Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00172 and MIT1002_00173 overlap by 4 nucleotides MIT1002_00173 and MIT1002_00174 are separated by 22 nucleotides MIT1002_00174 and MIT1002_00175 are separated by 212 nucleotides MIT1002_00175 and MIT1002_00176 are separated by 11 nucleotides
MIT1002_00172: MIT1002_00172 - 4-hydroxy-tetrahydrodipicolinate synthase, at 187,289 to 188,236
_00172
MIT1002_00173: MIT1002_00173 - hypothetical protein, at 188,233 to 188,931
_00173
MIT1002_00174: MIT1002_00174 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 188,954 to 189,373
_00174
MIT1002_00175: MIT1002_00175 - hypothetical protein, at 189,586 to 190,062
_00175
MIT1002_00176: MIT1002_00176 - Tail-specific protease precursor, at 190,074 to 191,309
_00176
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 187.967 kb on + strand, within MIT1002_00172 at 187.975 kb on - strand, within MIT1002_00172 at 187.975 kb on - strand, within MIT1002_00172 at 187.992 kb on + strand, within MIT1002_00172 at 188.000 kb on - strand, within MIT1002_00172 at 188.020 kb on + strand, within MIT1002_00172 at 188.031 kb on - strand, within MIT1002_00172 at 188.110 kb on + strand, within MIT1002_00172 at 188.147 kb on - strand at 188.167 kb on + strand at 188.167 kb on + strand at 188.175 kb on - strand at 188.231 kb on + strand at 188.239 kb on - strand at 188.243 kb on + strand at 188.251 kb on - strand at 188.251 kb on - strand at 188.261 kb on - strand at 188.366 kb on + strand, within MIT1002_00173 at 188.366 kb on + strand, within MIT1002_00173 at 188.366 kb on + strand, within MIT1002_00173 at 188.374 kb on - strand, within MIT1002_00173 at 188.427 kb on + strand, within MIT1002_00173 at 188.466 kb on - strand, within MIT1002_00173 at 188.519 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.531 kb on + strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.539 kb on - strand, within MIT1002_00173 at 188.644 kb on + strand, within MIT1002_00173 at 188.690 kb on + strand, within MIT1002_00173 at 188.698 kb on - strand, within MIT1002_00173 at 188.713 kb on - strand, within MIT1002_00173 at 188.732 kb on - strand, within MIT1002_00173 at 188.844 kb on + strand, within MIT1002_00173 at 188.886 kb on + strand at 188.886 kb on + strand at 188.886 kb on + strand at 188.886 kb on + strand at 188.886 kb on + strand at 188.891 kb on + strand at 188.891 kb on + strand at 188.894 kb on - strand at 188.899 kb on - strand at 188.936 kb on + strand at 188.937 kb on - strand at 188.959 kb on - strand at 188.978 kb on - strand at 188.992 kb on - strand at 189.002 kb on - strand, within MIT1002_00174 at 189.005 kb on + strand, within MIT1002_00174 at 189.013 kb on - strand, within MIT1002_00174 at 189.016 kb on + strand, within MIT1002_00174 at 189.028 kb on + strand, within MIT1002_00174 at 189.049 kb on + strand, within MIT1002_00174 at 189.054 kb on + strand, within MIT1002_00174 at 189.069 kb on - strand, within MIT1002_00174 at 189.069 kb on - strand, within MIT1002_00174 at 189.227 kb on + strand, within MIT1002_00174 at 189.235 kb on - strand, within MIT1002_00174 at 189.278 kb on - strand, within MIT1002_00174 at 189.279 kb on - strand, within MIT1002_00174 at 189.584 kb on - strand at 189.613 kb on + strand at 189.621 kb on - strand at 189.634 kb on - strand, within MIT1002_00175 at 189.658 kb on - strand, within MIT1002_00175 at 189.866 kb on + strand, within MIT1002_00175 at 189.893 kb on - strand, within MIT1002_00175 at 189.893 kb on - strand, within MIT1002_00175 at 189.893 kb on - strand, within MIT1002_00175 at 189.928 kb on - strand, within MIT1002_00175 at 189.953 kb on + strand, within MIT1002_00175 at 189.953 kb on + strand, within MIT1002_00175 at 189.965 kb on + strand, within MIT1002_00175 at 189.994 kb on - strand, within MIT1002_00175 at 190.141 kb on - strand at 190.162 kb on + strand at 190.167 kb on + strand at 190.202 kb on + strand, within MIT1002_00176 at 190.239 kb on - strand, within MIT1002_00176 at 190.246 kb on + strand, within MIT1002_00176 at 190.253 kb on - strand, within MIT1002_00176 at 190.262 kb on + strand, within MIT1002_00176 at 190.361 kb on + strand, within MIT1002_00176 at 190.369 kb on - strand, within MIT1002_00176
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 187,967 + MIT1002_00172 0.72 -0.9 187,975 - MIT1002_00172 0.72 -0.8 187,975 - MIT1002_00172 0.72 -0.9 187,992 + MIT1002_00172 0.74 -0.6 188,000 - MIT1002_00172 0.75 +1.2 188,020 + MIT1002_00172 0.77 -0.6 188,031 - MIT1002_00172 0.78 -2.6 188,110 + MIT1002_00172 0.87 -2.8 188,147 - -0.1 188,167 + +0.3 188,167 + -0.3 188,175 - +0.6 188,231 + +1.9 188,239 - -0.9 188,243 + -0.6 188,251 - -0.5 188,251 - -1.2 188,261 - +0.4 188,366 + MIT1002_00173 0.19 -0.7 188,366 + MIT1002_00173 0.19 -1.4 188,366 + MIT1002_00173 0.19 -0.3 188,374 - MIT1002_00173 0.20 +0.0 188,427 + MIT1002_00173 0.28 +1.7 188,466 - MIT1002_00173 0.33 -0.3 188,519 + MIT1002_00173 0.41 +0.9 188,531 + MIT1002_00173 0.43 +1.3 188,531 + MIT1002_00173 0.43 -1.4 188,531 + MIT1002_00173 0.43 +1.7 188,531 + MIT1002_00173 0.43 +1.9 188,531 + MIT1002_00173 0.43 -1.9 188,531 + MIT1002_00173 0.43 -0.6 188,531 + MIT1002_00173 0.43 -0.7 188,531 + MIT1002_00173 0.43 -0.3 188,531 + MIT1002_00173 0.43 -1.3 188,531 + MIT1002_00173 0.43 -0.3 188,531 + MIT1002_00173 0.43 +0.5 188,531 + MIT1002_00173 0.43 +0.8 188,531 + MIT1002_00173 0.43 +0.5 188,531 + MIT1002_00173 0.43 -2.0 188,531 + MIT1002_00173 0.43 +0.0 188,531 + MIT1002_00173 0.43 -1.1 188,539 - MIT1002_00173 0.44 -0.2 188,539 - MIT1002_00173 0.44 +0.3 188,539 - MIT1002_00173 0.44 +0.6 188,539 - MIT1002_00173 0.44 -0.2 188,539 - MIT1002_00173 0.44 -0.8 188,539 - MIT1002_00173 0.44 -1.3 188,539 - MIT1002_00173 0.44 +1.0 188,539 - MIT1002_00173 0.44 +2.4 188,644 + MIT1002_00173 0.59 +0.2 188,690 + MIT1002_00173 0.65 +0.5 188,698 - MIT1002_00173 0.67 -0.0 188,713 - MIT1002_00173 0.69 -1.5 188,732 - MIT1002_00173 0.71 +2.5 188,844 + MIT1002_00173 0.87 +0.6 188,886 + +2.2 188,886 + +0.4 188,886 + +0.3 188,886 + -0.5 188,886 + -1.9 188,891 + +1.2 188,891 + +0.2 188,894 - -0.1 188,899 - -0.5 188,936 + +0.6 188,937 - +0.5 188,959 - +1.1 188,978 - +1.7 188,992 - -1.5 189,002 - MIT1002_00174 0.11 -0.9 189,005 + MIT1002_00174 0.12 +0.7 189,013 - MIT1002_00174 0.14 +1.0 189,016 + MIT1002_00174 0.15 +3.5 189,028 + MIT1002_00174 0.18 -0.2 189,049 + MIT1002_00174 0.23 -1.1 189,054 + MIT1002_00174 0.24 -1.2 189,069 - MIT1002_00174 0.27 +0.9 189,069 - MIT1002_00174 0.27 +0.6 189,227 + MIT1002_00174 0.65 -0.9 189,235 - MIT1002_00174 0.67 +2.1 189,278 - MIT1002_00174 0.77 +1.0 189,279 - MIT1002_00174 0.77 +1.2 189,584 - -1.6 189,613 + +0.6 189,621 - -1.5 189,634 - MIT1002_00175 0.10 -0.7 189,658 - MIT1002_00175 0.15 -1.1 189,866 + MIT1002_00175 0.59 -0.9 189,893 - MIT1002_00175 0.64 -1.1 189,893 - MIT1002_00175 0.64 +2.4 189,893 - MIT1002_00175 0.64 +2.0 189,928 - MIT1002_00175 0.72 -1.2 189,953 + MIT1002_00175 0.77 -0.5 189,953 + MIT1002_00175 0.77 -3.0 189,965 + MIT1002_00175 0.79 +0.6 189,994 - MIT1002_00175 0.86 +0.5 190,141 - -1.0 190,162 + -0.9 190,167 + -0.3 190,202 + MIT1002_00176 0.10 -0.7 190,239 - MIT1002_00176 0.13 +0.5 190,246 + MIT1002_00176 0.14 -1.3 190,253 - MIT1002_00176 0.14 -1.4 190,262 + MIT1002_00176 0.15 +0.5 190,361 + MIT1002_00176 0.23 +0.7 190,369 - MIT1002_00176 0.24 +1.4
Or see this region's nucleotide sequence