Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02120 and QEN71_RS02125 are separated by 14 nucleotides QEN71_RS02125 and QEN71_RS02130 are separated by 20 nucleotides
QEN71_RS02120: QEN71_RS02120 - peptidylprolyl isomerase, at 475,785 to 477,188
_RS02120
QEN71_RS02125: QEN71_RS02125 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 477,203 to 478,204
_RS02125
QEN71_RS02130: QEN71_RS02130 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 478,225 to 479,055
_RS02130
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 477.126 kb on + strand at 477.126 kb on + strand at 477.126 kb on + strand at 477.126 kb on + strand at 477.126 kb on + strand at 477.126 kb on + strand at 477.127 kb on - strand at 477.127 kb on - strand at 477.127 kb on - strand at 477.127 kb on - strand at 477.141 kb on + strand at 477.142 kb on - strand at 477.142 kb on - strand at 477.186 kb on + strand at 477.186 kb on + strand at 477.250 kb on + strand at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.485 kb on + strand, within QEN71_RS02125 at 477.486 kb on - strand, within QEN71_RS02125 at 477.486 kb on - strand, within QEN71_RS02125 at 477.486 kb on - strand, within QEN71_RS02125 at 477.486 kb on - strand, within QEN71_RS02125 at 477.486 kb on - strand, within QEN71_RS02125 at 477.486 kb on - strand, within QEN71_RS02125 at 477.614 kb on + strand, within QEN71_RS02125 at 477.614 kb on + strand, within QEN71_RS02125 at 477.615 kb on - strand, within QEN71_RS02125 at 477.615 kb on - strand, within QEN71_RS02125 at 477.857 kb on + strand, within QEN71_RS02125 at 478.031 kb on + strand, within QEN71_RS02125 at 478.032 kb on - strand, within QEN71_RS02125 at 478.032 kb on - strand, within QEN71_RS02125 at 478.214 kb on - strand at 478.214 kb on - strand at 478.588 kb on + strand, within QEN71_RS02130 at 478.588 kb on + strand, within QEN71_RS02130 at 478.588 kb on + strand, within QEN71_RS02130 at 478.589 kb on - strand, within QEN71_RS02130 at 478.589 kb on - strand, within QEN71_RS02130 at 478.738 kb on + strand, within QEN71_RS02130 at 478.744 kb on + strand, within QEN71_RS02130 at 478.744 kb on + strand, within QEN71_RS02130 at 478.744 kb on + strand, within QEN71_RS02130 at 478.745 kb on - strand, within QEN71_RS02130 at 478.745 kb on - strand, within QEN71_RS02130 at 478.745 kb on - strand, within QEN71_RS02130 at 478.745 kb on - strand, within QEN71_RS02130 at 478.936 kb on + strand, within QEN71_RS02130 at 479.011 kb on + strand at 479.012 kb on - strand at 479.012 kb on - strand at 479.012 kb on - strand at 479.012 kb on - strand at 479.074 kb on + strand at 479.074 kb on + strand at 479.074 kb on + strand at 479.074 kb on + strand at 479.075 kb on - strand at 479.075 kb on - strand at 479.075 kb on - strand at 479.075 kb on - strand at 479.075 kb on - strand at 479.112 kb on + strand at 479.112 kb on + strand at 479.112 kb on + strand at 479.113 kb on - strand at 479.113 kb on - strand at 479.113 kb on - strand at 479.113 kb on - strand at 479.142 kb on + strand at 479.142 kb on + strand at 479.142 kb on + strand at 479.142 kb on + strand at 479.142 kb on + strand at 479.143 kb on - strand at 479.143 kb on - strand at 479.143 kb on - strand at 479.160 kb on + strand at 479.160 kb on + strand at 479.161 kb on - strand at 479.161 kb on - strand at 479.161 kb on - strand at 479.167 kb on + strand at 479.167 kb on + strand at 479.167 kb on + strand at 479.167 kb on + strand at 479.167 kb on + strand at 479.167 kb on + strand at 479.167 kb on + strand at 479.168 kb on - strand at 479.168 kb on - strand at 479.168 kb on - strand at 479.168 kb on - strand at 479.168 kb on - strand at 479.168 kb on - strand at 479.168 kb on - strand at 479.173 kb on + strand at 479.173 kb on + strand at 479.173 kb on + strand at 479.174 kb on - strand at 479.174 kb on - strand at 479.174 kb on - strand at 479.174 kb on - strand at 479.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 477,126 + -0.5 477,126 + -2.0 477,126 + -0.8 477,126 + -0.6 477,126 + -0.3 477,126 + -0.9 477,127 - -0.3 477,127 - -1.0 477,127 - -0.3 477,127 - +0.5 477,141 + -2.2 477,142 - -3.5 477,142 - -1.2 477,186 + +0.1 477,186 + +1.1 477,250 + -0.2 477,485 + QEN71_RS02125 0.28 -1.9 477,485 + QEN71_RS02125 0.28 -0.2 477,485 + QEN71_RS02125 0.28 +0.9 477,485 + QEN71_RS02125 0.28 -1.6 477,485 + QEN71_RS02125 0.28 -0.7 477,485 + QEN71_RS02125 0.28 -1.3 477,485 + QEN71_RS02125 0.28 -0.4 477,485 + QEN71_RS02125 0.28 -0.7 477,485 + QEN71_RS02125 0.28 +0.1 477,485 + QEN71_RS02125 0.28 -1.1 477,485 + QEN71_RS02125 0.28 +0.7 477,486 - QEN71_RS02125 0.28 +2.9 477,486 - QEN71_RS02125 0.28 +0.5 477,486 - QEN71_RS02125 0.28 -0.5 477,486 - QEN71_RS02125 0.28 -0.1 477,486 - QEN71_RS02125 0.28 -0.6 477,486 - QEN71_RS02125 0.28 -2.3 477,614 + QEN71_RS02125 0.41 +1.0 477,614 + QEN71_RS02125 0.41 -0.6 477,615 - QEN71_RS02125 0.41 -1.9 477,615 - QEN71_RS02125 0.41 +0.2 477,857 + QEN71_RS02125 0.65 -0.9 478,031 + QEN71_RS02125 0.83 -1.0 478,032 - QEN71_RS02125 0.83 -0.4 478,032 - QEN71_RS02125 0.83 -1.9 478,214 - +0.4 478,214 - +1.2 478,588 + QEN71_RS02130 0.44 +1.4 478,588 + QEN71_RS02130 0.44 +0.5 478,588 + QEN71_RS02130 0.44 +0.1 478,589 - QEN71_RS02130 0.44 +1.4 478,589 - QEN71_RS02130 0.44 -0.1 478,738 + QEN71_RS02130 0.62 +1.0 478,744 + QEN71_RS02130 0.62 -1.0 478,744 + QEN71_RS02130 0.62 +1.1 478,744 + QEN71_RS02130 0.62 -0.8 478,745 - QEN71_RS02130 0.63 +1.2 478,745 - QEN71_RS02130 0.63 -0.5 478,745 - QEN71_RS02130 0.63 -0.5 478,745 - QEN71_RS02130 0.63 -0.2 478,936 + QEN71_RS02130 0.86 +0.2 479,011 + -1.3 479,012 - -1.4 479,012 - +1.5 479,012 - -0.2 479,012 - +0.6 479,074 + +0.1 479,074 + -1.0 479,074 + +0.0 479,074 + -0.4 479,075 - -1.2 479,075 - -1.5 479,075 - -0.5 479,075 - -0.2 479,075 - -0.2 479,112 + -0.4 479,112 + +0.3 479,112 + -1.1 479,113 - -0.1 479,113 - -2.9 479,113 - -0.9 479,113 - +0.2 479,142 + -1.0 479,142 + -3.2 479,142 + -0.2 479,142 + +0.3 479,142 + -0.3 479,143 - -0.3 479,143 - -0.1 479,143 - +0.8 479,160 + +1.6 479,160 + -0.8 479,161 - +1.4 479,161 - +0.9 479,161 - +0.4 479,167 + -1.2 479,167 + +0.2 479,167 + +0.4 479,167 + +0.3 479,167 + -1.4 479,167 + -0.2 479,167 + +0.7 479,168 - +0.8 479,168 - -2.1 479,168 - +0.7 479,168 - -0.4 479,168 - -0.4 479,168 - +0.5 479,168 - +0.1 479,173 + +0.4 479,173 + +0.1 479,173 + +0.1 479,174 - -0.2 479,174 - -0.5 479,174 - +0.1 479,174 - +0.4 479,174 - -0.9
Or see this region's nucleotide sequence