Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31340 and QEN71_RS31345 are separated by 71 nucleotides QEN71_RS31345 and QEN71_RS31350 overlap by 1 nucleotides QEN71_RS31350 and QEN71_RS31355 are separated by 38 nucleotides QEN71_RS31355 and QEN71_RS31360 are separated by 48 nucleotides
QEN71_RS31340: QEN71_RS31340 - amidohydrolase family protein, at 379,167 to 380,015
_RS31340
QEN71_RS31345: QEN71_RS31345 - aldolase/citrate lyase family protein, at 380,087 to 380,944
_RS31345
QEN71_RS31350: QEN71_RS31350 - acetolactate synthase large subunit, at 380,944 to 382,494
_RS31350
QEN71_RS31355: QEN71_RS31355 - phosphate ABC transporter substrate-binding protein, at 382,533 to 383,426
_RS31355
QEN71_RS31360: QEN71_RS31360 - MFS transporter, at 383,475 to 384,776
_RS31360
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 380.237 kb on + strand, within QEN71_RS31345 at 380.270 kb on + strand, within QEN71_RS31345 at 380.270 kb on + strand, within QEN71_RS31345 at 380.270 kb on + strand, within QEN71_RS31345 at 380.270 kb on + strand, within QEN71_RS31345 at 380.270 kb on + strand, within QEN71_RS31345 at 380.271 kb on - strand, within QEN71_RS31345 at 380.271 kb on - strand, within QEN71_RS31345 at 380.271 kb on - strand, within QEN71_RS31345 at 380.444 kb on + strand, within QEN71_RS31345 at 380.445 kb on - strand, within QEN71_RS31345 at 380.511 kb on + strand, within QEN71_RS31345 at 380.570 kb on + strand, within QEN71_RS31345 at 380.747 kb on + strand, within QEN71_RS31345 at 380.903 kb on + strand at 380.903 kb on + strand at 380.903 kb on + strand at 380.903 kb on + strand at 380.904 kb on - strand at 380.904 kb on - strand at 380.904 kb on - strand at 380.939 kb on + strand at 380.940 kb on - strand at 380.940 kb on - strand at 381.262 kb on + strand, within QEN71_RS31350 at 381.263 kb on - strand, within QEN71_RS31350 at 381.426 kb on + strand, within QEN71_RS31350 at 381.426 kb on + strand, within QEN71_RS31350 at 381.426 kb on + strand, within QEN71_RS31350 at 381.427 kb on - strand, within QEN71_RS31350 at 381.736 kb on + strand, within QEN71_RS31350 at 381.744 kb on + strand, within QEN71_RS31350 at 381.744 kb on + strand, within QEN71_RS31350 at 381.745 kb on - strand, within QEN71_RS31350 at 382.198 kb on + strand, within QEN71_RS31350 at 382.198 kb on + strand, within QEN71_RS31350 at 382.199 kb on - strand, within QEN71_RS31350 at 382.199 kb on - strand, within QEN71_RS31350 at 382.199 kb on - strand, within QEN71_RS31350 at 382.273 kb on + strand, within QEN71_RS31350 at 382.274 kb on - strand, within QEN71_RS31350 at 382.274 kb on - strand, within QEN71_RS31350 at 382.492 kb on + strand at 382.510 kb on - strand at 382.816 kb on - strand, within QEN71_RS31355 at 382.816 kb on - strand, within QEN71_RS31355 at 382.930 kb on - strand, within QEN71_RS31355 at 383.407 kb on + strand at 383.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 380,237 + QEN71_RS31345 0.17 -0.2 380,270 + QEN71_RS31345 0.21 +0.8 380,270 + QEN71_RS31345 0.21 +0.2 380,270 + QEN71_RS31345 0.21 -0.5 380,270 + QEN71_RS31345 0.21 -0.1 380,270 + QEN71_RS31345 0.21 -0.9 380,271 - QEN71_RS31345 0.21 -0.2 380,271 - QEN71_RS31345 0.21 -0.3 380,271 - QEN71_RS31345 0.21 +0.3 380,444 + QEN71_RS31345 0.42 -0.0 380,445 - QEN71_RS31345 0.42 -2.2 380,511 + QEN71_RS31345 0.49 -0.1 380,570 + QEN71_RS31345 0.56 -1.0 380,747 + QEN71_RS31345 0.77 +0.6 380,903 + +1.8 380,903 + +0.5 380,903 + -0.2 380,903 + +0.2 380,904 - -1.9 380,904 - +0.7 380,904 - +0.0 380,939 + -1.1 380,940 - +0.4 380,940 - -1.8 381,262 + QEN71_RS31350 0.21 -0.3 381,263 - QEN71_RS31350 0.21 +1.8 381,426 + QEN71_RS31350 0.31 -0.3 381,426 + QEN71_RS31350 0.31 +0.0 381,426 + QEN71_RS31350 0.31 -1.0 381,427 - QEN71_RS31350 0.31 -0.4 381,736 + QEN71_RS31350 0.51 -0.1 381,744 + QEN71_RS31350 0.52 +2.2 381,744 + QEN71_RS31350 0.52 -0.0 381,745 - QEN71_RS31350 0.52 -1.1 382,198 + QEN71_RS31350 0.81 +0.2 382,198 + QEN71_RS31350 0.81 +1.0 382,199 - QEN71_RS31350 0.81 -0.7 382,199 - QEN71_RS31350 0.81 -0.2 382,199 - QEN71_RS31350 0.81 +1.1 382,273 + QEN71_RS31350 0.86 -0.4 382,274 - QEN71_RS31350 0.86 -1.2 382,274 - QEN71_RS31350 0.86 -0.2 382,492 + +0.5 382,510 - -0.0 382,816 - QEN71_RS31355 0.32 -1.3 382,816 - QEN71_RS31355 0.32 -2.1 382,930 - QEN71_RS31355 0.44 +1.1 383,407 + +0.0 383,408 - +0.4
Or see this region's nucleotide sequence