Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38255

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38245 and QEN71_RS38250 are separated by 343 nucleotidesQEN71_RS38250 and QEN71_RS38255 are separated by 16 nucleotidesQEN71_RS38255 and QEN71_RS38260 are separated by 301 nucleotides QEN71_RS38245: QEN71_RS38245 - 2-oxoglutarate dehydrogenase E1 component, at 1,963,958 to 1,966,783 _RS38245 QEN71_RS38250: QEN71_RS38250 - helix-turn-helix transcriptional regulator, at 1,967,127 to 1,967,447 _RS38250 QEN71_RS38255: QEN71_RS38255 - biosynthetic-type acetolactate synthase large subunit, at 1,967,464 to 1,969,329 _RS38255 QEN71_RS38260: QEN71_RS38260 - GlxA family transcriptional regulator, at 1,969,631 to 1,970,629 _RS38260 Position (kb) 1967 1968 1969 1970Strain fitness (log2 ratio) -2 -1 0 1 2at 1966.665 kb on + strandat 1966.716 kb on + strandat 1966.717 kb on - strandat 1966.732 kb on - strandat 1966.771 kb on + strandat 1966.884 kb on - strandat 1966.884 kb on - strandat 1966.924 kb on + strandat 1966.925 kb on - strandat 1966.925 kb on - strandat 1966.925 kb on - strandat 1966.925 kb on - strandat 1966.925 kb on - strandat 1966.925 kb on - strandat 1966.955 kb on + strandat 1967.023 kb on - strandat 1967.029 kb on + strandat 1967.391 kb on + strand, within QEN71_RS38250at 1967.391 kb on + strand, within QEN71_RS38250at 1967.561 kb on + strandat 1967.783 kb on + strand, within QEN71_RS38255at 1967.856 kb on - strand, within QEN71_RS38255at 1967.856 kb on - strand, within QEN71_RS38255at 1968.265 kb on + strand, within QEN71_RS38255at 1968.531 kb on + strand, within QEN71_RS38255at 1968.531 kb on + strand, within QEN71_RS38255at 1968.600 kb on - strand, within QEN71_RS38255at 1968.600 kb on - strand, within QEN71_RS38255at 1968.702 kb on - strand, within QEN71_RS38255at 1968.734 kb on + strand, within QEN71_RS38255at 1968.820 kb on - strand, within QEN71_RS38255at 1969.386 kb on + strandat 1969.387 kb on - strandat 1969.387 kb on - strandat 1969.393 kb on - strandat 1969.455 kb on + strandat 1969.609 kb on + strandat 1969.609 kb on + strandat 1969.610 kb on - strandat 1969.650 kb on + strandat 1969.650 kb on + strandat 1969.757 kb on + strand, within QEN71_RS38260at 1970.201 kb on + strand, within QEN71_RS38260at 1970.202 kb on - strand, within QEN71_RS38260at 1970.202 kb on - strand, within QEN71_RS38260at 1970.202 kb on - strand, within QEN71_RS38260at 1970.241 kb on - strand, within QEN71_RS38260

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,966,665 + +0.1
1,966,716 + -1.0
1,966,717 - +2.4
1,966,732 - -0.8
1,966,771 + -0.0
1,966,884 - -1.8
1,966,884 - -0.1
1,966,924 + -1.0
1,966,925 - +0.3
1,966,925 - -1.0
1,966,925 - +1.4
1,966,925 - -0.5
1,966,925 - +0.1
1,966,925 - -0.7
1,966,955 + -1.3
1,967,023 - -2.4
1,967,029 + -1.1
1,967,391 + QEN71_RS38250 0.82 -0.8
1,967,391 + QEN71_RS38250 0.82 +0.3
1,967,561 + +1.2
1,967,783 + QEN71_RS38255 0.17 -0.7
1,967,856 - QEN71_RS38255 0.21 +0.0
1,967,856 - QEN71_RS38255 0.21 +1.5
1,968,265 + QEN71_RS38255 0.43 +1.7
1,968,531 + QEN71_RS38255 0.57 +0.7
1,968,531 + QEN71_RS38255 0.57 -0.5
1,968,600 - QEN71_RS38255 0.61 -0.6
1,968,600 - QEN71_RS38255 0.61 -0.3
1,968,702 - QEN71_RS38255 0.66 -1.0
1,968,734 + QEN71_RS38255 0.68 +2.2
1,968,820 - QEN71_RS38255 0.73 +0.0
1,969,386 + -0.3
1,969,387 - +0.7
1,969,387 - +0.1
1,969,393 - -0.3
1,969,455 + -0.0
1,969,609 + -1.5
1,969,609 + +0.5
1,969,610 - -0.1
1,969,650 + -0.6
1,969,650 + -1.0
1,969,757 + QEN71_RS38260 0.13 +0.3
1,970,201 + QEN71_RS38260 0.57 -0.6
1,970,202 - QEN71_RS38260 0.57 -0.0
1,970,202 - QEN71_RS38260 0.57 -0.9
1,970,202 - QEN71_RS38260 0.57 -0.5
1,970,241 - QEN71_RS38260 0.61 -0.6

Or see this region's nucleotide sequence