Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28920

Experiment: Motility_inner_sample

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS28910 and QEN71_RS28915 are separated by 11 nucleotidesQEN71_RS28915 and QEN71_RS28920 are separated by 107 nucleotidesQEN71_RS28920 and QEN71_RS28925 are separated by 239 nucleotides QEN71_RS28910: QEN71_RS28910 - flagellar hook assembly protein FlgD, at 6,409,448 to 6,410,158 _RS28910 QEN71_RS28915: QEN71_RS28915 - flagellar basal body rod protein FlgC, at 6,410,170 to 6,410,595 _RS28915 QEN71_RS28920: QEN71_RS28920 - flagellar basal body rod protein FlgB, at 6,410,703 to 6,411,194 _RS28920 QEN71_RS28925: QEN71_RS28925 - flagellar basal body P-ring formation chaperone FlgA, at 6,411,434 to 6,412,738 _RS28925 Position (kb) 6410 6411 6412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6410.140 kb on + strandat 6410.146 kb on + strandat 6410.146 kb on + strandat 6410.147 kb on - strandat 6410.240 kb on + strand, within QEN71_RS28915at 6410.240 kb on + strand, within QEN71_RS28915at 6410.240 kb on + strand, within QEN71_RS28915at 6410.306 kb on + strand, within QEN71_RS28915at 6410.342 kb on + strand, within QEN71_RS28915at 6410.342 kb on + strand, within QEN71_RS28915at 6410.342 kb on + strand, within QEN71_RS28915at 6410.342 kb on + strand, within QEN71_RS28915at 6410.342 kb on + strand, within QEN71_RS28915at 6410.343 kb on - strand, within QEN71_RS28915at 6410.343 kb on - strand, within QEN71_RS28915at 6410.343 kb on - strand, within QEN71_RS28915at 6410.343 kb on - strand, within QEN71_RS28915at 6410.468 kb on + strand, within QEN71_RS28915at 6410.468 kb on + strand, within QEN71_RS28915at 6410.468 kb on + strand, within QEN71_RS28915at 6410.468 kb on + strand, within QEN71_RS28915at 6410.469 kb on - strand, within QEN71_RS28915at 6410.469 kb on - strand, within QEN71_RS28915at 6410.469 kb on - strand, within QEN71_RS28915at 6410.469 kb on - strand, within QEN71_RS28915at 6410.469 kb on - strand, within QEN71_RS28915at 6410.469 kb on - strand, within QEN71_RS28915at 6410.493 kb on + strand, within QEN71_RS28915at 6410.631 kb on + strandat 6410.632 kb on - strandat 6410.632 kb on - strandat 6410.632 kb on - strandat 6410.632 kb on - strandat 6410.632 kb on - strandat 6410.639 kb on + strandat 6410.654 kb on + strandat 6410.654 kb on + strandat 6410.654 kb on + strandat 6410.655 kb on - strandat 6410.655 kb on - strandat 6410.655 kb on - strandat 6410.655 kb on - strandat 6410.655 kb on - strandat 6410.655 kb on - strandat 6410.682 kb on + strandat 6410.683 kb on - strandat 6410.683 kb on - strandat 6411.082 kb on + strand, within QEN71_RS28920at 6411.083 kb on - strand, within QEN71_RS28920at 6411.327 kb on + strandat 6411.327 kb on + strandat 6411.327 kb on + strandat 6411.327 kb on + strandat 6411.328 kb on - strandat 6411.339 kb on + strandat 6411.359 kb on + strandat 6411.359 kb on + strandat 6411.360 kb on - strandat 6411.360 kb on - strandat 6411.390 kb on + strandat 6411.390 kb on + strandat 6411.390 kb on + strandat 6411.391 kb on - strandat 6411.405 kb on - strandat 6411.405 kb on - strandat 6411.836 kb on - strand, within QEN71_RS28925at 6411.836 kb on - strand, within QEN71_RS28925at 6411.836 kb on - strand, within QEN71_RS28925at 6411.838 kb on + strand, within QEN71_RS28925at 6411.838 kb on + strand, within QEN71_RS28925at 6411.838 kb on + strand, within QEN71_RS28925at 6411.839 kb on - strand, within QEN71_RS28925at 6411.839 kb on - strand, within QEN71_RS28925at 6411.844 kb on + strand, within QEN71_RS28925at 6411.844 kb on + strand, within QEN71_RS28925at 6411.845 kb on - strand, within QEN71_RS28925at 6411.845 kb on - strand, within QEN71_RS28925at 6411.845 kb on - strand, within QEN71_RS28925at 6412.158 kb on - strand, within QEN71_RS28925at 6412.158 kb on - strand, within QEN71_RS28925at 6412.158 kb on - strand, within QEN71_RS28925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
remove
6,410,140 + +0.6
6,410,146 + -3.4
6,410,146 + -2.4
6,410,147 - -1.5
6,410,240 + QEN71_RS28915 0.16 -0.1
6,410,240 + QEN71_RS28915 0.16 -1.8
6,410,240 + QEN71_RS28915 0.16 -0.9
6,410,306 + QEN71_RS28915 0.32 -0.1
6,410,342 + QEN71_RS28915 0.40 -1.9
6,410,342 + QEN71_RS28915 0.40 -2.9
6,410,342 + QEN71_RS28915 0.40 -1.2
6,410,342 + QEN71_RS28915 0.40 -2.7
6,410,342 + QEN71_RS28915 0.40 -0.9
6,410,343 - QEN71_RS28915 0.41 -1.5
6,410,343 - QEN71_RS28915 0.41 +0.3
6,410,343 - QEN71_RS28915 0.41 -1.8
6,410,343 - QEN71_RS28915 0.41 -1.7
6,410,468 + QEN71_RS28915 0.70 -1.8
6,410,468 + QEN71_RS28915 0.70 -0.9
6,410,468 + QEN71_RS28915 0.70 -0.7
6,410,468 + QEN71_RS28915 0.70 -1.2
6,410,469 - QEN71_RS28915 0.70 -0.4
6,410,469 - QEN71_RS28915 0.70 -1.5
6,410,469 - QEN71_RS28915 0.70 -2.8
6,410,469 - QEN71_RS28915 0.70 -1.4
6,410,469 - QEN71_RS28915 0.70 -0.1
6,410,469 - QEN71_RS28915 0.70 +1.2
6,410,493 + QEN71_RS28915 0.76 -0.9
6,410,631 + -4.2
6,410,632 - -0.9
6,410,632 - -0.3
6,410,632 - -0.8
6,410,632 - +0.1
6,410,632 - -1.7
6,410,639 + -1.5
6,410,654 + -1.9
6,410,654 + -1.1
6,410,654 + -1.1
6,410,655 - +0.5
6,410,655 - -0.9
6,410,655 - +0.1
6,410,655 - +0.2
6,410,655 - +0.2
6,410,655 - +1.2
6,410,682 + -1.7
6,410,683 - +0.2
6,410,683 - +0.2
6,411,082 + QEN71_RS28920 0.77 -1.9
6,411,083 - QEN71_RS28920 0.77 -3.5
6,411,327 + -1.1
6,411,327 + -1.2
6,411,327 + -2.2
6,411,327 + -3.4
6,411,328 - +0.4
6,411,339 + -0.9
6,411,359 + -2.2
6,411,359 + -0.7
6,411,360 - -3.9
6,411,360 - -1.8
6,411,390 + +1.9
6,411,390 + -1.5
6,411,390 + +0.3
6,411,391 - -0.1
6,411,405 - +1.2
6,411,405 - +1.2
6,411,836 - QEN71_RS28925 0.31 -0.7
6,411,836 - QEN71_RS28925 0.31 -2.9
6,411,836 - QEN71_RS28925 0.31 -0.9
6,411,838 + QEN71_RS28925 0.31 -2.7
6,411,838 + QEN71_RS28925 0.31 -1.1
6,411,838 + QEN71_RS28925 0.31 -2.6
6,411,839 - QEN71_RS28925 0.31 -0.3
6,411,839 - QEN71_RS28925 0.31 -2.5
6,411,844 + QEN71_RS28925 0.31 -0.7
6,411,844 + QEN71_RS28925 0.31 -1.1
6,411,845 - QEN71_RS28925 0.31 -2.7
6,411,845 - QEN71_RS28925 0.31 -2.8
6,411,845 - QEN71_RS28925 0.31 -1.2
6,412,158 - QEN71_RS28925 0.55 -1.5
6,412,158 - QEN71_RS28925 0.55 -0.7
6,412,158 - QEN71_RS28925 0.55 -0.1

Or see this region's nucleotide sequence