Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39885 and QEN71_RS39890 are separated by 158 nucleotides QEN71_RS39890 and QEN71_RS39895 are separated by 60 nucleotides QEN71_RS39895 and QEN71_RS39900 are separated by 64 nucleotides QEN71_RS39900 and QEN71_RS39905 overlap by 4 nucleotides QEN71_RS39905 and QEN71_RS39910 are separated by 30 nucleotides
QEN71_RS39885: QEN71_RS39885 - IS110 family transposase, at 22,242 to 23,380
_RS39885
QEN71_RS39890: QEN71_RS39890 - transposase, at 23,539 to 23,754
_RS39890
QEN71_RS39895: QEN71_RS39895 - transposase DNA-binding-containing protein, at 23,815 to 24,657
_RS39895
QEN71_RS39900: QEN71_RS39900 - transposase, at 24,722 to 25,231
_RS39900
QEN71_RS39905: QEN71_RS39905 - IS66 family insertion sequence element accessory protein TnpB, at 25,228 to 25,572
_RS39905
QEN71_RS39910: QEN71_RS39910 - IS66 family transposase, at 25,603 to 27,153
_RS39910
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 23.485 kb on + strand at 23.501 kb on + strand at 23.519 kb on + strand at 23.519 kb on + strand at 23.520 kb on - strand at 23.520 kb on - strand at 23.673 kb on + strand, within QEN71_RS39890 at 23.674 kb on - strand, within QEN71_RS39890 at 23.674 kb on - strand, within QEN71_RS39890 at 23.674 kb on - strand, within QEN71_RS39890 at 23.677 kb on + strand, within QEN71_RS39890 at 23.678 kb on - strand, within QEN71_RS39890 at 23.678 kb on - strand, within QEN71_RS39890 at 23.678 kb on - strand, within QEN71_RS39890 at 23.678 kb on - strand, within QEN71_RS39890 at 23.767 kb on + strand at 23.767 kb on + strand at 23.768 kb on - strand at 24.719 kb on + strand at 24.719 kb on + strand at 24.791 kb on - strand, within QEN71_RS39900 at 24.845 kb on + strand, within QEN71_RS39900 at 24.845 kb on + strand, within QEN71_RS39900 at 24.845 kb on + strand, within QEN71_RS39900 at 24.846 kb on - strand, within QEN71_RS39900 at 24.847 kb on + strand, within QEN71_RS39900 at 24.847 kb on + strand, within QEN71_RS39900 at 24.847 kb on + strand, within QEN71_RS39900 at 24.848 kb on - strand, within QEN71_RS39900 at 24.943 kb on + strand, within QEN71_RS39900 at 24.944 kb on - strand, within QEN71_RS39900 at 24.980 kb on + strand, within QEN71_RS39900 at 24.995 kb on + strand, within QEN71_RS39900 at 24.995 kb on + strand, within QEN71_RS39900 at 24.996 kb on - strand, within QEN71_RS39900 at 24.996 kb on - strand, within QEN71_RS39900 at 25.093 kb on + strand, within QEN71_RS39900 at 25.094 kb on - strand, within QEN71_RS39900 at 25.094 kb on - strand, within QEN71_RS39900 at 25.119 kb on + strand, within QEN71_RS39900 at 25.119 kb on + strand, within QEN71_RS39900 at 25.119 kb on + strand, within QEN71_RS39900 at 25.119 kb on + strand, within QEN71_RS39900 at 25.119 kb on + strand, within QEN71_RS39900 at 25.120 kb on - strand, within QEN71_RS39900 at 25.196 kb on - strand at 25.196 kb on - strand at 25.570 kb on + strand at 25.570 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 23,485 + -0.6 23,501 + -0.4 23,519 + +0.4 23,519 + -0.2 23,520 - -0.7 23,520 - -0.7 23,673 + QEN71_RS39890 0.62 -0.2 23,674 - QEN71_RS39890 0.62 +0.2 23,674 - QEN71_RS39890 0.62 -0.2 23,674 - QEN71_RS39890 0.62 -1.3 23,677 + QEN71_RS39890 0.64 -2.2 23,678 - QEN71_RS39890 0.64 -0.8 23,678 - QEN71_RS39890 0.64 -0.7 23,678 - QEN71_RS39890 0.64 -0.2 23,678 - QEN71_RS39890 0.64 -0.6 23,767 + -1.4 23,767 + +0.8 23,768 - -0.1 24,719 + -0.2 24,719 + -0.6 24,791 - QEN71_RS39900 0.14 -0.1 24,845 + QEN71_RS39900 0.24 +0.7 24,845 + QEN71_RS39900 0.24 -0.3 24,845 + QEN71_RS39900 0.24 -0.5 24,846 - QEN71_RS39900 0.24 -0.3 24,847 + QEN71_RS39900 0.25 -0.6 24,847 + QEN71_RS39900 0.25 -3.4 24,847 + QEN71_RS39900 0.25 +0.5 24,848 - QEN71_RS39900 0.25 -0.0 24,943 + QEN71_RS39900 0.43 -1.0 24,944 - QEN71_RS39900 0.44 +0.3 24,980 + QEN71_RS39900 0.51 +0.3 24,995 + QEN71_RS39900 0.54 -0.5 24,995 + QEN71_RS39900 0.54 -0.6 24,996 - QEN71_RS39900 0.54 +1.0 24,996 - QEN71_RS39900 0.54 +0.7 25,093 + QEN71_RS39900 0.73 -2.5 25,094 - QEN71_RS39900 0.73 -1.4 25,094 - QEN71_RS39900 0.73 +0.7 25,119 + QEN71_RS39900 0.78 -0.6 25,119 + QEN71_RS39900 0.78 +0.2 25,119 + QEN71_RS39900 0.78 +0.6 25,119 + QEN71_RS39900 0.78 +0.3 25,119 + QEN71_RS39900 0.78 -0.8 25,120 - QEN71_RS39900 0.78 -0.2 25,196 - -0.3 25,196 - +0.3 25,570 + -0.0 25,570 + -2.2
Or see this region's nucleotide sequence