Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28105

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28100 and QEN71_RS28105 are separated by 126 nucleotidesQEN71_RS28105 and QEN71_RS28110 are separated by 279 nucleotides QEN71_RS28100: QEN71_RS28100 - cytochrome c biogenesis protein ResB, at 6,248,914 to 6,251,139 _RS28100 QEN71_RS28105: QEN71_RS28105 - c-type cytochrome, at 6,251,266 to 6,251,919 _RS28105 QEN71_RS28110: QEN71_RS28110 - ribosome biogenesis GTP-binding protein YihA/YsxC, at 6,252,199 to 6,252,864 _RS28110 Position (kb) 6251 6252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6250.500 kb on + strand, within QEN71_RS28100at 6251.257 kb on + strandat 6251.258 kb on - strandat 6251.258 kb on - strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.267 kb on + strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.268 kb on - strandat 6251.286 kb on - strandat 6251.402 kb on + strand, within QEN71_RS28105at 6251.402 kb on + strand, within QEN71_RS28105at 6251.432 kb on + strand, within QEN71_RS28105at 6251.513 kb on + strand, within QEN71_RS28105at 6251.513 kb on + strand, within QEN71_RS28105at 6251.585 kb on + strand, within QEN71_RS28105at 6251.788 kb on + strand, within QEN71_RS28105at 6251.949 kb on + strandat 6251.949 kb on + strandat 6251.950 kb on - strandat 6251.950 kb on - strandat 6251.950 kb on - strandat 6251.950 kb on - strandat 6251.965 kb on + strandat 6251.965 kb on + strandat 6251.965 kb on + strandat 6251.966 kb on - strandat 6251.966 kb on - strandat 6252.022 kb on - strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.031 kb on + strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.032 kb on - strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.036 kb on + strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.037 kb on - strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.041 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.862 kb on + strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.863 kb on - strandat 6252.873 kb on + strandat 6252.873 kb on + strandat 6252.873 kb on + strandat 6252.874 kb on - strandat 6252.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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6,250,500 + QEN71_RS28100 0.71 -0.1
6,251,257 + -2.0
6,251,258 - -0.1
6,251,258 - +0.7
6,251,267 + -1.4
6,251,267 + -0.7
6,251,267 + -2.3
6,251,267 + -2.2
6,251,267 + -2.4
6,251,267 + -2.4
6,251,267 + -2.0
6,251,268 - +0.5
6,251,268 - -1.4
6,251,268 - -1.3
6,251,268 - +0.3
6,251,268 - -0.2
6,251,268 - +0.2
6,251,268 - -0.3
6,251,268 - -0.6
6,251,268 - +0.9
6,251,268 - +0.2
6,251,268 - +1.2
6,251,286 - -0.4
6,251,402 + QEN71_RS28105 0.21 -0.1
6,251,402 + QEN71_RS28105 0.21 -0.1
6,251,432 + QEN71_RS28105 0.25 -0.1
6,251,513 + QEN71_RS28105 0.38 -2.4
6,251,513 + QEN71_RS28105 0.38 -0.4
6,251,585 + QEN71_RS28105 0.49 -1.3
6,251,788 + QEN71_RS28105 0.80 -0.4
6,251,949 + -2.0
6,251,949 + -1.7
6,251,950 - +0.2
6,251,950 - -0.2
6,251,950 - -0.7
6,251,950 - -0.6
6,251,965 + -3.8
6,251,965 + -0.7
6,251,965 + -3.6
6,251,966 - +0.3
6,251,966 - -0.2
6,252,022 - -0.9
6,252,031 + -2.7
6,252,031 + -0.7
6,252,031 + -1.6
6,252,031 + -2.7
6,252,031 + -3.6
6,252,031 + -0.9
6,252,031 + -1.3
6,252,031 + -0.1
6,252,031 + -0.9
6,252,031 + -1.3
6,252,031 + -2.3
6,252,031 + -2.3
6,252,031 + -1.8
6,252,032 - +0.8
6,252,032 - +0.5
6,252,032 - +0.7
6,252,032 - -1.1
6,252,032 - +0.1
6,252,032 - +0.4
6,252,032 - +0.1
6,252,032 - +0.3
6,252,036 + +0.7
6,252,036 + +0.5
6,252,036 + -0.0
6,252,036 + +0.1
6,252,036 + +0.4
6,252,037 - +0.4
6,252,037 - +0.4
6,252,037 - -0.2
6,252,037 - -0.1
6,252,037 - -0.3
6,252,037 - -1.5
6,252,037 - -0.2
6,252,041 + +1.3
6,252,041 + -2.4
6,252,041 + +0.7
6,252,041 + -0.7
6,252,041 + +0.2
6,252,041 + +0.2
6,252,862 + +0.0
6,252,862 + -0.1
6,252,862 + -1.8
6,252,862 + -0.5
6,252,863 - +0.2
6,252,863 - -0.8
6,252,863 - -0.2
6,252,863 - -1.0
6,252,873 + -1.2
6,252,873 + +0.3
6,252,873 + -0.1
6,252,874 - +0.8
6,252,874 - +0.0

Or see this region's nucleotide sequence