Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00346

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00345 and MIT1002_00346 are separated by 917 nucleotidesMIT1002_00346 and MIT1002_00347 are separated by 136 nucleotides MIT1002_00345: MIT1002_00345 - hypothetical protein, at 370,056 to 370,565 _00345 MIT1002_00346: MIT1002_00346 - hypothetical protein, at 371,483 to 371,743 _00346 MIT1002_00347: MIT1002_00347 - 2-haloalkanoic acid dehalogenase, at 371,880 to 372,551 _00347 Position (kb) 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1at 370.541 kb on - strandat 370.686 kb on + strandat 370.796 kb on - strandat 370.865 kb on - strandat 370.891 kb on - strandat 370.908 kb on - strandat 370.923 kb on + strandat 370.931 kb on - strandat 370.991 kb on - strandat 371.019 kb on + strandat 371.142 kb on - strandat 371.158 kb on + strandat 371.166 kb on - strandat 371.166 kb on - strandat 371.168 kb on + strandat 371.189 kb on + strandat 371.439 kb on + strandat 371.447 kb on - strandat 371.447 kb on - strandat 371.447 kb on - strandat 371.447 kb on - strandat 371.470 kb on + strandat 371.513 kb on + strand, within MIT1002_00346at 371.513 kb on + strand, within MIT1002_00346at 371.517 kb on - strand, within MIT1002_00346at 371.521 kb on - strand, within MIT1002_00346at 371.612 kb on + strand, within MIT1002_00346at 371.636 kb on + strand, within MIT1002_00346at 371.658 kb on - strand, within MIT1002_00346at 371.906 kb on - strandat 371.970 kb on + strand, within MIT1002_00347at 371.985 kb on + strand, within MIT1002_00347at 371.992 kb on + strand, within MIT1002_00347at 372.009 kb on + strand, within MIT1002_00347at 372.010 kb on + strand, within MIT1002_00347at 372.017 kb on - strand, within MIT1002_00347at 372.066 kb on - strand, within MIT1002_00347at 372.066 kb on - strand, within MIT1002_00347at 372.081 kb on + strand, within MIT1002_00347at 372.084 kb on - strand, within MIT1002_00347at 372.084 kb on - strand, within MIT1002_00347at 372.089 kb on - strand, within MIT1002_00347at 372.099 kb on + strand, within MIT1002_00347at 372.216 kb on + strand, within MIT1002_00347at 372.247 kb on - strand, within MIT1002_00347at 372.275 kb on + strand, within MIT1002_00347at 372.280 kb on + strand, within MIT1002_00347at 372.323 kb on + strand, within MIT1002_00347at 372.346 kb on + strand, within MIT1002_00347at 372.407 kb on + strand, within MIT1002_00347at 372.415 kb on - strand, within MIT1002_00347at 372.438 kb on + strand, within MIT1002_00347at 372.444 kb on + strand, within MIT1002_00347at 372.444 kb on + strand, within MIT1002_00347at 372.446 kb on - strand, within MIT1002_00347at 372.452 kb on - strand, within MIT1002_00347at 372.454 kb on - strand, within MIT1002_00347at 372.465 kb on + strand, within MIT1002_00347at 372.512 kb on - strandat 372.559 kb on - strandat 372.611 kb on + strandat 372.611 kb on + strandat 372.611 kb on + strandat 372.621 kb on + strandat 372.659 kb on - strandat 372.679 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
remove
370,541 - -0.1
370,686 + -3.4
370,796 - -1.7
370,865 - +1.3
370,891 - -2.4
370,908 - -0.2
370,923 + +0.3
370,931 - -0.5
370,991 - -1.6
371,019 + -1.5
371,142 - -0.7
371,158 + -1.0
371,166 - +0.1
371,166 - +1.6
371,168 + -0.4
371,189 + +1.0
371,439 + +1.4
371,447 - +0.7
371,447 - -2.5
371,447 - -0.0
371,447 - -1.5
371,470 + -0.2
371,513 + MIT1002_00346 0.11 -0.5
371,513 + MIT1002_00346 0.11 +1.0
371,517 - MIT1002_00346 0.13 -1.7
371,521 - MIT1002_00346 0.15 +1.3
371,612 + MIT1002_00346 0.49 +1.2
371,636 + MIT1002_00346 0.59 -0.1
371,658 - MIT1002_00346 0.67 +1.0
371,906 - -0.5
371,970 + MIT1002_00347 0.13 -1.1
371,985 + MIT1002_00347 0.16 +0.4
371,992 + MIT1002_00347 0.17 -1.0
372,009 + MIT1002_00347 0.19 +1.1
372,010 + MIT1002_00347 0.19 +0.2
372,017 - MIT1002_00347 0.20 -0.8
372,066 - MIT1002_00347 0.28 -1.3
372,066 - MIT1002_00347 0.28 +0.2
372,081 + MIT1002_00347 0.30 -0.3
372,084 - MIT1002_00347 0.30 -2.2
372,084 - MIT1002_00347 0.30 -1.0
372,089 - MIT1002_00347 0.31 -1.2
372,099 + MIT1002_00347 0.33 +0.2
372,216 + MIT1002_00347 0.50 +0.0
372,247 - MIT1002_00347 0.55 +0.6
372,275 + MIT1002_00347 0.59 +0.7
372,280 + MIT1002_00347 0.60 +0.5
372,323 + MIT1002_00347 0.66 +0.7
372,346 + MIT1002_00347 0.69 +0.4
372,407 + MIT1002_00347 0.78 -0.5
372,415 - MIT1002_00347 0.80 +0.1
372,438 + MIT1002_00347 0.83 -0.1
372,444 + MIT1002_00347 0.84 +0.9
372,444 + MIT1002_00347 0.84 +1.1
372,446 - MIT1002_00347 0.84 +0.7
372,452 - MIT1002_00347 0.85 +0.4
372,454 - MIT1002_00347 0.85 -1.2
372,465 + MIT1002_00347 0.87 +0.3
372,512 - -0.5
372,559 - -3.0
372,611 + +0.2
372,611 + -2.1
372,611 + +0.7
372,621 + +1.0
372,659 - -1.2
372,679 - -0.1

Or see this region's nucleotide sequence