Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00447 and MIT1002_00448 are separated by 30 nucleotides MIT1002_00448 and MIT1002_00449 are separated by 270 nucleotides MIT1002_00449 and MIT1002_00450 are separated by 2 nucleotides MIT1002_00450 and MIT1002_00451 overlap by 4 nucleotides
MIT1002_00447: MIT1002_00447 - 3-dehydroquinate synthase, at 488,445 to 489,512
_00447
MIT1002_00448: MIT1002_00448 - Shikimate kinase 1, at 489,543 to 490,058
_00448
MIT1002_00449: MIT1002_00449 - Type IV pilus biogenesis and competence protein PilQ precursor, at 490,329 to 492,101
_00449
MIT1002_00450: MIT1002_00450 - Pilus assembly protein, PilP, at 492,104 to 492,631
_00450
MIT1002_00451: MIT1002_00451 - Pilus assembly protein, PilO, at 492,628 to 493,239
_00451
Position (kb) 490
491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 490.160 kb on - strand at 490.168 kb on - strand at 490.240 kb on + strand at 490.240 kb on + strand at 490.248 kb on - strand at 490.356 kb on - strand at 490.373 kb on - strand at 490.393 kb on + strand at 490.479 kb on + strand at 490.493 kb on + strand at 490.496 kb on - strand at 490.501 kb on - strand at 490.591 kb on + strand, within MIT1002_00449 at 490.614 kb on + strand, within MIT1002_00449 at 490.636 kb on + strand, within MIT1002_00449 at 490.685 kb on + strand, within MIT1002_00449 at 490.693 kb on - strand, within MIT1002_00449 at 490.826 kb on + strand, within MIT1002_00449 at 490.834 kb on - strand, within MIT1002_00449 at 490.841 kb on - strand, within MIT1002_00449 at 490.901 kb on - strand, within MIT1002_00449 at 490.908 kb on - strand, within MIT1002_00449 at 490.937 kb on + strand, within MIT1002_00449 at 490.937 kb on - strand, within MIT1002_00449 at 490.964 kb on + strand, within MIT1002_00449 at 490.971 kb on - strand, within MIT1002_00449 at 490.971 kb on - strand, within MIT1002_00449 at 490.984 kb on + strand, within MIT1002_00449 at 491.041 kb on - strand, within MIT1002_00449 at 491.123 kb on + strand, within MIT1002_00449 at 491.131 kb on - strand, within MIT1002_00449 at 491.132 kb on + strand, within MIT1002_00449 at 491.133 kb on + strand, within MIT1002_00449 at 491.176 kb on + strand, within MIT1002_00449 at 491.176 kb on + strand, within MIT1002_00449 at 491.176 kb on + strand, within MIT1002_00449 at 491.176 kb on + strand, within MIT1002_00449 at 491.220 kb on + strand, within MIT1002_00449 at 491.245 kb on - strand, within MIT1002_00449 at 491.292 kb on + strand, within MIT1002_00449 at 491.327 kb on - strand, within MIT1002_00449 at 491.376 kb on + strand, within MIT1002_00449 at 491.403 kb on - strand, within MIT1002_00449 at 491.497 kb on + strand, within MIT1002_00449 at 491.497 kb on + strand, within MIT1002_00449 at 491.497 kb on + strand, within MIT1002_00449 at 491.497 kb on + strand, within MIT1002_00449 at 491.497 kb on + strand, within MIT1002_00449 at 491.498 kb on - strand, within MIT1002_00449 at 491.505 kb on - strand, within MIT1002_00449 at 491.505 kb on - strand, within MIT1002_00449 at 491.505 kb on - strand, within MIT1002_00449 at 491.505 kb on - strand, within MIT1002_00449 at 491.608 kb on + strand, within MIT1002_00449 at 491.613 kb on + strand, within MIT1002_00449 at 491.644 kb on - strand, within MIT1002_00449 at 491.654 kb on - strand, within MIT1002_00449 at 491.706 kb on + strand, within MIT1002_00449 at 491.714 kb on - strand, within MIT1002_00449 at 491.789 kb on + strand, within MIT1002_00449 at 491.858 kb on + strand, within MIT1002_00449 at 491.881 kb on + strand, within MIT1002_00449 at 491.881 kb on - strand, within MIT1002_00449 at 491.894 kb on - strand, within MIT1002_00449 at 491.921 kb on - strand, within MIT1002_00449 at 492.039 kb on - strand at 492.040 kb on + strand at 492.048 kb on - strand at 492.109 kb on - strand at 492.115 kb on - strand at 492.121 kb on + strand at 492.171 kb on + strand, within MIT1002_00450 at 492.171 kb on + strand, within MIT1002_00450 at 492.179 kb on - strand, within MIT1002_00450 at 492.291 kb on + strand, within MIT1002_00450 at 492.303 kb on + strand, within MIT1002_00450 at 492.304 kb on - strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.371 kb on - strand, within MIT1002_00450 at 492.426 kb on + strand, within MIT1002_00450 at 492.484 kb on - strand, within MIT1002_00450 at 492.484 kb on - strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.554 kb on + strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.562 kb on - strand, within MIT1002_00450 at 492.569 kb on + strand, within MIT1002_00450 at 492.610 kb on - strand at 492.649 kb on - strand at 492.649 kb on - strand at 492.715 kb on - strand, within MIT1002_00451 at 492.743 kb on - strand, within MIT1002_00451 at 492.748 kb on + strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.795 kb on - strand, within MIT1002_00451 at 492.816 kb on - strand, within MIT1002_00451 at 492.874 kb on + strand, within MIT1002_00451 at 492.875 kb on - strand, within MIT1002_00451 at 492.879 kb on + strand, within MIT1002_00451 at 492.879 kb on + strand, within MIT1002_00451 at 492.947 kb on + strand, within MIT1002_00451 at 492.957 kb on - strand, within MIT1002_00451 at 492.959 kb on + strand, within MIT1002_00451 at 493.019 kb on + strand, within MIT1002_00451 at 493.045 kb on + strand, within MIT1002_00451
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 490,160 - +1.3 490,168 - -0.9 490,240 + -0.6 490,240 + -2.1 490,248 - +0.6 490,356 - -1.2 490,373 - +1.2 490,393 + -0.0 490,479 + -0.8 490,493 + -1.1 490,496 - -1.5 490,501 - -1.3 490,591 + MIT1002_00449 0.15 -0.3 490,614 + MIT1002_00449 0.16 +0.5 490,636 + MIT1002_00449 0.17 -2.0 490,685 + MIT1002_00449 0.20 -0.7 490,693 - MIT1002_00449 0.21 -0.2 490,826 + MIT1002_00449 0.28 +1.4 490,834 - MIT1002_00449 0.28 -1.7 490,841 - MIT1002_00449 0.29 -1.3 490,901 - MIT1002_00449 0.32 -0.7 490,908 - MIT1002_00449 0.33 +2.0 490,937 + MIT1002_00449 0.34 -0.2 490,937 - MIT1002_00449 0.34 +1.7 490,964 + MIT1002_00449 0.36 -0.0 490,971 - MIT1002_00449 0.36 -0.6 490,971 - MIT1002_00449 0.36 -1.8 490,984 + MIT1002_00449 0.37 +0.6 491,041 - MIT1002_00449 0.40 -0.1 491,123 + MIT1002_00449 0.45 +0.6 491,131 - MIT1002_00449 0.45 -0.7 491,132 + MIT1002_00449 0.45 -1.1 491,133 + MIT1002_00449 0.45 -2.3 491,176 + MIT1002_00449 0.48 -1.3 491,176 + MIT1002_00449 0.48 +0.3 491,176 + MIT1002_00449 0.48 +0.1 491,176 + MIT1002_00449 0.48 +0.1 491,220 + MIT1002_00449 0.50 +0.1 491,245 - MIT1002_00449 0.52 -1.5 491,292 + MIT1002_00449 0.54 -2.4 491,327 - MIT1002_00449 0.56 -0.8 491,376 + MIT1002_00449 0.59 -0.5 491,403 - MIT1002_00449 0.61 -1.4 491,497 + MIT1002_00449 0.66 +0.3 491,497 + MIT1002_00449 0.66 +0.1 491,497 + MIT1002_00449 0.66 -0.5 491,497 + MIT1002_00449 0.66 +0.9 491,497 + MIT1002_00449 0.66 -2.5 491,498 - MIT1002_00449 0.66 -0.3 491,505 - MIT1002_00449 0.66 +0.3 491,505 - MIT1002_00449 0.66 +1.6 491,505 - MIT1002_00449 0.66 +2.0 491,505 - MIT1002_00449 0.66 -0.4 491,608 + MIT1002_00449 0.72 +1.1 491,613 + MIT1002_00449 0.72 -1.0 491,644 - MIT1002_00449 0.74 -0.3 491,654 - MIT1002_00449 0.75 -0.5 491,706 + MIT1002_00449 0.78 +1.0 491,714 - MIT1002_00449 0.78 +0.4 491,789 + MIT1002_00449 0.82 -0.9 491,858 + MIT1002_00449 0.86 +0.4 491,881 + MIT1002_00449 0.88 -3.0 491,881 - MIT1002_00449 0.88 +1.3 491,894 - MIT1002_00449 0.88 +0.1 491,921 - MIT1002_00449 0.90 +0.8 492,039 - -0.8 492,040 + -0.5 492,048 - +2.0 492,109 - -0.9 492,115 - -1.2 492,121 + -1.5 492,171 + MIT1002_00450 0.13 +0.0 492,171 + MIT1002_00450 0.13 +1.7 492,179 - MIT1002_00450 0.14 +0.2 492,291 + MIT1002_00450 0.35 -1.6 492,303 + MIT1002_00450 0.38 -0.1 492,304 - MIT1002_00450 0.38 +1.1 492,328 + MIT1002_00450 0.42 +0.8 492,328 + MIT1002_00450 0.42 -0.4 492,328 + MIT1002_00450 0.42 +1.0 492,328 + MIT1002_00450 0.42 -0.7 492,328 + MIT1002_00450 0.42 -0.6 492,328 + MIT1002_00450 0.42 -0.9 492,328 + MIT1002_00450 0.42 -1.6 492,336 - MIT1002_00450 0.44 +0.1 492,336 - MIT1002_00450 0.44 +1.6 492,336 - MIT1002_00450 0.44 -0.8 492,336 - MIT1002_00450 0.44 -0.5 492,371 - MIT1002_00450 0.51 -1.9 492,426 + MIT1002_00450 0.61 -0.9 492,484 - MIT1002_00450 0.72 +1.8 492,484 - MIT1002_00450 0.72 +0.3 492,535 + MIT1002_00450 0.82 +0.8 492,535 + MIT1002_00450 0.82 +0.5 492,535 + MIT1002_00450 0.82 +1.0 492,535 + MIT1002_00450 0.82 -0.3 492,543 - MIT1002_00450 0.83 -0.0 492,543 - MIT1002_00450 0.83 -0.1 492,543 - MIT1002_00450 0.83 -0.2 492,543 - MIT1002_00450 0.83 +1.6 492,543 - MIT1002_00450 0.83 +0.7 492,543 - MIT1002_00450 0.83 -0.1 492,543 - MIT1002_00450 0.83 +0.8 492,543 - MIT1002_00450 0.83 -0.4 492,543 - MIT1002_00450 0.83 +0.1 492,543 - MIT1002_00450 0.83 -1.2 492,543 - MIT1002_00450 0.83 -2.4 492,543 - MIT1002_00450 0.83 +0.2 492,543 - MIT1002_00450 0.83 -0.1 492,543 - MIT1002_00450 0.83 +0.1 492,543 - MIT1002_00450 0.83 -1.2 492,543 - MIT1002_00450 0.83 +0.1 492,543 - MIT1002_00450 0.83 -0.9 492,543 - MIT1002_00450 0.83 +1.3 492,543 - MIT1002_00450 0.83 +0.5 492,547 + MIT1002_00450 0.84 +0.8 492,547 + MIT1002_00450 0.84 -3.1 492,547 + MIT1002_00450 0.84 -1.3 492,547 + MIT1002_00450 0.84 +2.3 492,547 + MIT1002_00450 0.84 +1.3 492,547 + MIT1002_00450 0.84 -1.3 492,547 + MIT1002_00450 0.84 +1.6 492,547 + MIT1002_00450 0.84 -0.6 492,547 + MIT1002_00450 0.84 -0.3 492,554 + MIT1002_00450 0.85 +0.3 492,555 - MIT1002_00450 0.85 -0.2 492,555 - MIT1002_00450 0.85 +0.6 492,555 - MIT1002_00450 0.85 +0.0 492,555 - MIT1002_00450 0.85 -0.4 492,555 - MIT1002_00450 0.85 -1.7 492,555 - MIT1002_00450 0.85 +3.3 492,555 - MIT1002_00450 0.85 -0.7 492,555 - MIT1002_00450 0.85 -0.4 492,555 - MIT1002_00450 0.85 -1.3 492,555 - MIT1002_00450 0.85 +1.6 492,555 - MIT1002_00450 0.85 +1.8 492,555 - MIT1002_00450 0.85 -0.3 492,555 - MIT1002_00450 0.85 +0.4 492,562 - MIT1002_00450 0.87 +0.1 492,569 + MIT1002_00450 0.88 -0.5 492,610 - +0.1 492,649 - -0.3 492,649 - +0.4 492,715 - MIT1002_00451 0.14 -1.6 492,743 - MIT1002_00451 0.19 +1.6 492,748 + MIT1002_00451 0.20 +0.6 492,756 - MIT1002_00451 0.21 -0.2 492,756 - MIT1002_00451 0.21 -0.9 492,756 - MIT1002_00451 0.21 -2.9 492,756 - MIT1002_00451 0.21 -1.4 492,795 - MIT1002_00451 0.27 -0.2 492,816 - MIT1002_00451 0.31 +0.9 492,874 + MIT1002_00451 0.40 -0.4 492,875 - MIT1002_00451 0.40 -1.9 492,879 + MIT1002_00451 0.41 -0.4 492,879 + MIT1002_00451 0.41 -2.4 492,947 + MIT1002_00451 0.52 -1.0 492,957 - MIT1002_00451 0.54 +0.1 492,959 + MIT1002_00451 0.54 +0.4 493,019 + MIT1002_00451 0.64 +0.2 493,045 + MIT1002_00451 0.68 +1.0
Or see this region's nucleotide sequence