Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS28910 and QEN71_RS28915 are separated by 11 nucleotides QEN71_RS28915 and QEN71_RS28920 are separated by 107 nucleotides QEN71_RS28920 and QEN71_RS28925 are separated by 239 nucleotides
QEN71_RS28910: QEN71_RS28910 - flagellar hook assembly protein FlgD, at 6,409,448 to 6,410,158
_RS28910
QEN71_RS28915: QEN71_RS28915 - flagellar basal body rod protein FlgC, at 6,410,170 to 6,410,595
_RS28915
QEN71_RS28920: QEN71_RS28920 - flagellar basal body rod protein FlgB, at 6,410,703 to 6,411,194
_RS28920
QEN71_RS28925: QEN71_RS28925 - flagellar basal body P-ring formation chaperone FlgA, at 6,411,434 to 6,412,738
_RS28925
Position (kb)
6410
6411
6412 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 6410.140 kb on + strand at 6410.146 kb on + strand at 6410.146 kb on + strand at 6410.147 kb on - strand at 6410.240 kb on + strand, within QEN71_RS28915 at 6410.240 kb on + strand, within QEN71_RS28915 at 6410.240 kb on + strand, within QEN71_RS28915 at 6410.306 kb on + strand, within QEN71_RS28915 at 6410.342 kb on + strand, within QEN71_RS28915 at 6410.342 kb on + strand, within QEN71_RS28915 at 6410.342 kb on + strand, within QEN71_RS28915 at 6410.342 kb on + strand, within QEN71_RS28915 at 6410.342 kb on + strand, within QEN71_RS28915 at 6410.343 kb on - strand, within QEN71_RS28915 at 6410.343 kb on - strand, within QEN71_RS28915 at 6410.343 kb on - strand, within QEN71_RS28915 at 6410.343 kb on - strand, within QEN71_RS28915 at 6410.468 kb on + strand, within QEN71_RS28915 at 6410.468 kb on + strand, within QEN71_RS28915 at 6410.468 kb on + strand, within QEN71_RS28915 at 6410.468 kb on + strand, within QEN71_RS28915 at 6410.469 kb on - strand, within QEN71_RS28915 at 6410.469 kb on - strand, within QEN71_RS28915 at 6410.469 kb on - strand, within QEN71_RS28915 at 6410.469 kb on - strand, within QEN71_RS28915 at 6410.469 kb on - strand, within QEN71_RS28915 at 6410.469 kb on - strand, within QEN71_RS28915 at 6410.493 kb on + strand, within QEN71_RS28915 at 6410.631 kb on + strand at 6410.632 kb on - strand at 6410.632 kb on - strand at 6410.632 kb on - strand at 6410.632 kb on - strand at 6410.632 kb on - strand at 6410.639 kb on + strand at 6410.654 kb on + strand at 6410.654 kb on + strand at 6410.654 kb on + strand at 6410.655 kb on - strand at 6410.655 kb on - strand at 6410.655 kb on - strand at 6410.655 kb on - strand at 6410.655 kb on - strand at 6410.655 kb on - strand at 6410.682 kb on + strand at 6410.683 kb on - strand at 6410.683 kb on - strand at 6411.082 kb on + strand, within QEN71_RS28920 at 6411.083 kb on - strand, within QEN71_RS28920 at 6411.327 kb on + strand at 6411.327 kb on + strand at 6411.327 kb on + strand at 6411.327 kb on + strand at 6411.328 kb on - strand at 6411.339 kb on + strand at 6411.359 kb on + strand at 6411.359 kb on + strand at 6411.360 kb on - strand at 6411.360 kb on - strand at 6411.390 kb on + strand at 6411.390 kb on + strand at 6411.390 kb on + strand at 6411.391 kb on - strand at 6411.405 kb on - strand at 6411.405 kb on - strand at 6411.836 kb on - strand, within QEN71_RS28925 at 6411.836 kb on - strand, within QEN71_RS28925 at 6411.836 kb on - strand, within QEN71_RS28925 at 6411.838 kb on + strand, within QEN71_RS28925 at 6411.838 kb on + strand, within QEN71_RS28925 at 6411.838 kb on + strand, within QEN71_RS28925 at 6411.839 kb on - strand, within QEN71_RS28925 at 6411.839 kb on - strand, within QEN71_RS28925 at 6411.844 kb on + strand, within QEN71_RS28925 at 6411.844 kb on + strand, within QEN71_RS28925 at 6411.845 kb on - strand, within QEN71_RS28925 at 6411.845 kb on - strand, within QEN71_RS28925 at 6411.845 kb on - strand, within QEN71_RS28925 at 6412.158 kb on - strand, within QEN71_RS28925 at 6412.158 kb on - strand, within QEN71_RS28925 at 6412.158 kb on - strand, within QEN71_RS28925
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 6,410,140 + +0.6 6,410,146 + -3.4 6,410,146 + -2.4 6,410,147 - -1.5 6,410,240 + QEN71_RS28915 0.16 -0.1 6,410,240 + QEN71_RS28915 0.16 -1.8 6,410,240 + QEN71_RS28915 0.16 -0.9 6,410,306 + QEN71_RS28915 0.32 -0.1 6,410,342 + QEN71_RS28915 0.40 -1.9 6,410,342 + QEN71_RS28915 0.40 -2.9 6,410,342 + QEN71_RS28915 0.40 -1.2 6,410,342 + QEN71_RS28915 0.40 -2.7 6,410,342 + QEN71_RS28915 0.40 -0.9 6,410,343 - QEN71_RS28915 0.41 -1.5 6,410,343 - QEN71_RS28915 0.41 +0.3 6,410,343 - QEN71_RS28915 0.41 -1.8 6,410,343 - QEN71_RS28915 0.41 -1.7 6,410,468 + QEN71_RS28915 0.70 -1.8 6,410,468 + QEN71_RS28915 0.70 -0.9 6,410,468 + QEN71_RS28915 0.70 -0.7 6,410,468 + QEN71_RS28915 0.70 -1.2 6,410,469 - QEN71_RS28915 0.70 -0.4 6,410,469 - QEN71_RS28915 0.70 -1.5 6,410,469 - QEN71_RS28915 0.70 -2.8 6,410,469 - QEN71_RS28915 0.70 -1.4 6,410,469 - QEN71_RS28915 0.70 -0.1 6,410,469 - QEN71_RS28915 0.70 +1.2 6,410,493 + QEN71_RS28915 0.76 -0.9 6,410,631 + -4.2 6,410,632 - -0.9 6,410,632 - -0.3 6,410,632 - -0.8 6,410,632 - +0.1 6,410,632 - -1.7 6,410,639 + -1.5 6,410,654 + -1.9 6,410,654 + -1.1 6,410,654 + -1.1 6,410,655 - +0.5 6,410,655 - -0.9 6,410,655 - +0.1 6,410,655 - +0.2 6,410,655 - +0.2 6,410,655 - +1.2 6,410,682 + -1.7 6,410,683 - +0.2 6,410,683 - +0.2 6,411,082 + QEN71_RS28920 0.77 -1.9 6,411,083 - QEN71_RS28920 0.77 -3.5 6,411,327 + -1.1 6,411,327 + -1.2 6,411,327 + -2.2 6,411,327 + -3.4 6,411,328 - +0.4 6,411,339 + -0.9 6,411,359 + -2.2 6,411,359 + -0.7 6,411,360 - -3.9 6,411,360 - -1.8 6,411,390 + +1.9 6,411,390 + -1.5 6,411,390 + +0.3 6,411,391 - -0.1 6,411,405 - +1.2 6,411,405 - +1.2 6,411,836 - QEN71_RS28925 0.31 -0.7 6,411,836 - QEN71_RS28925 0.31 -2.9 6,411,836 - QEN71_RS28925 0.31 -0.9 6,411,838 + QEN71_RS28925 0.31 -2.7 6,411,838 + QEN71_RS28925 0.31 -1.1 6,411,838 + QEN71_RS28925 0.31 -2.6 6,411,839 - QEN71_RS28925 0.31 -0.3 6,411,839 - QEN71_RS28925 0.31 -2.5 6,411,844 + QEN71_RS28925 0.31 -0.7 6,411,844 + QEN71_RS28925 0.31 -1.1 6,411,845 - QEN71_RS28925 0.31 -2.7 6,411,845 - QEN71_RS28925 0.31 -2.8 6,411,845 - QEN71_RS28925 0.31 -1.2 6,412,158 - QEN71_RS28925 0.55 -1.5 6,412,158 - QEN71_RS28925 0.55 -0.7 6,412,158 - QEN71_RS28925 0.55 -0.1
Or see this region's nucleotide sequence