Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27140

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27135 and QEN71_RS27140 are separated by 140 nucleotidesQEN71_RS27140 and QEN71_RS27145 overlap by 4 nucleotides QEN71_RS27135: QEN71_RS27135 - RNB domain-containing ribonuclease, at 6,050,958 to 6,053,048 _RS27135 QEN71_RS27140: QEN71_RS27140 - YqiA/YcfP family alpha/beta fold hydrolase, at 6,053,189 to 6,053,791 _RS27140 QEN71_RS27145: QEN71_RS27145 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 6,053,788 to 6,055,197 _RS27145 Position (kb) 6053 6054Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6053.054 kb on - strandat 6053.259 kb on + strand, within QEN71_RS27140at 6053.259 kb on + strand, within QEN71_RS27140at 6053.259 kb on + strand, within QEN71_RS27140at 6053.259 kb on + strand, within QEN71_RS27140at 6053.259 kb on + strand, within QEN71_RS27140at 6053.259 kb on + strand, within QEN71_RS27140at 6053.260 kb on - strand, within QEN71_RS27140at 6053.260 kb on - strand, within QEN71_RS27140at 6053.260 kb on - strand, within QEN71_RS27140at 6053.260 kb on - strand, within QEN71_RS27140at 6053.260 kb on - strand, within QEN71_RS27140at 6053.260 kb on - strand, within QEN71_RS27140at 6053.260 kb on - strand, within QEN71_RS27140at 6053.322 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.379 kb on + strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.380 kb on - strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.382 kb on + strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.383 kb on - strand, within QEN71_RS27140at 6053.414 kb on + strand, within QEN71_RS27140at 6053.415 kb on - strand, within QEN71_RS27140at 6053.493 kb on + strand, within QEN71_RS27140at 6053.493 kb on + strand, within QEN71_RS27140at 6053.493 kb on + strand, within QEN71_RS27140at 6053.493 kb on + strand, within QEN71_RS27140at 6053.493 kb on + strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.494 kb on - strand, within QEN71_RS27140at 6053.580 kb on + strand, within QEN71_RS27140at 6053.580 kb on + strand, within QEN71_RS27140at 6053.781 kb on + strandat 6053.781 kb on + strandat 6053.781 kb on + strandat 6053.782 kb on - strandat 6053.782 kb on - strandat 6053.782 kb on - strandat 6053.782 kb on - strandat 6053.782 kb on - strandat 6053.782 kb on - strandat 6053.782 kb on - strandat 6053.931 kb on + strand, within QEN71_RS27145at 6053.931 kb on + strand, within QEN71_RS27145at 6053.932 kb on - strand, within QEN71_RS27145at 6054.133 kb on - strand, within QEN71_RS27145at 6054.139 kb on - strand, within QEN71_RS27145at 6054.139 kb on - strand, within QEN71_RS27145at 6054.209 kb on + strand, within QEN71_RS27145at 6054.209 kb on + strand, within QEN71_RS27145at 6054.209 kb on + strand, within QEN71_RS27145at 6054.210 kb on - strand, within QEN71_RS27145at 6054.210 kb on - strand, within QEN71_RS27145at 6054.210 kb on - strand, within QEN71_RS27145at 6054.210 kb on - strand, within QEN71_RS27145at 6054.309 kb on + strand, within QEN71_RS27145at 6054.309 kb on + strand, within QEN71_RS27145at 6054.310 kb on - strand, within QEN71_RS27145at 6054.404 kb on + strand, within QEN71_RS27145at 6054.404 kb on + strand, within QEN71_RS27145at 6054.404 kb on + strand, within QEN71_RS27145at 6054.404 kb on + strand, within QEN71_RS27145at 6054.405 kb on - strand, within QEN71_RS27145at 6054.405 kb on - strand, within QEN71_RS27145at 6054.405 kb on - strand, within QEN71_RS27145at 6054.570 kb on + strand, within QEN71_RS27145at 6054.671 kb on + strand, within QEN71_RS27145at 6054.713 kb on + strand, within QEN71_RS27145at 6054.714 kb on - strand, within QEN71_RS27145at 6054.714 kb on - strand, within QEN71_RS27145

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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6,053,054 - -0.3
6,053,259 + QEN71_RS27140 0.12 -1.5
6,053,259 + QEN71_RS27140 0.12 +0.1
6,053,259 + QEN71_RS27140 0.12 -1.0
6,053,259 + QEN71_RS27140 0.12 -0.3
6,053,259 + QEN71_RS27140 0.12 -0.8
6,053,259 + QEN71_RS27140 0.12 -0.3
6,053,260 - QEN71_RS27140 0.12 +0.8
6,053,260 - QEN71_RS27140 0.12 +0.8
6,053,260 - QEN71_RS27140 0.12 -0.5
6,053,260 - QEN71_RS27140 0.12 -2.8
6,053,260 - QEN71_RS27140 0.12 +1.2
6,053,260 - QEN71_RS27140 0.12 +0.9
6,053,260 - QEN71_RS27140 0.12 -0.1
6,053,322 + QEN71_RS27140 0.22 -2.3
6,053,379 + QEN71_RS27140 0.32 -3.0
6,053,379 + QEN71_RS27140 0.32 +0.7
6,053,379 + QEN71_RS27140 0.32 -0.1
6,053,379 + QEN71_RS27140 0.32 -1.1
6,053,379 + QEN71_RS27140 0.32 -1.3
6,053,379 + QEN71_RS27140 0.32 -1.6
6,053,379 + QEN71_RS27140 0.32 +0.2
6,053,379 + QEN71_RS27140 0.32 -0.9
6,053,379 + QEN71_RS27140 0.32 -2.6
6,053,379 + QEN71_RS27140 0.32 -0.2
6,053,379 + QEN71_RS27140 0.32 -0.8
6,053,380 - QEN71_RS27140 0.32 +0.6
6,053,380 - QEN71_RS27140 0.32 +1.4
6,053,380 - QEN71_RS27140 0.32 +0.3
6,053,380 - QEN71_RS27140 0.32 -1.1
6,053,380 - QEN71_RS27140 0.32 -0.5
6,053,380 - QEN71_RS27140 0.32 -0.3
6,053,380 - QEN71_RS27140 0.32 +0.5
6,053,380 - QEN71_RS27140 0.32 +1.2
6,053,380 - QEN71_RS27140 0.32 -0.9
6,053,380 - QEN71_RS27140 0.32 -1.5
6,053,380 - QEN71_RS27140 0.32 +0.7
6,053,380 - QEN71_RS27140 0.32 +0.2
6,053,380 - QEN71_RS27140 0.32 +0.2
6,053,382 + QEN71_RS27140 0.32 -0.7
6,053,382 + QEN71_RS27140 0.32 +0.1
6,053,382 + QEN71_RS27140 0.32 -0.1
6,053,382 + QEN71_RS27140 0.32 -1.0
6,053,382 + QEN71_RS27140 0.32 +0.2
6,053,382 + QEN71_RS27140 0.32 -0.5
6,053,382 + QEN71_RS27140 0.32 -0.6
6,053,382 + QEN71_RS27140 0.32 -0.9
6,053,382 + QEN71_RS27140 0.32 -0.2
6,053,382 + QEN71_RS27140 0.32 -1.5
6,053,382 + QEN71_RS27140 0.32 -0.2
6,053,383 - QEN71_RS27140 0.32 -2.1
6,053,383 - QEN71_RS27140 0.32 -1.0
6,053,383 - QEN71_RS27140 0.32 +0.0
6,053,383 - QEN71_RS27140 0.32 -0.3
6,053,383 - QEN71_RS27140 0.32 -2.0
6,053,383 - QEN71_RS27140 0.32 +0.4
6,053,383 - QEN71_RS27140 0.32 -0.4
6,053,383 - QEN71_RS27140 0.32 +0.2
6,053,414 + QEN71_RS27140 0.37 -1.0
6,053,415 - QEN71_RS27140 0.37 -2.9
6,053,493 + QEN71_RS27140 0.50 -0.3
6,053,493 + QEN71_RS27140 0.50 -1.7
6,053,493 + QEN71_RS27140 0.50 -1.6
6,053,493 + QEN71_RS27140 0.50 -1.6
6,053,493 + QEN71_RS27140 0.50 -0.3
6,053,494 - QEN71_RS27140 0.51 +0.1
6,053,494 - QEN71_RS27140 0.51 +1.8
6,053,494 - QEN71_RS27140 0.51 -0.5
6,053,494 - QEN71_RS27140 0.51 +0.5
6,053,494 - QEN71_RS27140 0.51 -0.8
6,053,494 - QEN71_RS27140 0.51 +2.5
6,053,494 - QEN71_RS27140 0.51 -0.9
6,053,494 - QEN71_RS27140 0.51 +0.9
6,053,494 - QEN71_RS27140 0.51 -0.0
6,053,580 + QEN71_RS27140 0.65 +0.2
6,053,580 + QEN71_RS27140 0.65 -1.2
6,053,781 + +0.3
6,053,781 + +1.3
6,053,781 + -1.3
6,053,782 - +0.5
6,053,782 - +1.1
6,053,782 - +0.7
6,053,782 - -0.0
6,053,782 - -0.7
6,053,782 - +0.4
6,053,782 - -0.2
6,053,931 + QEN71_RS27145 0.10 -0.7
6,053,931 + QEN71_RS27145 0.10 -0.7
6,053,932 - QEN71_RS27145 0.10 +1.1
6,054,133 - QEN71_RS27145 0.24 -1.5
6,054,139 - QEN71_RS27145 0.25 -0.2
6,054,139 - QEN71_RS27145 0.25 +0.1
6,054,209 + QEN71_RS27145 0.30 +0.1
6,054,209 + QEN71_RS27145 0.30 -0.1
6,054,209 + QEN71_RS27145 0.30 +1.3
6,054,210 - QEN71_RS27145 0.30 +0.6
6,054,210 - QEN71_RS27145 0.30 -1.1
6,054,210 - QEN71_RS27145 0.30 -0.6
6,054,210 - QEN71_RS27145 0.30 +0.3
6,054,309 + QEN71_RS27145 0.37 -2.6
6,054,309 + QEN71_RS27145 0.37 +1.8
6,054,310 - QEN71_RS27145 0.37 -0.0
6,054,404 + QEN71_RS27145 0.44 -0.4
6,054,404 + QEN71_RS27145 0.44 -1.9
6,054,404 + QEN71_RS27145 0.44 -1.3
6,054,404 + QEN71_RS27145 0.44 -1.8
6,054,405 - QEN71_RS27145 0.44 +0.2
6,054,405 - QEN71_RS27145 0.44 -1.0
6,054,405 - QEN71_RS27145 0.44 -0.9
6,054,570 + QEN71_RS27145 0.55 -1.3
6,054,671 + QEN71_RS27145 0.63 -1.0
6,054,713 + QEN71_RS27145 0.66 -1.0
6,054,714 - QEN71_RS27145 0.66 -1.2
6,054,714 - QEN71_RS27145 0.66 -0.7

Or see this region's nucleotide sequence