Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS24090

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS24085 and QEN71_RS24090 are separated by 25 nucleotidesQEN71_RS24090 and QEN71_RS24095 are separated by 22 nucleotides QEN71_RS24085: QEN71_RS24085 - NADH-quinone oxidoreductase subunit NuoN, at 5,359,271 to 5,360,749 _RS24085 QEN71_RS24090: QEN71_RS24090 - NADH-quinone oxidoreductase subunit M, at 5,360,775 to 5,362,268 _RS24090 QEN71_RS24095: QEN71_RS24095 - NADH-quinone oxidoreductase subunit L, at 5,362,291 to 5,364,360 _RS24095 Position (kb) 5360 5361 5362 5363Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5360.757 kb on - strandat 5360.777 kb on - strandat 5360.777 kb on - strandat 5360.777 kb on - strandat 5360.777 kb on - strandat 5360.842 kb on - strandat 5360.842 kb on - strandat 5360.842 kb on - strandat 5360.842 kb on - strandat 5360.842 kb on - strandat 5360.842 kb on - strandat 5360.864 kb on - strandat 5360.876 kb on - strandat 5360.876 kb on - strandat 5360.876 kb on - strandat 5360.876 kb on - strandat 5360.876 kb on - strandat 5360.876 kb on - strandat 5360.876 kb on - strandat 5360.972 kb on - strand, within QEN71_RS24090at 5360.984 kb on - strand, within QEN71_RS24090at 5360.984 kb on - strand, within QEN71_RS24090at 5360.984 kb on - strand, within QEN71_RS24090at 5360.984 kb on - strand, within QEN71_RS24090at 5360.984 kb on - strand, within QEN71_RS24090at 5360.997 kb on - strand, within QEN71_RS24090at 5360.997 kb on - strand, within QEN71_RS24090at 5360.997 kb on - strand, within QEN71_RS24090at 5360.997 kb on - strand, within QEN71_RS24090at 5360.997 kb on - strand, within QEN71_RS24090at 5361.053 kb on - strand, within QEN71_RS24090at 5361.053 kb on - strand, within QEN71_RS24090at 5361.215 kb on - strand, within QEN71_RS24090at 5361.215 kb on - strand, within QEN71_RS24090at 5361.215 kb on - strand, within QEN71_RS24090at 5361.215 kb on - strand, within QEN71_RS24090at 5361.353 kb on - strand, within QEN71_RS24090at 5361.353 kb on - strand, within QEN71_RS24090at 5361.404 kb on - strand, within QEN71_RS24090at 5361.497 kb on - strand, within QEN71_RS24090at 5361.628 kb on - strand, within QEN71_RS24090at 5361.628 kb on - strand, within QEN71_RS24090at 5361.630 kb on - strand, within QEN71_RS24090at 5361.630 kb on - strand, within QEN71_RS24090at 5361.713 kb on - strand, within QEN71_RS24090at 5361.713 kb on - strand, within QEN71_RS24090at 5361.713 kb on - strand, within QEN71_RS24090at 5361.713 kb on - strand, within QEN71_RS24090at 5361.713 kb on - strand, within QEN71_RS24090at 5361.713 kb on - strand, within QEN71_RS24090at 5361.755 kb on - strand, within QEN71_RS24090at 5361.755 kb on - strand, within QEN71_RS24090at 5361.755 kb on - strand, within QEN71_RS24090at 5361.818 kb on - strand, within QEN71_RS24090at 5361.818 kb on - strand, within QEN71_RS24090at 5361.818 kb on - strand, within QEN71_RS24090at 5361.818 kb on - strand, within QEN71_RS24090at 5361.818 kb on - strand, within QEN71_RS24090at 5361.818 kb on - strand, within QEN71_RS24090at 5361.818 kb on - strand, within QEN71_RS24090at 5361.851 kb on - strand, within QEN71_RS24090at 5361.851 kb on - strand, within QEN71_RS24090at 5361.851 kb on - strand, within QEN71_RS24090at 5361.851 kb on - strand, within QEN71_RS24090at 5361.851 kb on - strand, within QEN71_RS24090at 5361.851 kb on - strand, within QEN71_RS24090at 5361.851 kb on - strand, within QEN71_RS24090at 5361.923 kb on - strand, within QEN71_RS24090at 5361.923 kb on - strand, within QEN71_RS24090at 5362.034 kb on - strand, within QEN71_RS24090at 5362.034 kb on - strand, within QEN71_RS24090at 5362.034 kb on - strand, within QEN71_RS24090at 5362.034 kb on - strand, within QEN71_RS24090at 5362.034 kb on - strand, within QEN71_RS24090at 5362.034 kb on - strand, within QEN71_RS24090at 5362.092 kb on - strand, within QEN71_RS24090at 5362.242 kb on - strandat 5362.293 kb on - strandat 5362.293 kb on - strandat 5362.293 kb on - strandat 5362.293 kb on - strandat 5362.310 kb on - strandat 5362.310 kb on - strandat 5362.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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5,360,757 - -0.6
5,360,777 - -1.0
5,360,777 - -0.1
5,360,777 - +0.2
5,360,777 - +0.0
5,360,842 - -1.3
5,360,842 - -4.2
5,360,842 - -2.0
5,360,842 - -1.5
5,360,842 - -3.1
5,360,842 - -1.1
5,360,864 - -3.0
5,360,876 - -2.8
5,360,876 - -2.7
5,360,876 - -2.4
5,360,876 - -1.4
5,360,876 - -1.0
5,360,876 - -1.7
5,360,876 - -3.0
5,360,972 - QEN71_RS24090 0.13 -3.0
5,360,984 - QEN71_RS24090 0.14 -2.2
5,360,984 - QEN71_RS24090 0.14 -1.0
5,360,984 - QEN71_RS24090 0.14 -1.2
5,360,984 - QEN71_RS24090 0.14 -2.3
5,360,984 - QEN71_RS24090 0.14 -3.8
5,360,997 - QEN71_RS24090 0.15 -1.4
5,360,997 - QEN71_RS24090 0.15 -1.7
5,360,997 - QEN71_RS24090 0.15 -1.8
5,360,997 - QEN71_RS24090 0.15 -3.2
5,360,997 - QEN71_RS24090 0.15 -2.2
5,361,053 - QEN71_RS24090 0.19 -1.2
5,361,053 - QEN71_RS24090 0.19 -2.6
5,361,215 - QEN71_RS24090 0.29 -1.5
5,361,215 - QEN71_RS24090 0.29 -1.6
5,361,215 - QEN71_RS24090 0.29 -2.1
5,361,215 - QEN71_RS24090 0.29 -2.2
5,361,353 - QEN71_RS24090 0.39 -2.0
5,361,353 - QEN71_RS24090 0.39 -2.1
5,361,404 - QEN71_RS24090 0.42 -2.2
5,361,497 - QEN71_RS24090 0.48 -2.0
5,361,628 - QEN71_RS24090 0.57 +0.3
5,361,628 - QEN71_RS24090 0.57 -2.4
5,361,630 - QEN71_RS24090 0.57 -3.2
5,361,630 - QEN71_RS24090 0.57 -0.5
5,361,713 - QEN71_RS24090 0.63 -2.4
5,361,713 - QEN71_RS24090 0.63 -0.6
5,361,713 - QEN71_RS24090 0.63 -1.5
5,361,713 - QEN71_RS24090 0.63 -2.9
5,361,713 - QEN71_RS24090 0.63 -2.2
5,361,713 - QEN71_RS24090 0.63 -4.7
5,361,755 - QEN71_RS24090 0.66 -2.3
5,361,755 - QEN71_RS24090 0.66 -2.4
5,361,755 - QEN71_RS24090 0.66 -3.9
5,361,818 - QEN71_RS24090 0.70 -1.7
5,361,818 - QEN71_RS24090 0.70 -1.6
5,361,818 - QEN71_RS24090 0.70 -2.3
5,361,818 - QEN71_RS24090 0.70 -2.6
5,361,818 - QEN71_RS24090 0.70 -2.1
5,361,818 - QEN71_RS24090 0.70 -1.6
5,361,818 - QEN71_RS24090 0.70 -1.4
5,361,851 - QEN71_RS24090 0.72 -2.2
5,361,851 - QEN71_RS24090 0.72 -1.3
5,361,851 - QEN71_RS24090 0.72 -4.4
5,361,851 - QEN71_RS24090 0.72 -3.4
5,361,851 - QEN71_RS24090 0.72 -2.2
5,361,851 - QEN71_RS24090 0.72 -2.1
5,361,851 - QEN71_RS24090 0.72 -2.5
5,361,923 - QEN71_RS24090 0.77 -1.9
5,361,923 - QEN71_RS24090 0.77 -2.8
5,362,034 - QEN71_RS24090 0.84 -3.6
5,362,034 - QEN71_RS24090 0.84 -2.6
5,362,034 - QEN71_RS24090 0.84 -3.3
5,362,034 - QEN71_RS24090 0.84 -4.3
5,362,034 - QEN71_RS24090 0.84 -1.8
5,362,034 - QEN71_RS24090 0.84 -2.2
5,362,092 - QEN71_RS24090 0.88 -0.7
5,362,242 - -2.8
5,362,293 - +0.7
5,362,293 - -0.3
5,362,293 - -0.7
5,362,293 - +0.2
5,362,310 - -1.1
5,362,310 - -0.3
5,362,310 - +0.9

Or see this region's nucleotide sequence