Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00120 and MIT1002_00121 are separated by 10 nucleotides MIT1002_00121 and MIT1002_00122 are separated by 89 nucleotides
MIT1002_00120: MIT1002_00120 - hypothetical protein, at 130,753 to 131,040
_00120
MIT1002_00121: MIT1002_00121 - hypothetical protein, at 131,051 to 131,251
_00121
MIT1002_00122: MIT1002_00122 - UvsW helicase, at 131,341 to 133,731
_00122
Position (kb) 131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.093 kb on + strand at 130.148 kb on + strand at 130.148 kb on + strand at 130.156 kb on - strand at 130.161 kb on - strand at 130.163 kb on + strand at 130.214 kb on - strand at 130.219 kb on - strand at 130.305 kb on + strand at 130.307 kb on + strand at 130.419 kb on - strand at 130.432 kb on - strand at 130.476 kb on + strand at 130.481 kb on + strand at 130.484 kb on - strand at 130.518 kb on + strand at 130.518 kb on + strand at 130.531 kb on + strand at 130.533 kb on + strand at 130.540 kb on + strand at 130.540 kb on + strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.598 kb on + strand at 130.600 kb on + strand at 130.608 kb on - strand at 130.639 kb on + strand at 130.707 kb on + strand at 130.712 kb on + strand at 130.737 kb on + strand at 130.745 kb on - strand at 130.749 kb on + strand at 130.749 kb on + strand at 130.757 kb on - strand at 130.767 kb on - strand at 130.800 kb on + strand, within MIT1002_00120 at 130.800 kb on + strand, within MIT1002_00120 at 130.805 kb on + strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.818 kb on - strand, within MIT1002_00120 at 130.818 kb on - strand, within MIT1002_00120 at 130.823 kb on - strand, within MIT1002_00120 at 130.876 kb on - strand, within MIT1002_00120 at 130.878 kb on - strand, within MIT1002_00120 at 130.980 kb on + strand, within MIT1002_00120 at 130.987 kb on + strand, within MIT1002_00120 at 131.004 kb on + strand, within MIT1002_00120 at 131.013 kb on - strand at 131.036 kb on + strand at 131.049 kb on - strand at 131.080 kb on - strand, within MIT1002_00121 at 131.080 kb on - strand, within MIT1002_00121 at 131.114 kb on + strand, within MIT1002_00121 at 131.138 kb on + strand, within MIT1002_00121 at 131.143 kb on + strand, within MIT1002_00121 at 131.177 kb on + strand, within MIT1002_00121 at 131.240 kb on - strand at 131.241 kb on + strand at 131.306 kb on + strand at 131.307 kb on - strand at 131.307 kb on - strand at 131.332 kb on - strand at 131.399 kb on + strand at 131.404 kb on - strand at 131.442 kb on + strand at 131.466 kb on + strand at 131.584 kb on - strand, within MIT1002_00122 at 131.590 kb on + strand, within MIT1002_00122 at 131.590 kb on + strand, within MIT1002_00122 at 131.591 kb on + strand, within MIT1002_00122 at 131.593 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.608 kb on - strand, within MIT1002_00122 at 131.644 kb on - strand, within MIT1002_00122 at 131.696 kb on + strand, within MIT1002_00122 at 131.696 kb on + strand, within MIT1002_00122 at 131.706 kb on + strand, within MIT1002_00122 at 131.729 kb on + strand, within MIT1002_00122 at 131.786 kb on - strand, within MIT1002_00122 at 131.811 kb on + strand, within MIT1002_00122 at 131.811 kb on + strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.889 kb on + strand, within MIT1002_00122 at 131.889 kb on + strand, within MIT1002_00122 at 131.897 kb on - strand, within MIT1002_00122 at 131.897 kb on - strand, within MIT1002_00122 at 131.923 kb on + strand, within MIT1002_00122 at 131.972 kb on + strand, within MIT1002_00122 at 132.036 kb on - strand, within MIT1002_00122 at 132.217 kb on - strand, within MIT1002_00122 at 132.251 kb on + strand, within MIT1002_00122
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 130,093 + -0.6 130,148 + -1.8 130,148 + +1.1 130,156 - -1.3 130,161 - -1.1 130,163 + +0.4 130,214 - +1.1 130,219 - -1.9 130,305 + -0.4 130,307 + +0.5 130,419 - -0.2 130,432 - +0.9 130,476 + +2.6 130,481 + -2.4 130,484 - +0.3 130,518 + -1.2 130,518 + +0.5 130,531 + -0.5 130,533 + -0.4 130,540 + -1.4 130,540 + -1.9 130,548 - -0.5 130,548 - +2.6 130,548 - -1.2 130,548 - -0.1 130,548 - +1.7 130,598 + -1.2 130,600 + -0.9 130,608 - -1.3 130,639 + -0.5 130,707 + +0.2 130,712 + +0.7 130,737 + +0.2 130,745 - +0.3 130,749 + +1.2 130,749 + +1.5 130,757 - +1.0 130,767 - -0.8 130,800 + MIT1002_00120 0.16 +1.9 130,800 + MIT1002_00120 0.16 +1.1 130,805 + MIT1002_00120 0.18 +1.8 130,808 - MIT1002_00120 0.19 +0.5 130,808 - MIT1002_00120 0.19 +1.6 130,808 - MIT1002_00120 0.19 -2.5 130,808 - MIT1002_00120 0.19 -0.7 130,808 - MIT1002_00120 0.19 +0.6 130,818 - MIT1002_00120 0.23 -0.6 130,818 - MIT1002_00120 0.23 +1.5 130,823 - MIT1002_00120 0.24 -0.1 130,876 - MIT1002_00120 0.43 +0.6 130,878 - MIT1002_00120 0.43 +1.1 130,980 + MIT1002_00120 0.79 +0.3 130,987 + MIT1002_00120 0.81 +0.4 131,004 + MIT1002_00120 0.87 +0.9 131,013 - -1.1 131,036 + -0.7 131,049 - -1.1 131,080 - MIT1002_00121 0.14 -0.1 131,080 - MIT1002_00121 0.14 +1.6 131,114 + MIT1002_00121 0.31 +1.7 131,138 + MIT1002_00121 0.43 -1.6 131,143 + MIT1002_00121 0.46 +0.4 131,177 + MIT1002_00121 0.63 +1.6 131,240 - -0.6 131,241 + -0.1 131,306 + -0.7 131,307 - -0.3 131,307 - +2.1 131,332 - -0.5 131,399 + +0.8 131,404 - -1.0 131,442 + -0.8 131,466 + -1.8 131,584 - MIT1002_00122 0.10 +0.8 131,590 + MIT1002_00122 0.10 +1.5 131,590 + MIT1002_00122 0.10 -0.9 131,591 + MIT1002_00122 0.10 -1.9 131,593 - MIT1002_00122 0.11 +1.0 131,598 - MIT1002_00122 0.11 +0.3 131,598 - MIT1002_00122 0.11 -1.4 131,598 - MIT1002_00122 0.11 +0.7 131,598 - MIT1002_00122 0.11 -1.1 131,598 - MIT1002_00122 0.11 -0.9 131,608 - MIT1002_00122 0.11 -0.1 131,644 - MIT1002_00122 0.13 -1.4 131,696 + MIT1002_00122 0.15 +0.8 131,696 + MIT1002_00122 0.15 -1.5 131,706 + MIT1002_00122 0.15 -0.5 131,729 + MIT1002_00122 0.16 -0.9 131,786 - MIT1002_00122 0.19 -0.2 131,811 + MIT1002_00122 0.20 -0.6 131,811 + MIT1002_00122 0.20 -1.9 131,819 - MIT1002_00122 0.20 +1.1 131,819 - MIT1002_00122 0.20 +2.2 131,819 - MIT1002_00122 0.20 -1.0 131,819 - MIT1002_00122 0.20 +0.1 131,889 + MIT1002_00122 0.23 -0.5 131,889 + MIT1002_00122 0.23 -0.2 131,897 - MIT1002_00122 0.23 -0.9 131,897 - MIT1002_00122 0.23 -0.3 131,923 + MIT1002_00122 0.24 -3.6 131,972 + MIT1002_00122 0.26 -0.9 132,036 - MIT1002_00122 0.29 +0.5 132,217 - MIT1002_00122 0.37 -2.0 132,251 + MIT1002_00122 0.38 +0.9
Or see this region's nucleotide sequence