Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30960 and QEN71_RS30965 overlap by 4 nucleotides QEN71_RS30965 and QEN71_RS30970 are separated by 289 nucleotides QEN71_RS30970 and QEN71_RS30975 are separated by 19 nucleotides
QEN71_RS30960: QEN71_RS30960 - type II secretion system protein, at 295,632 to 296,024
_RS30960
QEN71_RS30965: QEN71_RS30965 - type II secretion system protein, at 296,021 to 296,641
_RS30965
QEN71_RS30970: QEN71_RS30970 - sigma-54 dependent transcriptional regulator, at 296,931 to 298,316
_RS30970
QEN71_RS30975: QEN71_RS30975 - divalent metal cation transporter, at 298,336 to 299,643
_RS30975
Position (kb) 296
297
298
299 Strain fitness (log2 ratio) -1
0
1 at 295.960 kb on - strand, within QEN71_RS30960 at 296.131 kb on + strand, within QEN71_RS30965 at 296.132 kb on - strand, within QEN71_RS30965 at 296.366 kb on + strand, within QEN71_RS30965 at 296.367 kb on - strand, within QEN71_RS30965 at 296.477 kb on + strand, within QEN71_RS30965 at 296.640 kb on - strand at 296.640 kb on - strand at 296.669 kb on + strand at 296.671 kb on + strand at 297.033 kb on - strand at 297.033 kb on - strand at 297.172 kb on + strand, within QEN71_RS30970 at 297.172 kb on + strand, within QEN71_RS30970 at 297.175 kb on + strand, within QEN71_RS30970 at 297.176 kb on - strand, within QEN71_RS30970 at 297.237 kb on + strand, within QEN71_RS30970 at 297.237 kb on + strand, within QEN71_RS30970 at 297.237 kb on + strand, within QEN71_RS30970 at 297.412 kb on + strand, within QEN71_RS30970 at 297.416 kb on + strand, within QEN71_RS30970 at 297.416 kb on + strand, within QEN71_RS30970 at 297.417 kb on - strand, within QEN71_RS30970 at 297.570 kb on + strand, within QEN71_RS30970 at 297.788 kb on - strand, within QEN71_RS30970 at 297.844 kb on + strand, within QEN71_RS30970 at 297.980 kb on - strand, within QEN71_RS30970 at 297.981 kb on + strand, within QEN71_RS30970 at 298.229 kb on - strand at 298.249 kb on - strand at 299.033 kb on + strand, within QEN71_RS30975 at 299.120 kb on + strand, within QEN71_RS30975 at 299.120 kb on + strand, within QEN71_RS30975
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 295,960 - QEN71_RS30960 0.83 +0.5 296,131 + QEN71_RS30965 0.18 -0.5 296,132 - QEN71_RS30965 0.18 -0.2 296,366 + QEN71_RS30965 0.56 -1.4 296,367 - QEN71_RS30965 0.56 +0.0 296,477 + QEN71_RS30965 0.73 +0.0 296,640 - +0.0 296,640 - -0.2 296,669 + -0.1 296,671 + +0.9 297,033 - +0.6 297,033 - +0.5 297,172 + QEN71_RS30970 0.17 -1.0 297,172 + QEN71_RS30970 0.17 +0.2 297,175 + QEN71_RS30970 0.18 -0.1 297,176 - QEN71_RS30970 0.18 -0.3 297,237 + QEN71_RS30970 0.22 +0.0 297,237 + QEN71_RS30970 0.22 -0.7 297,237 + QEN71_RS30970 0.22 +0.0 297,412 + QEN71_RS30970 0.35 +0.6 297,416 + QEN71_RS30970 0.35 -0.6 297,416 + QEN71_RS30970 0.35 -0.2 297,417 - QEN71_RS30970 0.35 +0.6 297,570 + QEN71_RS30970 0.46 -0.1 297,788 - QEN71_RS30970 0.62 -0.7 297,844 + QEN71_RS30970 0.66 +0.3 297,980 - QEN71_RS30970 0.76 -0.3 297,981 + QEN71_RS30970 0.76 -1.4 298,229 - -1.0 298,249 - +0.0 299,033 + QEN71_RS30975 0.53 -0.7 299,120 + QEN71_RS30975 0.60 -0.3 299,120 + QEN71_RS30975 0.60 +0.0
Or see this region's nucleotide sequence