Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00359

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00358 and MIT1002_00359 overlap by 4 nucleotidesMIT1002_00359 and MIT1002_00360 overlap by 8 nucleotides MIT1002_00358: MIT1002_00358 - hypothetical protein, at 385,504 to 387,405 _00358 MIT1002_00359: MIT1002_00359 - hypothetical protein, at 387,402 to 388,331 _00359 MIT1002_00360: MIT1002_00360 - trans-aconitate 2-methyltransferase, at 388,324 to 389,388 _00360 Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 386.461 kb on + strand, within MIT1002_00358at 386.469 kb on - strand, within MIT1002_00358at 386.472 kb on + strand, within MIT1002_00358at 386.480 kb on - strand, within MIT1002_00358at 386.538 kb on + strand, within MIT1002_00358at 386.550 kb on - strand, within MIT1002_00358at 386.576 kb on + strand, within MIT1002_00358at 386.579 kb on - strand, within MIT1002_00358at 386.579 kb on - strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.599 kb on + strand, within MIT1002_00358at 386.607 kb on - strand, within MIT1002_00358at 386.607 kb on - strand, within MIT1002_00358at 386.757 kb on - strand, within MIT1002_00358at 386.878 kb on - strand, within MIT1002_00358at 386.919 kb on - strand, within MIT1002_00358at 387.003 kb on - strand, within MIT1002_00358at 387.015 kb on + strand, within MIT1002_00358at 387.114 kb on - strand, within MIT1002_00358at 387.288 kb on + strandat 387.288 kb on + strandat 387.461 kb on + strandat 387.498 kb on + strand, within MIT1002_00359at 387.513 kb on - strand, within MIT1002_00359at 387.515 kb on + strand, within MIT1002_00359at 387.517 kb on + strand, within MIT1002_00359at 387.517 kb on + strand, within MIT1002_00359at 387.525 kb on - strand, within MIT1002_00359at 387.539 kb on + strand, within MIT1002_00359at 387.549 kb on + strand, within MIT1002_00359at 387.549 kb on - strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.551 kb on + strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.559 kb on - strand, within MIT1002_00359at 387.586 kb on + strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.594 kb on - strand, within MIT1002_00359at 387.598 kb on + strand, within MIT1002_00359at 387.598 kb on + strand, within MIT1002_00359at 387.605 kb on + strand, within MIT1002_00359at 387.605 kb on + strand, within MIT1002_00359at 387.613 kb on - strand, within MIT1002_00359at 387.613 kb on - strand, within MIT1002_00359at 387.621 kb on - strand, within MIT1002_00359at 387.628 kb on + strand, within MIT1002_00359at 387.658 kb on - strand, within MIT1002_00359at 387.694 kb on + strand, within MIT1002_00359at 387.745 kb on + strand, within MIT1002_00359at 387.753 kb on - strand, within MIT1002_00359at 387.759 kb on - strand, within MIT1002_00359at 387.763 kb on - strand, within MIT1002_00359at 387.768 kb on + strand, within MIT1002_00359at 387.786 kb on - strand, within MIT1002_00359at 387.796 kb on - strand, within MIT1002_00359at 387.851 kb on - strand, within MIT1002_00359at 387.874 kb on - strand, within MIT1002_00359at 387.952 kb on + strand, within MIT1002_00359at 388.112 kb on + strand, within MIT1002_00359at 388.137 kb on - strand, within MIT1002_00359at 388.238 kb on + strand, within MIT1002_00359at 388.238 kb on + strand, within MIT1002_00359at 388.251 kb on - strandat 388.320 kb on - strandat 388.320 kb on - strandat 388.959 kb on - strand, within MIT1002_00360at 389.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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386,461 + MIT1002_00358 0.50 -0.7
386,469 - MIT1002_00358 0.51 -1.4
386,472 + MIT1002_00358 0.51 -3.2
386,480 - MIT1002_00358 0.51 -0.6
386,538 + MIT1002_00358 0.54 -2.8
386,550 - MIT1002_00358 0.55 +0.1
386,576 + MIT1002_00358 0.56 -1.5
386,579 - MIT1002_00358 0.57 -0.3
386,579 - MIT1002_00358 0.57 +2.4
386,599 + MIT1002_00358 0.58 +0.1
386,599 + MIT1002_00358 0.58 +0.8
386,599 + MIT1002_00358 0.58 +0.5
386,599 + MIT1002_00358 0.58 -1.5
386,607 - MIT1002_00358 0.58 -1.6
386,607 - MIT1002_00358 0.58 -0.5
386,757 - MIT1002_00358 0.66 -0.4
386,878 - MIT1002_00358 0.72 -1.4
386,919 - MIT1002_00358 0.74 +0.5
387,003 - MIT1002_00358 0.79 -0.1
387,015 + MIT1002_00358 0.79 -1.6
387,114 - MIT1002_00358 0.85 +0.8
387,288 + -1.3
387,288 + -1.4
387,461 + -0.6
387,498 + MIT1002_00359 0.10 -1.4
387,513 - MIT1002_00359 0.12 -0.3
387,515 + MIT1002_00359 0.12 +0.4
387,517 + MIT1002_00359 0.12 -1.8
387,517 + MIT1002_00359 0.12 +0.9
387,525 - MIT1002_00359 0.13 +1.3
387,539 + MIT1002_00359 0.15 +0.7
387,549 + MIT1002_00359 0.16 +0.1
387,549 - MIT1002_00359 0.16 +2.3
387,551 + MIT1002_00359 0.16 +0.8
387,551 + MIT1002_00359 0.16 -1.3
387,551 + MIT1002_00359 0.16 -1.2
387,551 + MIT1002_00359 0.16 +0.1
387,559 - MIT1002_00359 0.17 -0.2
387,559 - MIT1002_00359 0.17 +0.6
387,559 - MIT1002_00359 0.17 -0.3
387,559 - MIT1002_00359 0.17 +1.3
387,586 + MIT1002_00359 0.20 +0.4
387,594 - MIT1002_00359 0.21 +2.3
387,594 - MIT1002_00359 0.21 +1.1
387,594 - MIT1002_00359 0.21 -0.2
387,594 - MIT1002_00359 0.21 +1.5
387,598 + MIT1002_00359 0.21 -0.9
387,598 + MIT1002_00359 0.21 -2.0
387,605 + MIT1002_00359 0.22 -0.5
387,605 + MIT1002_00359 0.22 +0.2
387,613 - MIT1002_00359 0.23 -1.4
387,613 - MIT1002_00359 0.23 -0.3
387,621 - MIT1002_00359 0.24 -0.1
387,628 + MIT1002_00359 0.24 +0.3
387,658 - MIT1002_00359 0.28 -0.5
387,694 + MIT1002_00359 0.31 +1.2
387,745 + MIT1002_00359 0.37 -0.7
387,753 - MIT1002_00359 0.38 +5.5
387,759 - MIT1002_00359 0.38 +2.1
387,763 - MIT1002_00359 0.39 +1.1
387,768 + MIT1002_00359 0.39 -1.3
387,786 - MIT1002_00359 0.41 +1.4
387,796 - MIT1002_00359 0.42 +3.0
387,851 - MIT1002_00359 0.48 +0.4
387,874 - MIT1002_00359 0.51 -0.2
387,952 + MIT1002_00359 0.59 +0.7
388,112 + MIT1002_00359 0.76 +0.7
388,137 - MIT1002_00359 0.79 -0.2
388,238 + MIT1002_00359 0.90 -0.4
388,238 + MIT1002_00359 0.90 +0.5
388,251 - +0.2
388,320 - +1.2
388,320 - +2.1
388,959 - MIT1002_00360 0.60 +0.6
389,299 - +1.1

Or see this region's nucleotide sequence