Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00484

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00483 and MIT1002_00484 are separated by 159 nucleotidesMIT1002_00484 and MIT1002_00485 are separated by 90 nucleotides MIT1002_00483: MIT1002_00483 - Outer membrane protein OprM precursor, at 528,405 to 529,814 _00483 MIT1002_00484: MIT1002_00484 - hypothetical protein, at 529,974 to 530,366 _00484 MIT1002_00485: MIT1002_00485 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 530,457 to 531,488 _00485 Position (kb) 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 528.976 kb on - strand, within MIT1002_00483at 528.987 kb on + strand, within MIT1002_00483at 528.988 kb on - strand, within MIT1002_00483at 529.000 kb on - strand, within MIT1002_00483at 529.051 kb on + strand, within MIT1002_00483at 529.077 kb on + strand, within MIT1002_00483at 529.095 kb on - strand, within MIT1002_00483at 529.101 kb on - strand, within MIT1002_00483at 529.120 kb on + strand, within MIT1002_00483at 529.126 kb on + strand, within MIT1002_00483at 529.159 kb on - strand, within MIT1002_00483at 529.183 kb on + strand, within MIT1002_00483at 529.240 kb on - strand, within MIT1002_00483at 529.253 kb on - strand, within MIT1002_00483at 529.256 kb on - strand, within MIT1002_00483at 529.282 kb on - strand, within MIT1002_00483at 529.289 kb on + strand, within MIT1002_00483at 529.409 kb on + strand, within MIT1002_00483at 529.416 kb on + strand, within MIT1002_00483at 529.417 kb on + strand, within MIT1002_00483at 529.419 kb on - strand, within MIT1002_00483at 529.449 kb on - strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.466 kb on + strand, within MIT1002_00483at 529.473 kb on - strand, within MIT1002_00483at 529.484 kb on - strand, within MIT1002_00483at 529.527 kb on - strand, within MIT1002_00483at 529.604 kb on + strand, within MIT1002_00483at 529.634 kb on + strand, within MIT1002_00483at 529.642 kb on + strand, within MIT1002_00483at 529.706 kb on - strandat 529.750 kb on - strandat 529.752 kb on + strandat 529.780 kb on + strandat 529.792 kb on - strandat 529.794 kb on + strandat 529.848 kb on + strandat 529.887 kb on + strandat 529.890 kb on - strandat 529.895 kb on - strandat 529.902 kb on + strandat 529.927 kb on + strandat 529.935 kb on - strandat 529.969 kb on + strandat 530.135 kb on - strand, within MIT1002_00484at 530.172 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.182 kb on + strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.190 kb on - strand, within MIT1002_00484at 530.225 kb on - strand, within MIT1002_00484at 530.249 kb on - strand, within MIT1002_00484at 530.264 kb on + strand, within MIT1002_00484at 530.308 kb on - strand, within MIT1002_00484at 530.332 kb on + strandat 530.332 kb on + strandat 530.375 kb on - strandat 530.450 kb on + strandat 530.460 kb on - strandat 530.467 kb on + strandat 530.523 kb on + strandat 530.531 kb on - strandat 530.541 kb on - strandat 530.541 kb on - strandat 530.613 kb on - strand, within MIT1002_00485at 530.623 kb on + strand, within MIT1002_00485at 530.785 kb on + strand, within MIT1002_00485at 530.795 kb on - strand, within MIT1002_00485at 530.853 kb on + strand, within MIT1002_00485at 530.861 kb on - strand, within MIT1002_00485at 530.941 kb on - strand, within MIT1002_00485at 530.950 kb on - strand, within MIT1002_00485at 530.950 kb on - strand, within MIT1002_00485at 530.960 kb on - strand, within MIT1002_00485at 531.015 kb on + strand, within MIT1002_00485at 531.015 kb on + strand, within MIT1002_00485at 531.023 kb on - strand, within MIT1002_00485at 531.023 kb on - strand, within MIT1002_00485at 531.097 kb on + strand, within MIT1002_00485at 531.166 kb on + strand, within MIT1002_00485at 531.179 kb on + strand, within MIT1002_00485at 531.197 kb on - strand, within MIT1002_00485at 531.219 kb on - strand, within MIT1002_00485at 531.283 kb on - strand, within MIT1002_00485at 531.336 kb on + strand, within MIT1002_00485at 531.364 kb on + strand, within MIT1002_00485

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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528,976 - MIT1002_00483 0.40 -0.1
528,987 + MIT1002_00483 0.41 +0.2
528,988 - MIT1002_00483 0.41 +1.4
529,000 - MIT1002_00483 0.42 -1.2
529,051 + MIT1002_00483 0.46 +0.3
529,077 + MIT1002_00483 0.48 -1.2
529,095 - MIT1002_00483 0.49 -1.1
529,101 - MIT1002_00483 0.49 -1.0
529,120 + MIT1002_00483 0.51 +2.2
529,126 + MIT1002_00483 0.51 -0.7
529,159 - MIT1002_00483 0.53 -0.5
529,183 + MIT1002_00483 0.55 -0.9
529,240 - MIT1002_00483 0.59 -0.9
529,253 - MIT1002_00483 0.60 +0.8
529,256 - MIT1002_00483 0.60 +0.8
529,282 - MIT1002_00483 0.62 -0.6
529,289 + MIT1002_00483 0.63 +0.6
529,409 + MIT1002_00483 0.71 +0.5
529,416 + MIT1002_00483 0.72 +1.0
529,417 + MIT1002_00483 0.72 +1.3
529,419 - MIT1002_00483 0.72 +0.4
529,449 - MIT1002_00483 0.74 -0.9
529,466 + MIT1002_00483 0.75 +1.6
529,466 + MIT1002_00483 0.75 +0.3
529,466 + MIT1002_00483 0.75 -1.0
529,473 - MIT1002_00483 0.76 -0.6
529,484 - MIT1002_00483 0.77 -0.9
529,527 - MIT1002_00483 0.80 +0.5
529,604 + MIT1002_00483 0.85 +0.2
529,634 + MIT1002_00483 0.87 +0.3
529,642 + MIT1002_00483 0.88 +0.8
529,706 - -1.5
529,750 - -0.5
529,752 + -1.0
529,780 + -0.5
529,792 - -2.1
529,794 + +0.2
529,848 + +2.0
529,887 + +0.2
529,890 - -0.7
529,895 - -1.5
529,902 + +4.6
529,927 + +0.9
529,935 - -0.9
529,969 + -0.3
530,135 - MIT1002_00484 0.41 -0.1
530,172 + MIT1002_00484 0.50 +0.6
530,182 + MIT1002_00484 0.53 +1.6
530,182 + MIT1002_00484 0.53 -1.4
530,182 + MIT1002_00484 0.53 -1.7
530,182 + MIT1002_00484 0.53 -0.2
530,182 + MIT1002_00484 0.53 +0.2
530,182 + MIT1002_00484 0.53 -2.1
530,182 + MIT1002_00484 0.53 +1.7
530,182 + MIT1002_00484 0.53 +0.2
530,182 + MIT1002_00484 0.53 -1.9
530,182 + MIT1002_00484 0.53 +0.7
530,182 + MIT1002_00484 0.53 -2.4
530,182 + MIT1002_00484 0.53 -1.2
530,190 - MIT1002_00484 0.55 -0.3
530,190 - MIT1002_00484 0.55 -1.2
530,190 - MIT1002_00484 0.55 +2.6
530,190 - MIT1002_00484 0.55 +0.1
530,190 - MIT1002_00484 0.55 -0.5
530,190 - MIT1002_00484 0.55 +0.5
530,190 - MIT1002_00484 0.55 -1.1
530,190 - MIT1002_00484 0.55 -2.0
530,190 - MIT1002_00484 0.55 -0.5
530,190 - MIT1002_00484 0.55 -1.0
530,190 - MIT1002_00484 0.55 +0.6
530,190 - MIT1002_00484 0.55 -0.1
530,190 - MIT1002_00484 0.55 +0.8
530,190 - MIT1002_00484 0.55 -1.1
530,190 - MIT1002_00484 0.55 -1.1
530,190 - MIT1002_00484 0.55 +3.0
530,190 - MIT1002_00484 0.55 -2.8
530,225 - MIT1002_00484 0.64 -2.2
530,249 - MIT1002_00484 0.70 +0.3
530,264 + MIT1002_00484 0.74 -0.5
530,308 - MIT1002_00484 0.85 -1.7
530,332 + +0.4
530,332 + -0.2
530,375 - -0.9
530,450 + -0.2
530,460 - -2.6
530,467 + -3.5
530,523 + -1.7
530,531 - -1.4
530,541 - -1.0
530,541 - +0.5
530,613 - MIT1002_00485 0.15 +1.6
530,623 + MIT1002_00485 0.16 -1.9
530,785 + MIT1002_00485 0.32 -0.5
530,795 - MIT1002_00485 0.33 -2.5
530,853 + MIT1002_00485 0.38 +1.6
530,861 - MIT1002_00485 0.39 -3.0
530,941 - MIT1002_00485 0.47 -1.9
530,950 - MIT1002_00485 0.48 -2.0
530,950 - MIT1002_00485 0.48 -3.2
530,960 - MIT1002_00485 0.49 -0.5
531,015 + MIT1002_00485 0.54 -2.0
531,015 + MIT1002_00485 0.54 -2.7
531,023 - MIT1002_00485 0.55 -2.3
531,023 - MIT1002_00485 0.55 -1.2
531,097 + MIT1002_00485 0.62 -3.1
531,166 + MIT1002_00485 0.69 -0.5
531,179 + MIT1002_00485 0.70 -2.0
531,197 - MIT1002_00485 0.72 -2.4
531,219 - MIT1002_00485 0.74 +0.2
531,283 - MIT1002_00485 0.80 -1.0
531,336 + MIT1002_00485 0.85 -1.1
531,364 + MIT1002_00485 0.88 -0.3

Or see this region's nucleotide sequence