Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37645

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37630 and QEN71_RS37635 overlap by 4 nucleotidesQEN71_RS37635 and QEN71_RS37640 overlap by 43 nucleotidesQEN71_RS37640 and QEN71_RS37645 are separated by 108 nucleotidesQEN71_RS37645 and QEN71_RS37650 are separated by 75 nucleotidesQEN71_RS37650 and QEN71_RS37655 are separated by 235 nucleotides QEN71_RS37630: QEN71_RS37630 - DUF692 domain-containing protein, at 1,811,127 to 1,812,005 _RS37630 QEN71_RS37635: QEN71_RS37635 - DNA-binding domain-containing protein, at 1,812,002 to 1,812,754 _RS37635 QEN71_RS37640: QEN71_RS37640 - tautomerase family protein, at 1,812,712 to 1,812,861 _RS37640 QEN71_RS37645: QEN71_RS37645 - organic hydroperoxide resistance protein, at 1,812,970 to 1,813,395 _RS37645 QEN71_RS37650: QEN71_RS37650 - hypothetical protein, at 1,813,471 to 1,813,668 _RS37650 QEN71_RS37655: QEN71_RS37655 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 1,813,904 to 1,815,415 _RS37655 Position (kb) 1812 1813 1814Strain fitness (log2 ratio) -2 -1 0 1at 1812.035 kb on - strandat 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.120 kb on - strand, within QEN71_RS37635at 1812.309 kb on + strand, within QEN71_RS37635at 1812.310 kb on - strand, within QEN71_RS37635at 1812.642 kb on + strand, within QEN71_RS37635at 1812.731 kb on - strandat 1812.731 kb on - strandat 1812.731 kb on - strandat 1812.945 kb on + strandat 1812.945 kb on + strandat 1812.946 kb on - strandat 1812.946 kb on - strandat 1812.946 kb on - strandat 1813.406 kb on + strandat 1813.434 kb on + strandat 1813.435 kb on - strandat 1813.446 kb on + strandat 1813.447 kb on - strandat 1813.449 kb on + strandat 1813.486 kb on - strandat 1813.684 kb on - strandat 1813.708 kb on - strandat 1813.772 kb on + strandat 1813.773 kb on - strandat 1813.877 kb on - strandat 1813.905 kb on + strandat 1813.984 kb on + strandat 1813.986 kb on + strandat 1813.987 kb on - strandat 1814.011 kb on - strandat 1814.262 kb on + strand, within QEN71_RS37655

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,812,035 - -0.1
1,812,120 - QEN71_RS37635 0.16 +0.4
1,812,120 - QEN71_RS37635 0.16 -0.5
1,812,120 - QEN71_RS37635 0.16 +0.6
1,812,120 - QEN71_RS37635 0.16 -1.2
1,812,120 - QEN71_RS37635 0.16 -0.0
1,812,120 - QEN71_RS37635 0.16 +0.2
1,812,309 + QEN71_RS37635 0.41 +0.4
1,812,310 - QEN71_RS37635 0.41 +0.1
1,812,642 + QEN71_RS37635 0.85 -0.6
1,812,731 - +0.5
1,812,731 - -0.3
1,812,731 - -0.6
1,812,945 + -2.5
1,812,945 + -0.6
1,812,946 - -0.0
1,812,946 - +0.8
1,812,946 - -1.5
1,813,406 + -0.8
1,813,434 + -0.6
1,813,435 - +0.5
1,813,446 + -1.5
1,813,447 - -0.1
1,813,449 + +0.5
1,813,486 - -0.9
1,813,684 - -0.5
1,813,708 - +0.7
1,813,772 + -0.3
1,813,773 - +0.9
1,813,877 - -0.4
1,813,905 + +0.2
1,813,984 + -0.7
1,813,986 + -0.1
1,813,987 - -0.4
1,814,011 - -1.2
1,814,262 + QEN71_RS37655 0.24 -0.5

Or see this region's nucleotide sequence