIT1002_00489 0.85 +0.9 534,010 + MIT1002_00489 0.85 +0.7 534,010 + MIT1002_00489 0.85 +0.7 534,010 + MIT1002_00489 0.85 +1.5 534,018 - MIT1002_00489 0.85 +0.8 534,020 - MIT1002_00489 0.86 -0.4 534,088 + -0.5 534,114 + -1.6 534,179 - +0.8 534,190 + +0.1 534,198 - +0.4 534,198 - +2.5 534,260 + -3.0 534,263 + -0.5 534,266 - -1.6 534,268 - -1.1 534,543 + MIT1002_00490 0.26 -1.1 534,548 + MIT1002_00490 0.26 +2.8 534,551 - MIT1002_00490 0.27 +1.0 534,551 - MIT1002_00490 0.27 +0.4 534,551 - MIT1002_00490 0.27 -1.7 534,551 - MIT1002_00490 0.27 +0.0 534,584 + MIT1002_00490 0.30 -0.7 534,589 + MIT1002_00490 0.31 -1.6 534,592 - MIT1002_00490 0.31 +0.3 534,614 - MIT1002_00490 0.34 +0.0 534,648 - MIT1002_00490 0.37 +1.5 534,648 - MIT1002_00490 0.37 +0.2 534,670 - MIT1002_00490 0.40 -2.8 534,773 + MIT1002_00490 0.51 +0.5 534,791 - MIT1002_00490 0.53 +0.3 534,809 + MIT1002_00490 0.55 +1.6 534,816 - MIT1002_00490 0.56 +1.3 534,822 - MIT1002_00490 0.57 +0.5 534,899 - MIT1002_00490 0.65 -0.1 534,973 + MIT1002_00490 0.73 +0.5 534,998 + MIT1002_00490 0.76 -0.5 534,998 + MIT1002_00490 0.76 -1.2 535,006 - MIT1002_00490 0.77 +0.9 535,011 - MIT1002_00490 0.77 +0.3 535,011 - MIT1002_00490 0.77 +0.8 535,011 - MIT1002_00490 0.77 +0.2 535,012 - MIT1002_00490 0.77 -1.9 535,089 + MIT1002_00490 0.86 +3.6 535,102 + MIT1002_00490 0.87 -0.0 535,112 + MIT1002_00490 0.89 -0.6 535,120 - MIT1002_00490 0.89 -0.8 535,145 + -1.1 535,156 + +0.4 535,156 + -1.1 535,156 + -0.9
Or see this region's nucleotide sequence