Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00064 and MIT1002_00065 overlap by 1 nucleotides MIT1002_00065 and MIT1002_00066 are separated by 141 nucleotides MIT1002_00066 and MIT1002_00067 are separated by 55 nucleotides MIT1002_00067 and MIT1002_00068 are separated by 103 nucleotides
MIT1002_00064: MIT1002_00064 - L-threonine 3-dehydrogenase, at 70,046 to 71,071
_00064
MIT1002_00065: MIT1002_00065 - Thiosulfate sulfurtransferase GlpE, at 71,071 to 71,382
_00065
MIT1002_00066: MIT1002_00066 - Rhomboid protease GlpG, at 71,524 to 72,387
_00066
MIT1002_00067: MIT1002_00067 - flagellar basal body-associated protein FliL-like protein, at 72,443 to 72,856
_00067
MIT1002_00068: MIT1002_00068 - Chorismate--pyruvate lyase, at 72,960 to 73,574
_00068
Position (kb) 71
72
73 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 70.557 kb on - strand, within MIT1002_00064 at 70.605 kb on - strand, within MIT1002_00064 at 70.630 kb on + strand, within MIT1002_00064 at 70.644 kb on + strand, within MIT1002_00064 at 70.652 kb on - strand, within MIT1002_00064 at 70.803 kb on - strand, within MIT1002_00064 at 70.828 kb on + strand, within MIT1002_00064 at 70.839 kb on - strand, within MIT1002_00064 at 70.918 kb on + strand, within MIT1002_00064 at 70.967 kb on - strand, within MIT1002_00064 at 71.039 kb on - strand at 71.039 kb on - strand at 71.122 kb on + strand, within MIT1002_00065 at 71.130 kb on - strand, within MIT1002_00065 at 71.149 kb on + strand, within MIT1002_00065 at 71.149 kb on + strand, within MIT1002_00065 at 71.170 kb on - strand, within MIT1002_00065 at 71.175 kb on + strand, within MIT1002_00065 at 71.175 kb on + strand, within MIT1002_00065 at 71.254 kb on + strand, within MIT1002_00065 at 71.403 kb on - strand at 71.453 kb on + strand at 71.461 kb on - strand at 71.461 kb on - strand at 71.479 kb on - strand at 71.609 kb on + strand at 71.609 kb on + strand at 71.617 kb on - strand, within MIT1002_00066 at 71.617 kb on - strand, within MIT1002_00066 at 71.617 kb on - strand, within MIT1002_00066 at 71.617 kb on - strand, within MIT1002_00066 at 71.651 kb on + strand, within MIT1002_00066 at 71.659 kb on + strand, within MIT1002_00066 at 71.659 kb on + strand, within MIT1002_00066 at 71.703 kb on + strand, within MIT1002_00066 at 71.826 kb on - strand, within MIT1002_00066 at 72.019 kb on - strand, within MIT1002_00066 at 72.064 kb on - strand, within MIT1002_00066 at 72.127 kb on + strand, within MIT1002_00066 at 72.127 kb on + strand, within MIT1002_00066 at 72.127 kb on + strand, within MIT1002_00066 at 72.135 kb on - strand, within MIT1002_00066 at 72.135 kb on - strand, within MIT1002_00066 at 72.169 kb on + strand, within MIT1002_00066 at 72.177 kb on - strand, within MIT1002_00066 at 72.225 kb on - strand, within MIT1002_00066 at 72.271 kb on + strand, within MIT1002_00066 at 72.358 kb on + strand at 72.365 kb on - strand at 72.383 kb on - strand at 72.410 kb on - strand at 72.487 kb on + strand, within MIT1002_00067 at 72.570 kb on + strand, within MIT1002_00067 at 72.570 kb on + strand, within MIT1002_00067 at 72.623 kb on - strand, within MIT1002_00067 at 72.666 kb on - strand, within MIT1002_00067 at 72.666 kb on - strand, within MIT1002_00067 at 72.691 kb on + strand, within MIT1002_00067 at 72.779 kb on + strand, within MIT1002_00067 at 72.787 kb on - strand, within MIT1002_00067 at 72.787 kb on - strand, within MIT1002_00067 at 72.856 kb on - strand at 73.053 kb on + strand, within MIT1002_00068 at 73.125 kb on + strand, within MIT1002_00068 at 73.131 kb on - strand, within MIT1002_00068 at 73.133 kb on + strand, within MIT1002_00068 at 73.200 kb on - strand, within MIT1002_00068 at 73.229 kb on + strand, within MIT1002_00068 at 73.299 kb on + strand, within MIT1002_00068 at 73.307 kb on - strand, within MIT1002_00068 at 73.307 kb on - strand, within MIT1002_00068 at 73.344 kb on - strand, within MIT1002_00068
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 7 remove 70,557 - MIT1002_00064 0.50 -0.4 70,605 - MIT1002_00064 0.54 +0.9 70,630 + MIT1002_00064 0.57 -1.9 70,644 + MIT1002_00064 0.58 +0.3 70,652 - MIT1002_00064 0.59 -1.2 70,803 - MIT1002_00064 0.74 -0.9 70,828 + MIT1002_00064 0.76 +1.1 70,839 - MIT1002_00064 0.77 -0.1 70,918 + MIT1002_00064 0.85 -1.8 70,967 - MIT1002_00064 0.90 -1.4 71,039 - +2.1 71,039 - -0.5 71,122 + MIT1002_00065 0.16 -0.5 71,130 - MIT1002_00065 0.19 +0.1 71,149 + MIT1002_00065 0.25 -0.6 71,149 + MIT1002_00065 0.25 -1.3 71,170 - MIT1002_00065 0.32 -0.4 71,175 + MIT1002_00065 0.33 +0.4 71,175 + MIT1002_00065 0.33 -1.5 71,254 + MIT1002_00065 0.59 -0.4 71,403 - +2.6 71,453 + +1.2 71,461 - -0.5 71,461 - +0.1 71,479 - -1.5 71,609 + -0.6 71,609 + -3.2 71,617 - MIT1002_00066 0.11 -4.3 71,617 - MIT1002_00066 0.11 -0.2 71,617 - MIT1002_00066 0.11 +1.6 71,617 - MIT1002_00066 0.11 -0.9 71,651 + MIT1002_00066 0.15 -3.6 71,659 + MIT1002_00066 0.16 -1.7 71,659 + MIT1002_00066 0.16 -2.9 71,703 + MIT1002_00066 0.21 -1.9 71,826 - MIT1002_00066 0.35 -1.1 72,019 - MIT1002_00066 0.57 +0.2 72,064 - MIT1002_00066 0.62 -2.6 72,127 + MIT1002_00066 0.70 +1.1 72,127 + MIT1002_00066 0.70 -3.9 72,127 + MIT1002_00066 0.70 +0.1 72,135 - MIT1002_00066 0.71 +0.1 72,135 - MIT1002_00066 0.71 +0.1 72,169 + MIT1002_00066 0.75 +0.5 72,177 - MIT1002_00066 0.76 -2.2 72,225 - MIT1002_00066 0.81 +0.2 72,271 + MIT1002_00066 0.86 -0.3 72,358 + -0.9 72,365 - +1.3 72,383 - +0.3 72,410 - +1.5 72,487 + MIT1002_00067 0.11 -0.2 72,570 + MIT1002_00067 0.31 +2.2 72,570 + MIT1002_00067 0.31 +0.0 72,623 - MIT1002_00067 0.43 -0.1 72,666 - MIT1002_00067 0.54 -1.1 72,666 - MIT1002_00067 0.54 +1.7 72,691 + MIT1002_00067 0.60 +1.6 72,779 + MIT1002_00067 0.81 +0.2 72,787 - MIT1002_00067 0.83 -0.3 72,787 - MIT1002_00067 0.83 -1.1 72,856 - -1.5 73,053 + MIT1002_00068 0.15 -0.8 73,125 + MIT1002_00068 0.27 -1.4 73,131 - MIT1002_00068 0.28 -0.8 73,133 + MIT1002_00068 0.28 +0.6 73,200 - MIT1002_00068 0.39 -3.0 73,229 + MIT1002_00068 0.44 -3.1 73,299 + MIT1002_00068 0.55 +1.6 73,307 - MIT1002_00068 0.56 -0.8 73,307 - MIT1002_00068 0.56 -2.6 73,344 - MIT1002_00068 0.62 -5.1
Or see this region's nucleotide sequence