Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35905

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35900 and QEN71_RS35905 are separated by 89 nucleotidesQEN71_RS35905 and QEN71_RS35910 are separated by 389 nucleotides QEN71_RS35900: QEN71_RS35900 - MFS transporter, at 1,434,832 to 1,436,154 _RS35900 QEN71_RS35905: QEN71_RS35905 - ribokinase, at 1,436,244 to 1,437,182 _RS35905 QEN71_RS35910: QEN71_RS35910 - LacI family DNA-binding transcriptional regulator, at 1,437,572 to 1,438,651 _RS35910 Position (kb) 1436 1437 1438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1435.347 kb on + strand, within QEN71_RS35900at 1435.347 kb on + strand, within QEN71_RS35900at 1435.347 kb on + strand, within QEN71_RS35900at 1435.347 kb on + strand, within QEN71_RS35900at 1435.348 kb on - strand, within QEN71_RS35900at 1435.367 kb on + strand, within QEN71_RS35900at 1435.389 kb on - strand, within QEN71_RS35900at 1435.389 kb on - strand, within QEN71_RS35900at 1435.527 kb on - strand, within QEN71_RS35900at 1435.571 kb on + strand, within QEN71_RS35900at 1435.572 kb on - strand, within QEN71_RS35900at 1435.841 kb on - strand, within QEN71_RS35900at 1435.895 kb on - strand, within QEN71_RS35900at 1435.952 kb on + strand, within QEN71_RS35900at 1435.952 kb on + strand, within QEN71_RS35900at 1435.952 kb on + strand, within QEN71_RS35900at 1435.953 kb on - strand, within QEN71_RS35900at 1435.953 kb on - strand, within QEN71_RS35900at 1435.953 kb on - strand, within QEN71_RS35900at 1435.953 kb on - strand, within QEN71_RS35900at 1435.953 kb on - strand, within QEN71_RS35900at 1436.058 kb on - strandat 1436.058 kb on - strandat 1436.089 kb on - strandat 1436.176 kb on + strandat 1436.177 kb on - strandat 1436.211 kb on - strandat 1436.458 kb on + strand, within QEN71_RS35905at 1436.458 kb on + strand, within QEN71_RS35905at 1436.459 kb on - strand, within QEN71_RS35905at 1436.459 kb on - strand, within QEN71_RS35905at 1436.459 kb on - strand, within QEN71_RS35905at 1436.627 kb on - strand, within QEN71_RS35905at 1436.909 kb on + strand, within QEN71_RS35905at 1436.909 kb on + strand, within QEN71_RS35905at 1436.909 kb on + strand, within QEN71_RS35905at 1436.909 kb on + strand, within QEN71_RS35905at 1436.909 kb on + strand, within QEN71_RS35905at 1436.909 kb on + strand, within QEN71_RS35905at 1436.909 kb on + strand, within QEN71_RS35905at 1436.910 kb on - strand, within QEN71_RS35905at 1436.943 kb on + strand, within QEN71_RS35905at 1436.943 kb on + strand, within QEN71_RS35905at 1436.943 kb on + strand, within QEN71_RS35905at 1436.943 kb on + strand, within QEN71_RS35905at 1436.944 kb on - strand, within QEN71_RS35905at 1437.132 kb on - strandat 1437.132 kb on - strandat 1437.278 kb on + strandat 1437.310 kb on + strandat 1437.310 kb on + strandat 1437.310 kb on + strandat 1437.310 kb on + strandat 1437.310 kb on + strandat 1437.310 kb on + strandat 1437.310 kb on + strandat 1437.311 kb on - strandat 1437.311 kb on - strandat 1437.311 kb on - strandat 1437.311 kb on - strandat 1437.311 kb on - strandat 1437.311 kb on - strandat 1437.413 kb on - strandat 1437.413 kb on - strandat 1437.413 kb on - strandat 1437.503 kb on - strandat 1437.512 kb on + strandat 1437.512 kb on + strandat 1437.513 kb on - strandat 1437.513 kb on - strandat 1437.513 kb on - strandat 1437.685 kb on + strand, within QEN71_RS35910at 1437.685 kb on + strand, within QEN71_RS35910at 1437.685 kb on + strand, within QEN71_RS35910at 1437.686 kb on - strand, within QEN71_RS35910at 1437.686 kb on - strand, within QEN71_RS35910at 1437.686 kb on - strand, within QEN71_RS35910at 1437.691 kb on - strand, within QEN71_RS35910at 1437.701 kb on + strand, within QEN71_RS35910at 1437.701 kb on + strand, within QEN71_RS35910at 1437.701 kb on + strand, within QEN71_RS35910at 1437.702 kb on - strand, within QEN71_RS35910at 1437.702 kb on - strand, within QEN71_RS35910at 1437.855 kb on + strand, within QEN71_RS35910at 1437.932 kb on + strand, within QEN71_RS35910at 1437.933 kb on - strand, within QEN71_RS35910at 1438.054 kb on - strand, within QEN71_RS35910at 1438.058 kb on + strand, within QEN71_RS35910at 1438.058 kb on + strand, within QEN71_RS35910at 1438.058 kb on + strand, within QEN71_RS35910at 1438.058 kb on + strand, within QEN71_RS35910at 1438.058 kb on + strand, within QEN71_RS35910at 1438.058 kb on + strand, within QEN71_RS35910at 1438.067 kb on - strand, within QEN71_RS35910at 1438.070 kb on + strand, within QEN71_RS35910at 1438.070 kb on + strand, within QEN71_RS35910at 1438.070 kb on + strand, within QEN71_RS35910at 1438.071 kb on - strand, within QEN71_RS35910at 1438.071 kb on - strand, within QEN71_RS35910at 1438.071 kb on - strand, within QEN71_RS35910at 1438.071 kb on - strand, within QEN71_RS35910at 1438.071 kb on - strand, within QEN71_RS35910at 1438.127 kb on + strand, within QEN71_RS35910at 1438.127 kb on + strand, within QEN71_RS35910at 1438.127 kb on + strand, within QEN71_RS35910at 1438.128 kb on - strand, within QEN71_RS35910at 1438.128 kb on - strand, within QEN71_RS35910

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,435,347 + QEN71_RS35900 0.39 +1.2
1,435,347 + QEN71_RS35900 0.39 -0.3
1,435,347 + QEN71_RS35900 0.39 +0.5
1,435,347 + QEN71_RS35900 0.39 -0.2
1,435,348 - QEN71_RS35900 0.39 -0.5
1,435,367 + QEN71_RS35900 0.40 +1.7
1,435,389 - QEN71_RS35900 0.42 -0.1
1,435,389 - QEN71_RS35900 0.42 +1.4
1,435,527 - QEN71_RS35900 0.53 -1.1
1,435,571 + QEN71_RS35900 0.56 +0.5
1,435,572 - QEN71_RS35900 0.56 +0.1
1,435,841 - QEN71_RS35900 0.76 -1.2
1,435,895 - QEN71_RS35900 0.80 +2.9
1,435,952 + QEN71_RS35900 0.85 +0.3
1,435,952 + QEN71_RS35900 0.85 +1.1
1,435,952 + QEN71_RS35900 0.85 -0.9
1,435,953 - QEN71_RS35900 0.85 +1.2
1,435,953 - QEN71_RS35900 0.85 -1.1
1,435,953 - QEN71_RS35900 0.85 +0.7
1,435,953 - QEN71_RS35900 0.85 -0.5
1,435,953 - QEN71_RS35900 0.85 -0.6
1,436,058 - +0.1
1,436,058 - -0.9
1,436,089 - +0.1
1,436,176 + +1.1
1,436,177 - -3.4
1,436,211 - +0.9
1,436,458 + QEN71_RS35905 0.23 -0.4
1,436,458 + QEN71_RS35905 0.23 +0.7
1,436,459 - QEN71_RS35905 0.23 -0.3
1,436,459 - QEN71_RS35905 0.23 -0.3
1,436,459 - QEN71_RS35905 0.23 +0.7
1,436,627 - QEN71_RS35905 0.41 +1.2
1,436,909 + QEN71_RS35905 0.71 -0.4
1,436,909 + QEN71_RS35905 0.71 +0.2
1,436,909 + QEN71_RS35905 0.71 -0.0
1,436,909 + QEN71_RS35905 0.71 -0.8
1,436,909 + QEN71_RS35905 0.71 -1.3
1,436,909 + QEN71_RS35905 0.71 +1.2
1,436,909 + QEN71_RS35905 0.71 +2.3
1,436,910 - QEN71_RS35905 0.71 -0.7
1,436,943 + QEN71_RS35905 0.74 -0.1
1,436,943 + QEN71_RS35905 0.74 -1.2
1,436,943 + QEN71_RS35905 0.74 -1.0
1,436,943 + QEN71_RS35905 0.74 +0.3
1,436,944 - QEN71_RS35905 0.75 -0.5
1,437,132 - -0.9
1,437,132 - -0.3
1,437,278 + -0.1
1,437,310 + +0.7
1,437,310 + +0.7
1,437,310 + -0.6
1,437,310 + +1.2
1,437,310 + -0.7
1,437,310 + +0.2
1,437,310 + +1.6
1,437,311 - -1.0
1,437,311 - -0.4
1,437,311 - -1.0
1,437,311 - +0.9
1,437,311 - -0.2
1,437,311 - +0.3
1,437,413 - +1.1
1,437,413 - -0.7
1,437,413 - +1.4
1,437,503 - -1.5
1,437,512 + -0.9
1,437,512 + -0.7
1,437,513 - -0.1
1,437,513 - -0.0
1,437,513 - -0.5
1,437,685 + QEN71_RS35910 0.10 +0.3
1,437,685 + QEN71_RS35910 0.10 -0.5
1,437,685 + QEN71_RS35910 0.10 +0.5
1,437,686 - QEN71_RS35910 0.11 +0.5
1,437,686 - QEN71_RS35910 0.11 +0.6
1,437,686 - QEN71_RS35910 0.11 -1.0
1,437,691 - QEN71_RS35910 0.11 +0.3
1,437,701 + QEN71_RS35910 0.12 -0.8
1,437,701 + QEN71_RS35910 0.12 -1.0
1,437,701 + QEN71_RS35910 0.12 +0.6
1,437,702 - QEN71_RS35910 0.12 -0.8
1,437,702 - QEN71_RS35910 0.12 -0.3
1,437,855 + QEN71_RS35910 0.26 +0.1
1,437,932 + QEN71_RS35910 0.33 -1.9
1,437,933 - QEN71_RS35910 0.33 +0.2
1,438,054 - QEN71_RS35910 0.45 -2.4
1,438,058 + QEN71_RS35910 0.45 -1.4
1,438,058 + QEN71_RS35910 0.45 -0.5
1,438,058 + QEN71_RS35910 0.45 +0.3
1,438,058 + QEN71_RS35910 0.45 -0.3
1,438,058 + QEN71_RS35910 0.45 -0.3
1,438,058 + QEN71_RS35910 0.45 +0.4
1,438,067 - QEN71_RS35910 0.46 -0.2
1,438,070 + QEN71_RS35910 0.46 +0.8
1,438,070 + QEN71_RS35910 0.46 -0.7
1,438,070 + QEN71_RS35910 0.46 +0.3
1,438,071 - QEN71_RS35910 0.46 -0.0
1,438,071 - QEN71_RS35910 0.46 +0.9
1,438,071 - QEN71_RS35910 0.46 -1.4
1,438,071 - QEN71_RS35910 0.46 +0.5
1,438,071 - QEN71_RS35910 0.46 -1.5
1,438,127 + QEN71_RS35910 0.51 +0.4
1,438,127 + QEN71_RS35910 0.51 -0.7
1,438,127 + QEN71_RS35910 0.51 +0.3
1,438,128 - QEN71_RS35910 0.51 +0.5
1,438,128 - QEN71_RS35910 0.51 +0.9

Or see this region's nucleotide sequence