Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00590

Experiment: biofilm; Day2; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00585 and LRK53_RS00590 are separated by 336 nucleotidesLRK53_RS00590 and LRK53_RS00595 are separated by 3 nucleotidesLRK53_RS00595 and LRK53_RS00600 are separated by 96 nucleotidesLRK53_RS00600 and LRK53_RS00605 are separated by 221 nucleotides LRK53_RS00585: LRK53_RS00585 - decarboxylating 6-phosphogluconate dehydrogenase, at 133,537 to 134,442 _RS00585 LRK53_RS00590: LRK53_RS00590 - DUF488 domain-containing protein, at 134,779 to 135,327 _RS00590 LRK53_RS00595: LRK53_RS00595 - DUF2945 domain-containing protein, at 135,331 to 135,543 _RS00595 LRK53_RS00600: LRK53_RS00600 - hypothetical protein, at 135,640 to 135,888 _RS00600 LRK53_RS00605: LRK53_RS00605 - cytochrome P450, at 136,110 to 137,261 _RS00605 Position (kb) 134 135 136Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.879 kb on + strand, within LRK53_RS00585at 133.879 kb on + strand, within LRK53_RS00585at 133.879 kb on + strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 134.077 kb on + strand, within LRK53_RS00585at 134.078 kb on - strand, within LRK53_RS00585at 134.095 kb on + strand, within LRK53_RS00585at 134.095 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.353 kb on + strandat 134.440 kb on + strandat 134.440 kb on + strandat 134.780 kb on + strandat 134.780 kb on + strandat 134.781 kb on - strandat 134.807 kb on + strandat 134.807 kb on + strandat 134.808 kb on - strandat 134.808 kb on - strandat 134.808 kb on - strandat 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.847 kb on - strand, within LRK53_RS00590at 134.847 kb on - strand, within LRK53_RS00590at 135.038 kb on + strand, within LRK53_RS00590at 135.039 kb on - strand, within LRK53_RS00590at 135.078 kb on + strand, within LRK53_RS00590at 135.135 kb on - strand, within LRK53_RS00590at 135.135 kb on - strand, within LRK53_RS00590at 135.401 kb on + strand, within LRK53_RS00595at 135.401 kb on + strand, within LRK53_RS00595at 135.401 kb on + strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.450 kb on + strand, within LRK53_RS00595at 135.488 kb on + strand, within LRK53_RS00595at 135.488 kb on + strand, within LRK53_RS00595at 135.488 kb on + strand, within LRK53_RS00595at 135.489 kb on - strand, within LRK53_RS00595at 135.489 kb on - strand, within LRK53_RS00595at 135.565 kb on - strandat 135.642 kb on - strandat 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.830 kb on + strand, within LRK53_RS00600at 135.831 kb on - strand, within LRK53_RS00600at 135.831 kb on - strand, within LRK53_RS00600at 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 136.053 kb on - strandat 136.053 kb on - strandat 136.105 kb on + strandat 136.164 kb on + strandat 136.164 kb on + strandat 136.164 kb on + strandat 136.165 kb on - strandat 136.165 kb on - strandat 136.165 kb on - strandat 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day2; NLDM; Aluminum chloride 1mM
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133,828 + LRK53_RS00585 0.32 -1.5
133,828 + LRK53_RS00585 0.32 +0.9
133,828 + LRK53_RS00585 0.32 -1.4
133,828 + LRK53_RS00585 0.32 -0.2
133,828 + LRK53_RS00585 0.32 +0.2
133,828 + LRK53_RS00585 0.32 -0.8
133,829 - LRK53_RS00585 0.32 +0.2
133,829 - LRK53_RS00585 0.32 -0.1
133,829 - LRK53_RS00585 0.32 -1.5
133,829 - LRK53_RS00585 0.32 -1.0
133,829 - LRK53_RS00585 0.32 -0.2
133,829 - LRK53_RS00585 0.32 -0.3
133,829 - LRK53_RS00585 0.32 -1.2
133,829 - LRK53_RS00585 0.32 -0.2
133,829 - LRK53_RS00585 0.32 +1.3
133,829 - LRK53_RS00585 0.32 +0.8
133,829 - LRK53_RS00585 0.32 -0.1
133,879 + LRK53_RS00585 0.38 -0.1
133,879 + LRK53_RS00585 0.38 +2.9
133,879 + LRK53_RS00585 0.38 +1.2
133,880 - LRK53_RS00585 0.38 -1.3
133,880 - LRK53_RS00585 0.38 -0.9
133,880 - LRK53_RS00585 0.38 +0.2
133,880 - LRK53_RS00585 0.38 +0.2
133,880 - LRK53_RS00585 0.38 -0.1
133,880 - LRK53_RS00585 0.38 -3.3
133,927 + LRK53_RS00585 0.43 +1.6
133,927 + LRK53_RS00585 0.43 -1.4
133,927 + LRK53_RS00585 0.43 -1.3
133,927 + LRK53_RS00585 0.43 -0.6
133,928 - LRK53_RS00585 0.43 -1.6
133,928 - LRK53_RS00585 0.43 +0.1
133,928 - LRK53_RS00585 0.43 +1.3
133,928 - LRK53_RS00585 0.43 +2.9
133,928 - LRK53_RS00585 0.43 +0.2
134,077 + LRK53_RS00585 0.60 -0.9
134,078 - LRK53_RS00585 0.60 -0.9
134,095 + LRK53_RS00585 0.62 -1.9
134,095 + LRK53_RS00585 0.62 +3.2
134,257 + LRK53_RS00585 0.79 -0.7
134,257 + LRK53_RS00585 0.79 +0.2
134,257 + LRK53_RS00585 0.79 +1.2
134,257 + LRK53_RS00585 0.79 +0.2
134,257 + LRK53_RS00585 0.79 -1.4
134,257 + LRK53_RS00585 0.79 -2.1
134,258 - LRK53_RS00585 0.80 -1.4
134,258 - LRK53_RS00585 0.80 -2.7
134,258 - LRK53_RS00585 0.80 +0.2
134,258 - LRK53_RS00585 0.80 -0.2
134,353 + -1.2
134,440 + +0.1
134,440 + +0.0
134,780 + -0.6
134,780 + +2.1
134,781 - -1.5
134,807 + -1.0
134,807 + -0.6
134,808 - +0.5
134,808 - +0.8
134,808 - +1.6
134,846 + LRK53_RS00590 0.12 -2.0
134,846 + LRK53_RS00590 0.12 +1.7
134,846 + LRK53_RS00590 0.12 -3.1
134,846 + LRK53_RS00590 0.12 -0.2
134,846 + LRK53_RS00590 0.12 -1.4
134,847 - LRK53_RS00590 0.12 -1.9
134,847 - LRK53_RS00590 0.12 -0.4
135,038 + LRK53_RS00590 0.47 -2.5
135,039 - LRK53_RS00590 0.47 -3.7
135,078 + LRK53_RS00590 0.54 -1.3
135,135 - LRK53_RS00590 0.65 +0.3
135,135 - LRK53_RS00590 0.65 +0.9
135,401 + LRK53_RS00595 0.33 -0.9
135,401 + LRK53_RS00595 0.33 +0.1
135,401 + LRK53_RS00595 0.33 -2.8
135,402 - LRK53_RS00595 0.33 -1.5
135,402 - LRK53_RS00595 0.33 -1.3
135,402 - LRK53_RS00595 0.33 -1.7
135,443 + LRK53_RS00595 0.53 -2.5
135,443 + LRK53_RS00595 0.53 +0.5
135,443 + LRK53_RS00595 0.53 -0.4
135,443 + LRK53_RS00595 0.53 +0.2
135,443 + LRK53_RS00595 0.53 -0.4
135,444 - LRK53_RS00595 0.53 -0.0
135,444 - LRK53_RS00595 0.53 -0.5
135,444 - LRK53_RS00595 0.53 -0.5
135,444 - LRK53_RS00595 0.53 +0.6
135,444 - LRK53_RS00595 0.53 +1.1
135,444 - LRK53_RS00595 0.53 +0.2
135,444 - LRK53_RS00595 0.53 +0.2
135,450 + LRK53_RS00595 0.56 -2.7
135,488 + LRK53_RS00595 0.74 +0.2
135,488 + LRK53_RS00595 0.74 -1.8
135,488 + LRK53_RS00595 0.74 -0.3
135,489 - LRK53_RS00595 0.74 -0.9
135,489 - LRK53_RS00595 0.74 +0.2
135,565 - +1.0
135,642 - -1.4
135,712 + LRK53_RS00600 0.29 +0.9
135,712 + LRK53_RS00600 0.29 -2.5
135,712 + LRK53_RS00600 0.29 +0.9
135,712 + LRK53_RS00600 0.29 +2.6
135,712 + LRK53_RS00600 0.29 -1.4
135,712 + LRK53_RS00600 0.29 -0.9
135,712 + LRK53_RS00600 0.29 +0.1
135,712 + LRK53_RS00600 0.29 -2.3
135,712 + LRK53_RS00600 0.29 -1.1
135,712 + LRK53_RS00600 0.29 -0.2
135,712 + LRK53_RS00600 0.29 -1.0
135,713 - LRK53_RS00600 0.29 -1.8
135,713 - LRK53_RS00600 0.29 +1.0
135,713 - LRK53_RS00600 0.29 +0.5
135,713 - LRK53_RS00600 0.29 -1.9
135,713 - LRK53_RS00600 0.29 -1.5
135,713 - LRK53_RS00600 0.29 -0.1
135,713 - LRK53_RS00600 0.29 +0.1
135,713 - LRK53_RS00600 0.29 -2.3
135,713 - LRK53_RS00600 0.29 -0.4
135,713 - LRK53_RS00600 0.29 +1.0
135,713 - LRK53_RS00600 0.29 +0.2
135,713 - LRK53_RS00600 0.29 -0.9
135,713 - LRK53_RS00600 0.29 +0.1
135,713 - LRK53_RS00600 0.29 +0.3
135,746 + LRK53_RS00600 0.43 -2.4
135,746 + LRK53_RS00600 0.43 +0.6
135,746 + LRK53_RS00600 0.43 -2.3
135,746 + LRK53_RS00600 0.43 +0.4
135,746 + LRK53_RS00600 0.43 +0.5
135,746 + LRK53_RS00600 0.43 -2.8
135,746 + LRK53_RS00600 0.43 +0.1
135,747 - LRK53_RS00600 0.43 +1.2
135,747 - LRK53_RS00600 0.43 -2.6
135,747 - LRK53_RS00600 0.43 -2.1
135,747 - LRK53_RS00600 0.43 -0.5
135,830 + LRK53_RS00600 0.76 +0.5
135,831 - LRK53_RS00600 0.77 -2.1
135,831 - LRK53_RS00600 0.77 -0.4
135,959 + -1.2
135,959 + +0.4
135,959 + -0.6
135,959 + -1.9
135,959 + -1.4
135,959 + +0.4
135,959 + +0.1
135,960 - -1.9
135,960 - -1.0
135,960 - +2.0
135,960 - -1.1
135,960 - +1.8
135,960 - +2.4
135,960 - +1.0
135,960 - +2.0
135,960 - +0.4
136,053 - -1.7
136,053 - +2.9
136,105 + -0.6
136,164 + -1.1
136,164 + -1.3
136,164 + +2.4
136,165 - -0.5
136,165 - -0.3
136,165 - +0.2
136,301 + LRK53_RS00605 0.17 -1.9
136,301 + LRK53_RS00605 0.17 +1.0
136,301 + LRK53_RS00605 0.17 -2.3
136,301 + LRK53_RS00605 0.17 -0.7
136,301 + LRK53_RS00605 0.17 -1.3
136,301 + LRK53_RS00605 0.17 +0.6
136,302 - LRK53_RS00605 0.17 -3.8
136,302 - LRK53_RS00605 0.17 +0.6
136,302 - LRK53_RS00605 0.17 -1.0
136,302 - LRK53_RS00605 0.17 +1.8
136,302 - LRK53_RS00605 0.17 +0.1
136,302 - LRK53_RS00605 0.17 +2.8
136,302 - LRK53_RS00605 0.17 -1.2
136,302 - LRK53_RS00605 0.17 -2.1

Or see this region's nucleotide sequence