Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00305

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00303 and MIT1002_00304 overlap by 26 nucleotidesMIT1002_00304 and MIT1002_00305 are separated by 0 nucleotidesMIT1002_00305 and MIT1002_00306 are separated by 404 nucleotidesMIT1002_00306 and MIT1002_00307 are separated by 79 nucleotides MIT1002_00303: MIT1002_00303 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 328,052 to 329,794 _00303 MIT1002_00304: MIT1002_00304 - SNARE associated Golgi protein, at 329,769 to 330,485 _00304 MIT1002_00305: MIT1002_00305 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 330,486 to 331,220 _00305 MIT1002_00306: MIT1002_00306 - hypothetical protein, at 331,625 to 331,918 _00306 MIT1002_00307: MIT1002_00307 - Response regulator ArlR, at 331,998 to 332,804 _00307 Position (kb) 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 329.500 kb on - strand, within MIT1002_00303at 329.500 kb on - strand, within MIT1002_00303at 329.515 kb on - strand, within MIT1002_00303at 329.534 kb on + strand, within MIT1002_00303at 329.572 kb on - strand, within MIT1002_00303at 329.572 kb on - strand, within MIT1002_00303at 329.586 kb on + strand, within MIT1002_00303at 329.586 kb on + strand, within MIT1002_00303at 329.618 kb on + strand, within MIT1002_00303at 329.618 kb on + strand, within MIT1002_00303at 329.626 kb on - strandat 329.636 kb on - strandat 329.783 kb on + strandat 329.791 kb on - strandat 329.941 kb on + strand, within MIT1002_00304at 329.947 kb on + strand, within MIT1002_00304at 330.013 kb on - strand, within MIT1002_00304at 330.130 kb on + strand, within MIT1002_00304at 330.200 kb on - strand, within MIT1002_00304at 330.205 kb on + strand, within MIT1002_00304at 330.210 kb on + strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.218 kb on - strand, within MIT1002_00304at 330.245 kb on - strand, within MIT1002_00304at 330.269 kb on - strand, within MIT1002_00304at 330.270 kb on - strand, within MIT1002_00304at 330.397 kb on - strand, within MIT1002_00304at 330.577 kb on - strand, within MIT1002_00305at 330.577 kb on - strand, within MIT1002_00305at 330.625 kb on + strand, within MIT1002_00305at 330.677 kb on - strand, within MIT1002_00305at 330.740 kb on + strand, within MIT1002_00305at 330.749 kb on - strand, within MIT1002_00305at 330.829 kb on + strand, within MIT1002_00305at 330.837 kb on - strand, within MIT1002_00305at 330.875 kb on - strand, within MIT1002_00305at 330.912 kb on + strand, within MIT1002_00305at 330.973 kb on + strand, within MIT1002_00305at 330.977 kb on + strand, within MIT1002_00305at 330.978 kb on + strand, within MIT1002_00305at 330.978 kb on + strand, within MIT1002_00305at 330.983 kb on + strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 330.986 kb on - strand, within MIT1002_00305at 331.005 kb on - strand, within MIT1002_00305at 331.005 kb on - strand, within MIT1002_00305at 331.019 kb on + strand, within MIT1002_00305at 331.138 kb on + strand, within MIT1002_00305at 331.359 kb on - strandat 331.379 kb on + strandat 331.379 kb on + strandat 331.387 kb on - strandat 331.389 kb on - strandat 331.389 kb on - strandat 331.401 kb on - strandat 331.422 kb on - strandat 331.426 kb on + strandat 331.439 kb on - strandat 331.483 kb on - strandat 331.522 kb on + strandat 331.558 kb on - strandat 331.639 kb on + strandat 331.724 kb on + strand, within MIT1002_00306at 331.779 kb on + strand, within MIT1002_00306at 331.911 kb on + strandat 331.923 kb on + strandat 331.923 kb on + strandat 331.935 kb on + strandat 331.973 kb on - strandat 332.036 kb on - strandat 332.036 kb on - strandat 332.070 kb on - strandat 332.078 kb on - strandat 332.119 kb on + strand, within MIT1002_00307at 332.133 kb on + strand, within MIT1002_00307at 332.219 kb on - strand, within MIT1002_00307at 332.220 kb on - strand, within MIT1002_00307

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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329,500 - MIT1002_00303 0.83 +0.1
329,500 - MIT1002_00303 0.83 +1.2
329,515 - MIT1002_00303 0.84 +0.4
329,534 + MIT1002_00303 0.85 -0.0
329,572 - MIT1002_00303 0.87 -1.0
329,572 - MIT1002_00303 0.87 +3.3
329,586 + MIT1002_00303 0.88 +0.0
329,586 + MIT1002_00303 0.88 -0.9
329,618 + MIT1002_00303 0.90 -1.3
329,618 + MIT1002_00303 0.90 -0.5
329,626 - +0.4
329,636 - +0.0
329,783 + -1.4
329,791 - -2.1
329,941 + MIT1002_00304 0.24 +1.8
329,947 + MIT1002_00304 0.25 -0.2
330,013 - MIT1002_00304 0.34 +0.8
330,130 + MIT1002_00304 0.50 -0.8
330,200 - MIT1002_00304 0.60 +1.4
330,205 + MIT1002_00304 0.61 +1.0
330,210 + MIT1002_00304 0.62 +0.5
330,218 - MIT1002_00304 0.63 -0.4
330,218 - MIT1002_00304 0.63 -2.0
330,218 - MIT1002_00304 0.63 +0.4
330,218 - MIT1002_00304 0.63 +1.1
330,218 - MIT1002_00304 0.63 +1.9
330,218 - MIT1002_00304 0.63 +0.4
330,245 - MIT1002_00304 0.66 -1.0
330,269 - MIT1002_00304 0.70 -0.1
330,270 - MIT1002_00304 0.70 +0.1
330,397 - MIT1002_00304 0.88 -0.8
330,577 - MIT1002_00305 0.12 -1.4
330,577 - MIT1002_00305 0.12 -1.0
330,625 + MIT1002_00305 0.19 -0.2
330,677 - MIT1002_00305 0.26 -0.2
330,740 + MIT1002_00305 0.35 +1.2
330,749 - MIT1002_00305 0.36 -0.4
330,829 + MIT1002_00305 0.47 -3.1
330,837 - MIT1002_00305 0.48 +0.2
330,875 - MIT1002_00305 0.53 -0.1
330,912 + MIT1002_00305 0.58 -1.2
330,973 + MIT1002_00305 0.66 +0.8
330,977 + MIT1002_00305 0.67 -0.1
330,978 + MIT1002_00305 0.67 -0.2
330,978 + MIT1002_00305 0.67 -0.7
330,983 + MIT1002_00305 0.68 -0.2
330,986 - MIT1002_00305 0.68 -1.8
330,986 - MIT1002_00305 0.68 -1.3
330,986 - MIT1002_00305 0.68 -0.3
330,986 - MIT1002_00305 0.68 -2.8
331,005 - MIT1002_00305 0.71 -2.2
331,005 - MIT1002_00305 0.71 +2.7
331,019 + MIT1002_00305 0.73 +1.2
331,138 + MIT1002_00305 0.89 -0.3
331,359 - -0.6
331,379 + -1.0
331,379 + +1.6
331,387 - +0.2
331,389 - -0.4
331,389 - -0.9
331,401 - +1.6
331,422 - -0.3
331,426 + +1.6
331,439 - -0.8
331,483 - +0.3
331,522 + -0.8
331,558 - -0.2
331,639 + -1.4
331,724 + MIT1002_00306 0.34 +0.4
331,779 + MIT1002_00306 0.52 -0.7
331,911 + +0.2
331,923 + +0.5
331,923 + +0.9
331,935 + +0.6
331,973 - -1.7
332,036 - -0.7
332,036 - -2.3
332,070 - -1.1
332,078 - +0.1
332,119 + MIT1002_00307 0.15 -0.9
332,133 + MIT1002_00307 0.17 -0.5
332,219 - MIT1002_00307 0.27 +1.2
332,220 - MIT1002_00307 0.28 +0.4

Or see this region's nucleotide sequence