Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00088

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00087 and MIT1002_00088 are separated by 137 nucleotidesMIT1002_00088 and MIT1002_00089 are separated by 212 nucleotides MIT1002_00087: MIT1002_00087 - hypothetical protein, at 94,003 to 94,926 _00087 MIT1002_00088: MIT1002_00088 - hydroxyacylglutathione hydrolase, at 95,064 to 95,825 _00088 MIT1002_00089: MIT1002_00089 - putative ATPase, at 96,038 to 97,423 _00089 Position (kb) 95 96Strain fitness (log2 ratio) -2 -1 0 1 2 3at 94.101 kb on - strand, within MIT1002_00087at 94.142 kb on + strand, within MIT1002_00087at 94.142 kb on + strand, within MIT1002_00087at 94.142 kb on + strand, within MIT1002_00087at 94.150 kb on - strand, within MIT1002_00087at 94.150 kb on - strand, within MIT1002_00087at 94.288 kb on + strand, within MIT1002_00087at 94.296 kb on - strand, within MIT1002_00087at 94.308 kb on - strand, within MIT1002_00087at 94.339 kb on - strand, within MIT1002_00087at 94.344 kb on + strand, within MIT1002_00087at 94.362 kb on - strand, within MIT1002_00087at 94.367 kb on - strand, within MIT1002_00087at 94.507 kb on + strand, within MIT1002_00087at 94.507 kb on + strand, within MIT1002_00087at 94.515 kb on - strand, within MIT1002_00087at 94.515 kb on - strand, within MIT1002_00087at 94.515 kb on - strand, within MIT1002_00087at 94.523 kb on + strand, within MIT1002_00087at 94.523 kb on + strand, within MIT1002_00087at 94.523 kb on + strand, within MIT1002_00087at 94.589 kb on - strand, within MIT1002_00087at 94.598 kb on + strand, within MIT1002_00087at 94.606 kb on + strand, within MIT1002_00087at 94.683 kb on - strand, within MIT1002_00087at 94.696 kb on - strand, within MIT1002_00087at 94.725 kb on + strand, within MIT1002_00087at 94.732 kb on - strand, within MIT1002_00087at 94.733 kb on - strand, within MIT1002_00087at 94.733 kb on - strand, within MIT1002_00087at 94.744 kb on + strand, within MIT1002_00087at 94.793 kb on - strand, within MIT1002_00087at 94.864 kb on + strandat 94.873 kb on - strandat 94.943 kb on + strandat 94.972 kb on - strandat 95.005 kb on - strandat 95.085 kb on - strandat 95.109 kb on + strandat 95.117 kb on - strandat 95.157 kb on + strand, within MIT1002_00088at 95.191 kb on + strand, within MIT1002_00088at 95.191 kb on + strand, within MIT1002_00088at 95.212 kb on + strand, within MIT1002_00088at 95.212 kb on + strand, within MIT1002_00088at 95.235 kb on + strand, within MIT1002_00088at 95.255 kb on - strand, within MIT1002_00088at 95.297 kb on - strand, within MIT1002_00088at 95.349 kb on + strand, within MIT1002_00088at 95.356 kb on + strand, within MIT1002_00088at 95.382 kb on - strand, within MIT1002_00088at 95.433 kb on - strand, within MIT1002_00088at 95.442 kb on + strand, within MIT1002_00088at 95.501 kb on - strand, within MIT1002_00088at 95.507 kb on + strand, within MIT1002_00088at 95.515 kb on - strand, within MIT1002_00088at 95.515 kb on - strand, within MIT1002_00088at 95.550 kb on - strand, within MIT1002_00088at 95.582 kb on + strand, within MIT1002_00088at 95.582 kb on + strand, within MIT1002_00088at 95.590 kb on - strand, within MIT1002_00088at 95.762 kb on - strandat 95.878 kb on + strandat 95.933 kb on + strandat 95.994 kb on + strandat 95.995 kb on - strandat 96.002 kb on - strandat 96.020 kb on - strandat 96.121 kb on - strandat 96.158 kb on - strandat 96.188 kb on - strand, within MIT1002_00089at 96.229 kb on + strand, within MIT1002_00089at 96.266 kb on + strand, within MIT1002_00089at 96.317 kb on + strand, within MIT1002_00089at 96.353 kb on + strand, within MIT1002_00089at 96.359 kb on - strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.378 kb on + strand, within MIT1002_00089at 96.510 kb on - strand, within MIT1002_00089at 96.531 kb on - strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.631 kb on - strand, within MIT1002_00089at 96.676 kb on + strand, within MIT1002_00089at 96.688 kb on + strand, within MIT1002_00089at 96.690 kb on - strand, within MIT1002_00089at 96.735 kb on + strand, within MIT1002_00089at 96.757 kb on - strand, within MIT1002_00089

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
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94,101 - MIT1002_00087 0.11 -0.8
94,142 + MIT1002_00087 0.15 +0.6
94,142 + MIT1002_00087 0.15 -0.4
94,142 + MIT1002_00087 0.15 +0.1
94,150 - MIT1002_00087 0.16 -0.4
94,150 - MIT1002_00087 0.16 -0.8
94,288 + MIT1002_00087 0.31 +0.6
94,296 - MIT1002_00087 0.32 +0.2
94,308 - MIT1002_00087 0.33 -0.4
94,339 - MIT1002_00087 0.36 -0.3
94,344 + MIT1002_00087 0.37 -1.5
94,362 - MIT1002_00087 0.39 -0.5
94,367 - MIT1002_00087 0.39 +0.1
94,507 + MIT1002_00087 0.55 -0.5
94,507 + MIT1002_00087 0.55 +0.1
94,515 - MIT1002_00087 0.55 -2.5
94,515 - MIT1002_00087 0.55 -1.6
94,515 - MIT1002_00087 0.55 -0.9
94,523 + MIT1002_00087 0.56 -2.5
94,523 + MIT1002_00087 0.56 -0.3
94,523 + MIT1002_00087 0.56 +0.8
94,589 - MIT1002_00087 0.63 -0.3
94,598 + MIT1002_00087 0.64 -0.1
94,606 + MIT1002_00087 0.65 -0.6
94,683 - MIT1002_00087 0.74 -1.0
94,696 - MIT1002_00087 0.75 -0.1
94,725 + MIT1002_00087 0.78 +1.0
94,732 - MIT1002_00087 0.79 -1.4
94,733 - MIT1002_00087 0.79 +1.2
94,733 - MIT1002_00087 0.79 +1.6
94,744 + MIT1002_00087 0.80 -0.6
94,793 - MIT1002_00087 0.85 +1.0
94,864 + +0.2
94,873 - -1.1
94,943 + +1.5
94,972 - -1.3
95,005 - +0.3
95,085 - +2.3
95,109 + -0.2
95,117 - -0.6
95,157 + MIT1002_00088 0.12 +1.3
95,191 + MIT1002_00088 0.17 -1.8
95,191 + MIT1002_00088 0.17 +0.8
95,212 + MIT1002_00088 0.19 +0.5
95,212 + MIT1002_00088 0.19 -1.0
95,235 + MIT1002_00088 0.22 -1.8
95,255 - MIT1002_00088 0.25 +1.1
95,297 - MIT1002_00088 0.31 -1.0
95,349 + MIT1002_00088 0.37 -1.2
95,356 + MIT1002_00088 0.38 -1.8
95,382 - MIT1002_00088 0.42 -0.4
95,433 - MIT1002_00088 0.48 -1.9
95,442 + MIT1002_00088 0.50 +0.4
95,501 - MIT1002_00088 0.57 -0.5
95,507 + MIT1002_00088 0.58 +0.1
95,515 - MIT1002_00088 0.59 +1.3
95,515 - MIT1002_00088 0.59 +0.1
95,550 - MIT1002_00088 0.64 -0.2
95,582 + MIT1002_00088 0.68 -0.0
95,582 + MIT1002_00088 0.68 +0.8
95,590 - MIT1002_00088 0.69 -1.4
95,762 - +0.5
95,878 + -1.3
95,933 + +0.1
95,994 + -0.5
95,995 - +0.5
96,002 - -1.0
96,020 - -0.4
96,121 - -0.0
96,158 - +0.3
96,188 - MIT1002_00089 0.11 +1.4
96,229 + MIT1002_00089 0.14 +0.8
96,266 + MIT1002_00089 0.16 +1.9
96,317 + MIT1002_00089 0.20 -0.2
96,353 + MIT1002_00089 0.23 -0.1
96,359 - MIT1002_00089 0.23 -2.6
96,378 + MIT1002_00089 0.25 +0.1
96,378 + MIT1002_00089 0.25 +0.1
96,378 + MIT1002_00089 0.25 -0.2
96,378 + MIT1002_00089 0.25 -1.5
96,510 - MIT1002_00089 0.34 -0.5
96,531 - MIT1002_00089 0.36 +2.5
96,544 + MIT1002_00089 0.37 -2.0
96,544 + MIT1002_00089 0.37 -2.0
96,544 + MIT1002_00089 0.37 +3.0
96,544 + MIT1002_00089 0.37 +0.1
96,544 + MIT1002_00089 0.37 +1.2
96,552 - MIT1002_00089 0.37 +0.5
96,552 - MIT1002_00089 0.37 -0.4
96,552 - MIT1002_00089 0.37 +0.6
96,631 - MIT1002_00089 0.43 -1.8
96,676 + MIT1002_00089 0.46 -1.7
96,688 + MIT1002_00089 0.47 -0.3
96,690 - MIT1002_00089 0.47 -1.3
96,735 + MIT1002_00089 0.50 +0.6
96,757 - MIT1002_00089 0.52 -0.0

Or see this region's nucleotide sequence