Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32810 and QEN71_RS32815 are separated by 134 nucleotides QEN71_RS32815 and QEN71_RS32820 overlap by 14 nucleotides QEN71_RS32820 and QEN71_RS32825 overlap by 4 nucleotides
QEN71_RS32810: QEN71_RS32810 - formaldehyde-activating enzyme, at 692,959 to 693,468
_RS32810
QEN71_RS32815: QEN71_RS32815 - triphosphoribosyl-dephospho-CoA synthase, at 693,603 to 694,478
_RS32815
QEN71_RS32820: QEN71_RS32820 - RimK family alpha-L-glutamate ligase, at 694,465 to 695,448
_RS32820
QEN71_RS32825: QEN71_RS32825 - methenyltetrahydromethanopterin cyclohydrolase, at 695,445 to 696,548
_RS32825
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1
2 at 693.569 kb on - strand at 693.614 kb on + strand at 693.614 kb on + strand at 693.614 kb on + strand at 693.834 kb on + strand, within QEN71_RS32815 at 693.834 kb on + strand, within QEN71_RS32815 at 693.834 kb on + strand, within QEN71_RS32815 at 693.835 kb on - strand, within QEN71_RS32815 at 693.945 kb on - strand, within QEN71_RS32815 at 694.096 kb on + strand, within QEN71_RS32815 at 694.679 kb on + strand, within QEN71_RS32820 at 694.850 kb on + strand, within QEN71_RS32820 at 694.850 kb on + strand, within QEN71_RS32820 at 694.851 kb on - strand, within QEN71_RS32820 at 694.851 kb on - strand, within QEN71_RS32820 at 694.883 kb on + strand, within QEN71_RS32820 at 694.895 kb on + strand, within QEN71_RS32820 at 694.896 kb on - strand, within QEN71_RS32820 at 694.908 kb on + strand, within QEN71_RS32820 at 694.911 kb on - strand, within QEN71_RS32820 at 695.168 kb on + strand, within QEN71_RS32820 at 695.169 kb on - strand, within QEN71_RS32820 at 695.322 kb on + strand, within QEN71_RS32820 at 695.322 kb on + strand, within QEN71_RS32820 at 695.322 kb on + strand, within QEN71_RS32820 at 695.323 kb on - strand, within QEN71_RS32820 at 695.323 kb on - strand, within QEN71_RS32820 at 695.323 kb on - strand, within QEN71_RS32820 at 695.323 kb on - strand, within QEN71_RS32820 at 695.323 kb on - strand, within QEN71_RS32820 at 695.569 kb on + strand, within QEN71_RS32825 at 695.639 kb on - strand, within QEN71_RS32825 at 695.639 kb on - strand, within QEN71_RS32825 at 695.648 kb on - strand, within QEN71_RS32825 at 695.648 kb on - strand, within QEN71_RS32825 at 695.648 kb on - strand, within QEN71_RS32825 at 695.687 kb on - strand, within QEN71_RS32825 at 695.773 kb on + strand, within QEN71_RS32825 at 696.306 kb on + strand, within QEN71_RS32825 at 696.307 kb on - strand, within QEN71_RS32825
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 693,569 - +0.4 693,614 + +0.8 693,614 + -0.3 693,614 + +0.2 693,834 + QEN71_RS32815 0.26 +0.6 693,834 + QEN71_RS32815 0.26 +0.0 693,834 + QEN71_RS32815 0.26 -0.2 693,835 - QEN71_RS32815 0.26 -0.6 693,945 - QEN71_RS32815 0.39 -1.4 694,096 + QEN71_RS32815 0.56 +0.3 694,679 + QEN71_RS32820 0.22 +0.1 694,850 + QEN71_RS32820 0.39 -0.5 694,850 + QEN71_RS32820 0.39 +1.8 694,851 - QEN71_RS32820 0.39 +0.4 694,851 - QEN71_RS32820 0.39 +1.0 694,883 + QEN71_RS32820 0.42 -0.6 694,895 + QEN71_RS32820 0.44 -0.7 694,896 - QEN71_RS32820 0.44 +0.6 694,908 + QEN71_RS32820 0.45 +0.3 694,911 - QEN71_RS32820 0.45 +0.1 695,168 + QEN71_RS32820 0.71 -0.9 695,169 - QEN71_RS32820 0.72 -1.2 695,322 + QEN71_RS32820 0.87 -2.2 695,322 + QEN71_RS32820 0.87 -0.2 695,322 + QEN71_RS32820 0.87 -1.3 695,323 - QEN71_RS32820 0.87 +0.1 695,323 - QEN71_RS32820 0.87 -0.5 695,323 - QEN71_RS32820 0.87 +1.1 695,323 - QEN71_RS32820 0.87 -1.0 695,323 - QEN71_RS32820 0.87 +0.7 695,569 + QEN71_RS32825 0.11 +2.0 695,639 - QEN71_RS32825 0.18 -2.0 695,639 - QEN71_RS32825 0.18 -1.2 695,648 - QEN71_RS32825 0.18 +0.6 695,648 - QEN71_RS32825 0.18 +1.0 695,648 - QEN71_RS32825 0.18 -2.6 695,687 - QEN71_RS32825 0.22 +0.4 695,773 + QEN71_RS32825 0.30 +0.7 696,306 + QEN71_RS32825 0.78 -0.0 696,307 - QEN71_RS32825 0.78 +0.3
Or see this region's nucleotide sequence