Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09605

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09600 and QEN71_RS09605 are separated by 18 nucleotidesQEN71_RS09605 and QEN71_RS09610 are separated by 25 nucleotides QEN71_RS09600: QEN71_RS09600 - amidase family protein, at 2,144,654 to 2,146,180 _RS09600 QEN71_RS09605: QEN71_RS09605 - RidA family protein, at 2,146,199 to 2,146,552 _RS09605 QEN71_RS09610: QEN71_RS09610 - FAD-dependent oxidoreductase, at 2,146,578 to 2,147,810 _RS09610 Position (kb) 2146 2147Strain fitness (log2 ratio) -2 -1 0 1 2at 2145.386 kb on + strand, within QEN71_RS09600at 2145.386 kb on + strand, within QEN71_RS09600at 2145.386 kb on + strand, within QEN71_RS09600at 2145.386 kb on + strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.387 kb on - strand, within QEN71_RS09600at 2145.452 kb on + strand, within QEN71_RS09600at 2145.541 kb on + strand, within QEN71_RS09600at 2145.541 kb on + strand, within QEN71_RS09600at 2145.541 kb on + strand, within QEN71_RS09600at 2145.542 kb on - strand, within QEN71_RS09600at 2145.542 kb on - strand, within QEN71_RS09600at 2145.542 kb on - strand, within QEN71_RS09600at 2145.635 kb on + strand, within QEN71_RS09600at 2145.635 kb on + strand, within QEN71_RS09600at 2145.635 kb on + strand, within QEN71_RS09600at 2145.635 kb on + strand, within QEN71_RS09600at 2145.636 kb on - strand, within QEN71_RS09600at 2145.680 kb on + strand, within QEN71_RS09600at 2145.680 kb on + strand, within QEN71_RS09600at 2145.776 kb on + strand, within QEN71_RS09600at 2145.776 kb on + strand, within QEN71_RS09600at 2145.776 kb on + strand, within QEN71_RS09600at 2145.776 kb on + strand, within QEN71_RS09600at 2145.776 kb on + strand, within QEN71_RS09600at 2145.776 kb on + strand, within QEN71_RS09600at 2145.776 kb on + strand, within QEN71_RS09600at 2145.777 kb on - strand, within QEN71_RS09600at 2145.777 kb on - strand, within QEN71_RS09600at 2145.833 kb on + strand, within QEN71_RS09600at 2145.833 kb on + strand, within QEN71_RS09600at 2145.834 kb on - strand, within QEN71_RS09600at 2145.869 kb on + strand, within QEN71_RS09600at 2145.869 kb on + strand, within QEN71_RS09600at 2145.869 kb on + strand, within QEN71_RS09600at 2145.869 kb on + strand, within QEN71_RS09600at 2145.869 kb on + strand, within QEN71_RS09600at 2145.869 kb on + strand, within QEN71_RS09600at 2145.870 kb on - strand, within QEN71_RS09600at 2145.870 kb on - strand, within QEN71_RS09600at 2145.870 kb on - strand, within QEN71_RS09600at 2145.870 kb on - strand, within QEN71_RS09600at 2145.870 kb on - strand, within QEN71_RS09600at 2145.872 kb on + strand, within QEN71_RS09600at 2145.873 kb on - strand, within QEN71_RS09600at 2145.873 kb on - strand, within QEN71_RS09600at 2145.873 kb on - strand, within QEN71_RS09600at 2145.893 kb on + strand, within QEN71_RS09600at 2145.893 kb on + strand, within QEN71_RS09600at 2145.893 kb on + strand, within QEN71_RS09600at 2145.894 kb on - strand, within QEN71_RS09600at 2145.894 kb on - strand, within QEN71_RS09600at 2145.894 kb on - strand, within QEN71_RS09600at 2145.894 kb on - strand, within QEN71_RS09600at 2145.894 kb on - strand, within QEN71_RS09600at 2146.271 kb on + strand, within QEN71_RS09605at 2146.271 kb on + strand, within QEN71_RS09605at 2146.272 kb on - strand, within QEN71_RS09605at 2146.272 kb on - strand, within QEN71_RS09605at 2146.272 kb on - strand, within QEN71_RS09605at 2146.272 kb on - strand, within QEN71_RS09605at 2146.272 kb on - strand, within QEN71_RS09605at 2146.370 kb on - strand, within QEN71_RS09605at 2146.598 kb on - strandat 2146.737 kb on + strand, within QEN71_RS09610at 2146.780 kb on - strand, within QEN71_RS09610at 2146.855 kb on - strand, within QEN71_RS09610at 2146.903 kb on - strand, within QEN71_RS09610at 2146.903 kb on - strand, within QEN71_RS09610at 2147.032 kb on + strand, within QEN71_RS09610at 2147.032 kb on + strand, within QEN71_RS09610at 2147.033 kb on - strand, within QEN71_RS09610at 2147.061 kb on + strand, within QEN71_RS09610at 2147.074 kb on - strand, within QEN71_RS09610at 2147.149 kb on - strand, within QEN71_RS09610at 2147.150 kb on + strand, within QEN71_RS09610at 2147.151 kb on - strand, within QEN71_RS09610at 2147.196 kb on + strand, within QEN71_RS09610at 2147.197 kb on - strand, within QEN71_RS09610at 2147.197 kb on - strand, within QEN71_RS09610at 2147.197 kb on - strand, within QEN71_RS09610at 2147.206 kb on - strand, within QEN71_RS09610at 2147.389 kb on - strand, within QEN71_RS09610at 2147.400 kb on + strand, within QEN71_RS09610at 2147.401 kb on - strand, within QEN71_RS09610at 2147.401 kb on - strand, within QEN71_RS09610at 2147.457 kb on + strand, within QEN71_RS09610at 2147.458 kb on - strand, within QEN71_RS09610at 2147.458 kb on - strand, within QEN71_RS09610

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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2,145,386 + QEN71_RS09600 0.48 +0.6
2,145,386 + QEN71_RS09600 0.48 -0.1
2,145,386 + QEN71_RS09600 0.48 -0.2
2,145,386 + QEN71_RS09600 0.48 -0.3
2,145,387 - QEN71_RS09600 0.48 +0.1
2,145,387 - QEN71_RS09600 0.48 -0.3
2,145,387 - QEN71_RS09600 0.48 +0.8
2,145,387 - QEN71_RS09600 0.48 -0.6
2,145,452 + QEN71_RS09600 0.52 -0.1
2,145,541 + QEN71_RS09600 0.58 +0.2
2,145,541 + QEN71_RS09600 0.58 +0.3
2,145,541 + QEN71_RS09600 0.58 +1.4
2,145,542 - QEN71_RS09600 0.58 -0.1
2,145,542 - QEN71_RS09600 0.58 -2.4
2,145,542 - QEN71_RS09600 0.58 +0.0
2,145,635 + QEN71_RS09600 0.64 +0.1
2,145,635 + QEN71_RS09600 0.64 -0.2
2,145,635 + QEN71_RS09600 0.64 -0.1
2,145,635 + QEN71_RS09600 0.64 +0.6
2,145,636 - QEN71_RS09600 0.64 -1.4
2,145,680 + QEN71_RS09600 0.67 -0.9
2,145,680 + QEN71_RS09600 0.67 -0.1
2,145,776 + QEN71_RS09600 0.73 -0.9
2,145,776 + QEN71_RS09600 0.73 -0.0
2,145,776 + QEN71_RS09600 0.73 +1.5
2,145,776 + QEN71_RS09600 0.73 +0.7
2,145,776 + QEN71_RS09600 0.73 +0.3
2,145,776 + QEN71_RS09600 0.73 -0.5
2,145,776 + QEN71_RS09600 0.73 +1.2
2,145,777 - QEN71_RS09600 0.74 +0.2
2,145,777 - QEN71_RS09600 0.74 -1.0
2,145,833 + QEN71_RS09600 0.77 +0.2
2,145,833 + QEN71_RS09600 0.77 +0.1
2,145,834 - QEN71_RS09600 0.77 -1.4
2,145,869 + QEN71_RS09600 0.80 +2.1
2,145,869 + QEN71_RS09600 0.80 -1.3
2,145,869 + QEN71_RS09600 0.80 +1.3
2,145,869 + QEN71_RS09600 0.80 -0.7
2,145,869 + QEN71_RS09600 0.80 -0.3
2,145,869 + QEN71_RS09600 0.80 +1.6
2,145,870 - QEN71_RS09600 0.80 -0.2
2,145,870 - QEN71_RS09600 0.80 -1.1
2,145,870 - QEN71_RS09600 0.80 +0.0
2,145,870 - QEN71_RS09600 0.80 -0.7
2,145,870 - QEN71_RS09600 0.80 +0.8
2,145,872 + QEN71_RS09600 0.80 -0.2
2,145,873 - QEN71_RS09600 0.80 -1.0
2,145,873 - QEN71_RS09600 0.80 +0.1
2,145,873 - QEN71_RS09600 0.80 +1.3
2,145,893 + QEN71_RS09600 0.81 -0.1
2,145,893 + QEN71_RS09600 0.81 +0.3
2,145,893 + QEN71_RS09600 0.81 -0.6
2,145,894 - QEN71_RS09600 0.81 -0.3
2,145,894 - QEN71_RS09600 0.81 +1.6
2,145,894 - QEN71_RS09600 0.81 -1.2
2,145,894 - QEN71_RS09600 0.81 -0.6
2,145,894 - QEN71_RS09600 0.81 +1.3
2,146,271 + QEN71_RS09605 0.20 -0.5
2,146,271 + QEN71_RS09605 0.20 -0.3
2,146,272 - QEN71_RS09605 0.21 +0.0
2,146,272 - QEN71_RS09605 0.21 +0.4
2,146,272 - QEN71_RS09605 0.21 -0.3
2,146,272 - QEN71_RS09605 0.21 +0.2
2,146,272 - QEN71_RS09605 0.21 -1.1
2,146,370 - QEN71_RS09605 0.48 -1.2
2,146,598 - +0.1
2,146,737 + QEN71_RS09610 0.13 -0.0
2,146,780 - QEN71_RS09610 0.16 +0.4
2,146,855 - QEN71_RS09610 0.22 -0.2
2,146,903 - QEN71_RS09610 0.26 +0.3
2,146,903 - QEN71_RS09610 0.26 -0.7
2,147,032 + QEN71_RS09610 0.37 -0.8
2,147,032 + QEN71_RS09610 0.37 -0.2
2,147,033 - QEN71_RS09610 0.37 -1.9
2,147,061 + QEN71_RS09610 0.39 -0.3
2,147,074 - QEN71_RS09610 0.40 -0.2
2,147,149 - QEN71_RS09610 0.46 +0.1
2,147,150 + QEN71_RS09610 0.46 -1.4
2,147,151 - QEN71_RS09610 0.46 -0.6
2,147,196 + QEN71_RS09610 0.50 -0.6
2,147,197 - QEN71_RS09610 0.50 +0.8
2,147,197 - QEN71_RS09610 0.50 +0.7
2,147,197 - QEN71_RS09610 0.50 -1.5
2,147,206 - QEN71_RS09610 0.51 +0.0
2,147,389 - QEN71_RS09610 0.66 -0.9
2,147,400 + QEN71_RS09610 0.67 +0.2
2,147,401 - QEN71_RS09610 0.67 +1.3
2,147,401 - QEN71_RS09610 0.67 +1.6
2,147,457 + QEN71_RS09610 0.71 -1.4
2,147,458 - QEN71_RS09610 0.71 +0.1
2,147,458 - QEN71_RS09610 0.71 -0.4

Or see this region's nucleotide sequence