Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00240

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00239 and MIT1002_00240 are separated by 59 nucleotidesMIT1002_00240 and MIT1002_00241 are separated by 151 nucleotides MIT1002_00239: MIT1002_00239 - A/G-specific adenine glycosylase, at 268,304 to 269,371 _00239 MIT1002_00240: MIT1002_00240 - putative Fe(2+)-trafficking protein, at 269,431 to 269,703 _00240 MIT1002_00241: MIT1002_00241 - tRNA-Phe, at 269,855 to 269,930 _00241 Position (kb) 269 270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 268.499 kb on + strand, within MIT1002_00239at 268.499 kb on + strand, within MIT1002_00239at 268.520 kb on + strand, within MIT1002_00239at 268.551 kb on + strand, within MIT1002_00239at 268.553 kb on - strand, within MIT1002_00239at 268.553 kb on - strand, within MIT1002_00239at 268.553 kb on - strand, within MIT1002_00239at 268.558 kb on - strand, within MIT1002_00239at 268.559 kb on - strand, within MIT1002_00239at 268.635 kb on + strand, within MIT1002_00239at 268.669 kb on + strand, within MIT1002_00239at 268.669 kb on + strand, within MIT1002_00239at 268.718 kb on + strand, within MIT1002_00239at 268.758 kb on + strand, within MIT1002_00239at 268.759 kb on - strand, within MIT1002_00239at 268.846 kb on + strand, within MIT1002_00239at 268.881 kb on - strand, within MIT1002_00239at 268.917 kb on - strand, within MIT1002_00239at 268.922 kb on - strand, within MIT1002_00239at 268.958 kb on - strand, within MIT1002_00239at 269.042 kb on + strand, within MIT1002_00239at 269.042 kb on + strand, within MIT1002_00239at 269.042 kb on + strand, within MIT1002_00239at 269.042 kb on - strand, within MIT1002_00239at 269.061 kb on + strand, within MIT1002_00239at 269.061 kb on + strand, within MIT1002_00239at 269.061 kb on + strand, within MIT1002_00239at 269.069 kb on - strand, within MIT1002_00239at 269.086 kb on + strand, within MIT1002_00239at 269.086 kb on + strand, within MIT1002_00239at 269.091 kb on + strand, within MIT1002_00239at 269.092 kb on - strand, within MIT1002_00239at 269.094 kb on - strand, within MIT1002_00239at 269.094 kb on - strand, within MIT1002_00239at 269.094 kb on - strand, within MIT1002_00239at 269.119 kb on + strand, within MIT1002_00239at 269.119 kb on + strand, within MIT1002_00239at 269.127 kb on - strand, within MIT1002_00239at 269.144 kb on - strand, within MIT1002_00239at 269.158 kb on + strand, within MIT1002_00239at 269.166 kb on - strand, within MIT1002_00239at 269.194 kb on - strand, within MIT1002_00239at 269.194 kb on - strand, within MIT1002_00239at 269.205 kb on + strand, within MIT1002_00239at 269.205 kb on - strand, within MIT1002_00239at 269.213 kb on - strand, within MIT1002_00239at 269.232 kb on + strand, within MIT1002_00239at 269.373 kb on - strandat 269.451 kb on - strandat 269.615 kb on - strand, within MIT1002_00240at 269.660 kb on + strand, within MIT1002_00240at 269.668 kb on - strand, within MIT1002_00240at 269.668 kb on - strand, within MIT1002_00240at 269.955 kb on - strandat 270.012 kb on - strandat 270.016 kb on + strandat 270.031 kb on + strandat 270.060 kb on - strandat 270.074 kb on - strandat 270.122 kb on + strandat 270.163 kb on - strandat 270.195 kb on - strandat 270.214 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.259 kb on + strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.267 kb on - strandat 270.269 kb on - strandat 270.296 kb on + strandat 270.299 kb on - strandat 270.304 kb on - strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.305 kb on + strandat 270.313 kb on - strandat 270.313 kb on - strandat 270.313 kb on - strandat 270.313 kb on - strandat 270.360 kb on - strandat 270.414 kb on - strandat 270.414 kb on - strandat 270.432 kb on + strandat 270.437 kb on + strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.445 kb on - strandat 270.445 kb on - strandat 270.448 kb on - strandat 270.448 kb on - strandat 270.449 kb on - strandat 270.449 kb on - strandat 270.449 kb on - strandat 270.449 kb on - strandat 270.449 kb on - strandat 270.487 kb on + strandat 270.562 kb on - strandat 270.570 kb on - strandat 270.587 kb on - strandat 270.643 kb on + strandat 270.648 kb on + strandat 270.659 kb on + strandat 270.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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268,499 + MIT1002_00239 0.18 -0.8
268,499 + MIT1002_00239 0.18 +0.2
268,520 + MIT1002_00239 0.20 +1.2
268,551 + MIT1002_00239 0.23 -1.1
268,553 - MIT1002_00239 0.23 -1.1
268,553 - MIT1002_00239 0.23 -0.5
268,553 - MIT1002_00239 0.23 -0.1
268,558 - MIT1002_00239 0.24 -1.2
268,559 - MIT1002_00239 0.24 +2.0
268,635 + MIT1002_00239 0.31 -1.2
268,669 + MIT1002_00239 0.34 +0.6
268,669 + MIT1002_00239 0.34 -0.4
268,718 + MIT1002_00239 0.39 -0.6
268,758 + MIT1002_00239 0.43 +3.6
268,759 - MIT1002_00239 0.43 +0.5
268,846 + MIT1002_00239 0.51 -1.8
268,881 - MIT1002_00239 0.54 +0.8
268,917 - MIT1002_00239 0.57 -0.9
268,922 - MIT1002_00239 0.58 +0.4
268,958 - MIT1002_00239 0.61 -1.5
269,042 + MIT1002_00239 0.69 +1.0
269,042 + MIT1002_00239 0.69 -0.7
269,042 + MIT1002_00239 0.69 -0.8
269,042 - MIT1002_00239 0.69 -0.1
269,061 + MIT1002_00239 0.71 -1.8
269,061 + MIT1002_00239 0.71 +0.1
269,061 + MIT1002_00239 0.71 +0.8
269,069 - MIT1002_00239 0.72 -0.1
269,086 + MIT1002_00239 0.73 +0.1
269,086 + MIT1002_00239 0.73 +0.1
269,091 + MIT1002_00239 0.74 -0.2
269,092 - MIT1002_00239 0.74 +0.9
269,094 - MIT1002_00239 0.74 +0.8
269,094 - MIT1002_00239 0.74 +2.3
269,094 - MIT1002_00239 0.74 +0.5
269,119 + MIT1002_00239 0.76 +1.4
269,119 + MIT1002_00239 0.76 +1.0
269,127 - MIT1002_00239 0.77 +0.0
269,144 - MIT1002_00239 0.79 -1.0
269,158 + MIT1002_00239 0.80 -0.0
269,166 - MIT1002_00239 0.81 +1.3
269,194 - MIT1002_00239 0.83 +0.6
269,194 - MIT1002_00239 0.83 +0.1
269,205 + MIT1002_00239 0.84 -0.1
269,205 - MIT1002_00239 0.84 -0.7
269,213 - MIT1002_00239 0.85 -0.0
269,232 + MIT1002_00239 0.87 +2.6
269,373 - +1.0
269,451 - -0.1
269,615 - MIT1002_00240 0.67 +0.1
269,660 + MIT1002_00240 0.84 +1.3
269,668 - MIT1002_00240 0.87 +0.1
269,668 - MIT1002_00240 0.87 +1.7
269,955 - -0.8
270,012 - -0.8
270,016 + -0.9
270,031 + -0.8
270,060 - +0.1
270,074 - -2.2
270,122 + +1.0
270,163 - -2.2
270,195 - +0.8
270,214 + +0.9
270,259 + -1.2
270,259 + -1.1
270,259 + -0.2
270,259 + -0.1
270,259 + +0.1
270,259 + -0.0
270,259 + +0.2
270,259 + -0.4
270,259 + +1.1
270,267 - -0.4
270,267 - +1.0
270,267 - -1.8
270,267 - +0.2
270,267 - +0.8
270,269 - -0.3
270,296 + -0.8
270,299 - -0.1
270,304 - -1.0
270,305 + -1.1
270,305 + -0.7
270,305 + -1.3
270,305 + -0.2
270,305 + -1.2
270,305 + -2.3
270,305 + -1.3
270,305 + -0.1
270,305 + -1.3
270,305 + -0.7
270,305 + -0.1
270,305 + -2.0
270,313 - -0.4
270,313 - -0.6
270,313 - -1.3
270,313 - -0.0
270,360 - +0.8
270,414 - -1.0
270,414 - -0.6
270,432 + +1.6
270,437 + -1.0
270,441 + +0.1
270,441 + -1.2
270,441 + -0.9
270,441 + -0.2
270,441 + -0.4
270,441 + +1.0
270,441 + -1.0
270,445 - -0.9
270,445 - +0.7
270,448 - -0.9
270,448 - +0.6
270,449 - +0.8
270,449 - -0.5
270,449 - -0.2
270,449 - +0.2
270,449 - +2.2
270,487 + +0.9
270,562 - -2.4
270,570 - +1.0
270,587 - +0.3
270,643 + -0.6
270,648 + -0.6
270,659 + +0.9
270,667 - -0.7

Or see this region's nucleotide sequence