Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32385 and QEN71_RS32390 are separated by 102 nucleotides QEN71_RS32390 and QEN71_RS32395 are separated by 4 nucleotides QEN71_RS32395 and QEN71_RS32400 are separated by 215 nucleotides QEN71_RS32400 and QEN71_RS32405 are separated by 27 nucleotides
QEN71_RS32385: QEN71_RS32385 - MFS transporter, at 604,989 to 606,296
_RS32385
QEN71_RS32390: QEN71_RS32390 - LysR family transcriptional regulator, at 606,399 to 607,271
_RS32390
QEN71_RS32395: QEN71_RS32395 - DUF3563 family protein, at 607,276 to 607,413
_RS32395
QEN71_RS32400: QEN71_RS32400 - CPBP family glutamic-type intramembrane protease, at 607,629 to 608,117
_RS32400
QEN71_RS32405: QEN71_RS32405 - MFS transporter, at 608,145 to 609,353
_RS32405
Position (kb) 606
607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 605.431 kb on + strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.431 kb on + strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.432 kb on - strand, within QEN71_RS32385 at 605.503 kb on + strand, within QEN71_RS32385 at 605.504 kb on - strand, within QEN71_RS32385 at 605.509 kb on + strand, within QEN71_RS32385 at 605.509 kb on + strand, within QEN71_RS32385 at 605.510 kb on - strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.738 kb on + strand, within QEN71_RS32385 at 605.739 kb on - strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.740 kb on + strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.741 kb on - strand, within QEN71_RS32385 at 605.791 kb on + strand, within QEN71_RS32385 at 605.792 kb on - strand, within QEN71_RS32385 at 605.792 kb on - strand, within QEN71_RS32385 at 605.842 kb on + strand, within QEN71_RS32385 at 605.843 kb on - strand, within QEN71_RS32385 at 606.127 kb on + strand, within QEN71_RS32385 at 606.128 kb on - strand, within QEN71_RS32385 at 606.327 kb on + strand at 606.328 kb on - strand at 606.328 kb on - strand at 606.329 kb on + strand at 606.330 kb on - strand at 606.362 kb on + strand at 606.374 kb on + strand at 606.407 kb on - strand at 606.526 kb on + strand, within QEN71_RS32390 at 606.527 kb on - strand, within QEN71_RS32390 at 607.166 kb on - strand, within QEN71_RS32390 at 607.166 kb on - strand, within QEN71_RS32390 at 607.166 kb on - strand, within QEN71_RS32390 at 607.170 kb on + strand, within QEN71_RS32390 at 607.171 kb on - strand, within QEN71_RS32390 at 607.344 kb on - strand, within QEN71_RS32395 at 607.344 kb on - strand, within QEN71_RS32395 at 607.344 kb on - strand, within QEN71_RS32395 at 607.403 kb on + strand at 607.436 kb on + strand at 607.437 kb on - strand at 607.437 kb on - strand at 607.460 kb on - strand at 607.504 kb on + strand at 607.505 kb on - strand at 607.505 kb on - strand at 607.505 kb on - strand at 607.560 kb on + strand at 607.561 kb on - strand at 607.561 kb on - strand at 607.788 kb on - strand, within QEN71_RS32400 at 607.788 kb on - strand, within QEN71_RS32400 at 607.789 kb on + strand, within QEN71_RS32400 at 607.789 kb on + strand, within QEN71_RS32400 at 607.789 kb on + strand, within QEN71_RS32400 at 607.790 kb on - strand, within QEN71_RS32400 at 607.790 kb on - strand, within QEN71_RS32400 at 607.930 kb on + strand, within QEN71_RS32400 at 607.930 kb on + strand, within QEN71_RS32400 at 608.024 kb on - strand, within QEN71_RS32400 at 608.182 kb on + strand at 608.183 kb on - strand at 608.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 605,431 + QEN71_RS32385 0.34 -0.1 605,431 + QEN71_RS32385 0.34 -1.9 605,431 + QEN71_RS32385 0.34 -0.9 605,432 - QEN71_RS32385 0.34 -2.7 605,432 - QEN71_RS32385 0.34 +1.0 605,432 - QEN71_RS32385 0.34 -0.5 605,503 + QEN71_RS32385 0.39 -0.9 605,504 - QEN71_RS32385 0.39 -0.6 605,509 + QEN71_RS32385 0.40 +0.3 605,509 + QEN71_RS32385 0.40 -0.2 605,510 - QEN71_RS32385 0.40 +2.9 605,738 + QEN71_RS32385 0.57 -0.3 605,738 + QEN71_RS32385 0.57 +0.3 605,738 + QEN71_RS32385 0.57 -0.2 605,739 - QEN71_RS32385 0.57 -0.0 605,740 + QEN71_RS32385 0.57 +1.5 605,740 + QEN71_RS32385 0.57 +0.4 605,740 + QEN71_RS32385 0.57 +0.5 605,741 - QEN71_RS32385 0.57 +0.2 605,741 - QEN71_RS32385 0.57 -1.3 605,741 - QEN71_RS32385 0.57 -1.3 605,741 - QEN71_RS32385 0.57 +0.8 605,741 - QEN71_RS32385 0.57 +0.1 605,791 + QEN71_RS32385 0.61 -0.6 605,792 - QEN71_RS32385 0.61 +1.0 605,792 - QEN71_RS32385 0.61 -0.9 605,842 + QEN71_RS32385 0.65 +0.6 605,843 - QEN71_RS32385 0.65 +0.4 606,127 + QEN71_RS32385 0.87 -0.4 606,128 - QEN71_RS32385 0.87 +0.0 606,327 + -0.3 606,328 - +1.1 606,328 - +0.0 606,329 + -1.4 606,330 - +1.3 606,362 + -0.6 606,374 + -0.3 606,407 - +1.4 606,526 + QEN71_RS32390 0.15 +0.5 606,527 - QEN71_RS32390 0.15 -1.3 607,166 - QEN71_RS32390 0.88 -0.3 607,166 - QEN71_RS32390 0.88 +0.1 607,166 - QEN71_RS32390 0.88 +1.3 607,170 + QEN71_RS32390 0.88 -0.3 607,171 - QEN71_RS32390 0.88 -3.5 607,344 - QEN71_RS32395 0.49 -2.5 607,344 - QEN71_RS32395 0.49 -0.1 607,344 - QEN71_RS32395 0.49 -0.4 607,403 + -1.0 607,436 + -0.4 607,437 - +0.6 607,437 - -0.9 607,460 - -1.5 607,504 + +0.7 607,505 - -0.1 607,505 - +0.2 607,505 - -1.3 607,560 + -0.4 607,561 - -0.2 607,561 - -0.8 607,788 - QEN71_RS32400 0.33 +1.2 607,788 - QEN71_RS32400 0.33 +2.2 607,789 + QEN71_RS32400 0.33 -0.9 607,789 + QEN71_RS32400 0.33 -0.5 607,789 + QEN71_RS32400 0.33 +0.4 607,790 - QEN71_RS32400 0.33 -0.4 607,790 - QEN71_RS32400 0.33 -0.8 607,930 + QEN71_RS32400 0.62 +0.3 607,930 + QEN71_RS32400 0.62 +0.2 608,024 - QEN71_RS32400 0.81 -0.2 608,182 + -0.6 608,183 - -0.8 608,200 + -0.1
Or see this region's nucleotide sequence