Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36790

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36785 and QEN71_RS36790 overlap by 4 nucleotidesQEN71_RS36790 and QEN71_RS36795 overlap by 16 nucleotidesQEN71_RS36795 and QEN71_RS36800 overlap by 4 nucleotides QEN71_RS36785: QEN71_RS36785 - type III secretion system ATPase SctN, at 1,632,971 to 1,634,359 _RS36785 QEN71_RS36790: QEN71_RS36790 - type III secretion system stator protein SctL, at 1,634,356 to 1,635,111 _RS36790 QEN71_RS36795: QEN71_RS36795 - type III secretion protein HrpB4, at 1,635,096 to 1,635,818 _RS36795 QEN71_RS36800: QEN71_RS36800 - type III secretion inner membrane ring lipoprotein SctJ, at 1,635,815 to 1,636,573 _RS36800 Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -2 -1 0 1at 1633.591 kb on - strand, within QEN71_RS36785at 1634.315 kb on + strandat 1634.348 kb on + strandat 1634.349 kb on - strandat 1634.349 kb on - strandat 1634.389 kb on - strandat 1634.389 kb on - strandat 1634.970 kb on - strand, within QEN71_RS36790at 1635.115 kb on + strandat 1635.465 kb on + strand, within QEN71_RS36795at 1635.916 kb on - strand, within QEN71_RS36800at 1636.064 kb on + strand, within QEN71_RS36800at 1636.064 kb on + strand, within QEN71_RS36800at 1636.065 kb on - strand, within QEN71_RS36800at 1636.065 kb on - strand, within QEN71_RS36800at 1636.065 kb on - strand, within QEN71_RS36800

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,633,591 - QEN71_RS36785 0.45 -2.0
1,634,315 + +0.3
1,634,348 + +0.5
1,634,349 - -0.8
1,634,349 - -0.3
1,634,389 - +1.0
1,634,389 - +0.5
1,634,970 - QEN71_RS36790 0.81 +0.4
1,635,115 + -0.4
1,635,465 + QEN71_RS36795 0.51 -1.3
1,635,916 - QEN71_RS36800 0.13 -1.7
1,636,064 + QEN71_RS36800 0.33 -0.7
1,636,064 + QEN71_RS36800 0.33 -0.2
1,636,065 - QEN71_RS36800 0.33 -0.2
1,636,065 - QEN71_RS36800 0.33 -0.9
1,636,065 - QEN71_RS36800 0.33 +1.4

Or see this region's nucleotide sequence