Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30575

Experiment: Motility_inner_sample

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS30565 and QEN71_RS30570 are separated by 68 nucleotidesQEN71_RS30570 and QEN71_RS30575 are separated by 299 nucleotidesQEN71_RS30575 and QEN71_RS30580 are separated by 54 nucleotides QEN71_RS30565: QEN71_RS30565 - MarR family transcriptional regulator, at 195,974 to 196,525 _RS30565 QEN71_RS30570: QEN71_RS30570 - DUF2945 domain-containing protein, at 196,594 to 196,812 _RS30570 QEN71_RS30575: QEN71_RS30575 - esterase, at 197,112 to 197,789 _RS30575 QEN71_RS30580: QEN71_RS30580 - ATP-binding protein, at 197,844 to 199,466 _RS30580 Position (kb) 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.127 kb on + strand, within QEN71_RS30565at 196.735 kb on + strand, within QEN71_RS30570at 196.735 kb on + strand, within QEN71_RS30570at 196.735 kb on + strand, within QEN71_RS30570at 196.736 kb on - strand, within QEN71_RS30570at 197.198 kb on - strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.229 kb on + strand, within QEN71_RS30575at 197.230 kb on - strand, within QEN71_RS30575at 197.230 kb on - strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.319 kb on + strand, within QEN71_RS30575at 197.396 kb on - strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.449 kb on + strand, within QEN71_RS30575at 197.450 kb on - strand, within QEN71_RS30575at 197.514 kb on + strand, within QEN71_RS30575at 197.514 kb on + strand, within QEN71_RS30575at 197.514 kb on + strand, within QEN71_RS30575at 197.515 kb on - strand, within QEN71_RS30575at 197.703 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.715 kb on + strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.716 kb on - strand, within QEN71_RS30575at 197.831 kb on + strandat 197.831 kb on + strandat 197.831 kb on + strandat 197.832 kb on - strandat 197.832 kb on - strandat 197.858 kb on - strandat 198.000 kb on + strandat 198.001 kb on - strandat 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.067 kb on - strand, within QEN71_RS30580at 198.129 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.243 kb on + strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.244 kb on - strand, within QEN71_RS30580at 198.357 kb on - strand, within QEN71_RS30580at 198.402 kb on + strand, within QEN71_RS30580at 198.432 kb on + strand, within QEN71_RS30580at 198.681 kb on + strand, within QEN71_RS30580at 198.681 kb on + strand, within QEN71_RS30580at 198.681 kb on + strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.682 kb on - strand, within QEN71_RS30580at 198.716 kb on + strand, within QEN71_RS30580at 198.716 kb on + strand, within QEN71_RS30580at 198.717 kb on - strand, within QEN71_RS30580at 198.717 kb on - strand, within QEN71_RS30580at 198.747 kb on + strand, within QEN71_RS30580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
remove
196,127 + QEN71_RS30565 0.28 -1.0
196,735 + QEN71_RS30570 0.64 +0.0
196,735 + QEN71_RS30570 0.64 +1.1
196,735 + QEN71_RS30570 0.64 -0.9
196,736 - QEN71_RS30570 0.65 -1.2
197,198 - QEN71_RS30575 0.13 +1.9
197,229 + QEN71_RS30575 0.17 -0.3
197,229 + QEN71_RS30575 0.17 +0.2
197,229 + QEN71_RS30575 0.17 +0.9
197,229 + QEN71_RS30575 0.17 -0.4
197,229 + QEN71_RS30575 0.17 -1.0
197,230 - QEN71_RS30575 0.17 +0.4
197,230 - QEN71_RS30575 0.17 -3.2
197,319 + QEN71_RS30575 0.31 +0.5
197,319 + QEN71_RS30575 0.31 +0.8
197,319 + QEN71_RS30575 0.31 +0.1
197,319 + QEN71_RS30575 0.31 -0.2
197,396 - QEN71_RS30575 0.42 +1.2
197,449 + QEN71_RS30575 0.50 +0.0
197,449 + QEN71_RS30575 0.50 -1.1
197,449 + QEN71_RS30575 0.50 -0.7
197,449 + QEN71_RS30575 0.50 -1.0
197,449 + QEN71_RS30575 0.50 -0.2
197,450 - QEN71_RS30575 0.50 -1.0
197,514 + QEN71_RS30575 0.59 -1.7
197,514 + QEN71_RS30575 0.59 +0.5
197,514 + QEN71_RS30575 0.59 +0.1
197,515 - QEN71_RS30575 0.59 -1.7
197,703 + QEN71_RS30575 0.87 +0.5
197,715 + QEN71_RS30575 0.89 +0.5
197,715 + QEN71_RS30575 0.89 -0.9
197,715 + QEN71_RS30575 0.89 -1.0
197,715 + QEN71_RS30575 0.89 -0.6
197,716 - QEN71_RS30575 0.89 -0.1
197,716 - QEN71_RS30575 0.89 +0.2
197,716 - QEN71_RS30575 0.89 -2.5
197,716 - QEN71_RS30575 0.89 -0.6
197,716 - QEN71_RS30575 0.89 +0.9
197,831 + -0.4
197,831 + +0.9
197,831 + +0.6
197,832 - -0.3
197,832 - -1.2
197,858 - -0.5
198,000 + -1.3
198,001 - -2.2
198,067 - QEN71_RS30580 0.14 +0.3
198,067 - QEN71_RS30580 0.14 -0.5
198,067 - QEN71_RS30580 0.14 +0.1
198,067 - QEN71_RS30580 0.14 +0.6
198,067 - QEN71_RS30580 0.14 -0.6
198,129 + QEN71_RS30580 0.18 -0.5
198,243 + QEN71_RS30580 0.25 +1.7
198,243 + QEN71_RS30580 0.25 -0.4
198,243 + QEN71_RS30580 0.25 +0.3
198,243 + QEN71_RS30580 0.25 +0.0
198,243 + QEN71_RS30580 0.25 -0.4
198,243 + QEN71_RS30580 0.25 -1.8
198,243 + QEN71_RS30580 0.25 -1.2
198,243 + QEN71_RS30580 0.25 +0.4
198,243 + QEN71_RS30580 0.25 -0.8
198,244 - QEN71_RS30580 0.25 +1.0
198,244 - QEN71_RS30580 0.25 -0.5
198,244 - QEN71_RS30580 0.25 +0.3
198,244 - QEN71_RS30580 0.25 -0.0
198,357 - QEN71_RS30580 0.32 -1.0
198,402 + QEN71_RS30580 0.34 +0.5
198,432 + QEN71_RS30580 0.36 +1.4
198,681 + QEN71_RS30580 0.52 +0.2
198,681 + QEN71_RS30580 0.52 -0.7
198,681 + QEN71_RS30580 0.52 +0.6
198,682 - QEN71_RS30580 0.52 +0.3
198,682 - QEN71_RS30580 0.52 -0.0
198,682 - QEN71_RS30580 0.52 -1.4
198,682 - QEN71_RS30580 0.52 -0.5
198,716 + QEN71_RS30580 0.54 +1.2
198,716 + QEN71_RS30580 0.54 +0.3
198,717 - QEN71_RS30580 0.54 -0.6
198,717 - QEN71_RS30580 0.54 -0.1
198,747 + QEN71_RS30580 0.56 +0.6

Or see this region's nucleotide sequence