Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS24620 and QEN71_RS24625 overlap by 4 nucleotides QEN71_RS24625 and QEN71_RS24630 overlap by 1 nucleotides QEN71_RS24630 and QEN71_RS24635 are separated by 180 nucleotides QEN71_RS24635 and QEN71_RS24640 are separated by 91 nucleotides
QEN71_RS24620: QEN71_RS24620 - spermidine synthase, at 5,478,867 to 5,479,784
_RS24620
QEN71_RS24625: QEN71_RS24625 - DNA-deoxyinosine glycosylase, at 5,479,781 to 5,480,254
_RS24625
QEN71_RS24630: QEN71_RS24630 - chorismate lyase, at 5,480,254 to 5,480,946
_RS24630
QEN71_RS24635: QEN71_RS24635 - hypothetical protein, at 5,481,127 to 5,481,393
_RS24635
QEN71_RS24640: QEN71_RS24640 - molecular chaperone HtpG, at 5,481,485 to 5,483,377
_RS24640
Position (kb) 5480
5481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5479.501 kb on + strand, within QEN71_RS24620 at 5479.573 kb on + strand, within QEN71_RS24620 at 5479.736 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.786 kb on + strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.787 kb on - strand at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.831 kb on + strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.832 kb on - strand, within QEN71_RS24625 at 5479.872 kb on + strand, within QEN71_RS24625 at 5479.872 kb on + strand, within QEN71_RS24625 at 5480.157 kb on + strand, within QEN71_RS24625 at 5480.157 kb on + strand, within QEN71_RS24625 at 5480.157 kb on + strand, within QEN71_RS24625 at 5480.158 kb on - strand, within QEN71_RS24625 at 5480.158 kb on - strand, within QEN71_RS24625 at 5480.158 kb on - strand, within QEN71_RS24625 at 5480.158 kb on - strand, within QEN71_RS24625 at 5480.160 kb on + strand, within QEN71_RS24625 at 5480.160 kb on + strand, within QEN71_RS24625 at 5480.161 kb on - strand, within QEN71_RS24625 at 5480.204 kb on + strand, within QEN71_RS24625 at 5480.205 kb on - strand, within QEN71_RS24625 at 5480.205 kb on - strand, within QEN71_RS24625 at 5480.212 kb on + strand at 5480.212 kb on + strand at 5480.212 kb on + strand at 5480.212 kb on + strand at 5480.212 kb on + strand at 5480.212 kb on + strand at 5480.212 kb on + strand at 5480.212 kb on + strand at 5480.213 kb on - strand at 5480.213 kb on - strand at 5480.213 kb on - strand at 5480.213 kb on - strand at 5480.213 kb on - strand at 5480.213 kb on - strand at 5480.213 kb on - strand at 5480.453 kb on + strand, within QEN71_RS24630 at 5480.453 kb on + strand, within QEN71_RS24630 at 5480.454 kb on - strand, within QEN71_RS24630 at 5480.586 kb on + strand, within QEN71_RS24630 at 5480.586 kb on + strand, within QEN71_RS24630 at 5480.586 kb on + strand, within QEN71_RS24630 at 5480.587 kb on - strand, within QEN71_RS24630 at 5480.592 kb on + strand, within QEN71_RS24630 at 5480.593 kb on - strand, within QEN71_RS24630 at 5480.594 kb on + strand, within QEN71_RS24630 at 5480.594 kb on + strand, within QEN71_RS24630 at 5480.594 kb on + strand, within QEN71_RS24630 at 5480.594 kb on + strand, within QEN71_RS24630 at 5480.594 kb on + strand, within QEN71_RS24630 at 5480.594 kb on + strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.595 kb on - strand, within QEN71_RS24630 at 5480.690 kb on + strand, within QEN71_RS24630 at 5480.690 kb on + strand, within QEN71_RS24630 at 5480.691 kb on - strand, within QEN71_RS24630 at 5480.691 kb on - strand, within QEN71_RS24630 at 5480.691 kb on - strand, within QEN71_RS24630 at 5480.691 kb on - strand, within QEN71_RS24630 at 5480.765 kb on + strand, within QEN71_RS24630 at 5480.765 kb on + strand, within QEN71_RS24630 at 5480.765 kb on + strand, within QEN71_RS24630 at 5480.766 kb on - strand, within QEN71_RS24630 at 5480.941 kb on - strand at 5480.956 kb on + strand at 5480.956 kb on + strand at 5480.956 kb on + strand at 5480.957 kb on - strand at 5480.957 kb on - strand at 5480.957 kb on - strand at 5480.957 kb on - strand at 5480.958 kb on + strand at 5480.958 kb on + strand at 5480.958 kb on + strand at 5480.958 kb on + strand at 5480.958 kb on + strand at 5480.959 kb on - strand at 5480.959 kb on - strand at 5480.959 kb on - strand at 5480.959 kb on - strand at 5480.959 kb on - strand at 5481.054 kb on + strand at 5481.054 kb on + strand at 5481.055 kb on - strand at 5481.078 kb on - strand at 5481.098 kb on + strand at 5481.098 kb on + strand at 5481.099 kb on - strand at 5481.099 kb on - strand at 5481.099 kb on - strand at 5481.099 kb on - strand at 5481.099 kb on - strand at 5481.099 kb on - strand at 5481.099 kb on - strand at 5481.099 kb on - strand at 5481.186 kb on - strand, within QEN71_RS24635 at 5481.261 kb on + strand, within QEN71_RS24635 at 5481.261 kb on + strand, within QEN71_RS24635 at 5481.261 kb on + strand, within QEN71_RS24635 at 5481.261 kb on + strand, within QEN71_RS24635 at 5481.262 kb on - strand, within QEN71_RS24635 at 5481.262 kb on - strand, within QEN71_RS24635 at 5481.262 kb on - strand, within QEN71_RS24635 at 5481.262 kb on - strand, within QEN71_RS24635 at 5481.262 kb on - strand, within QEN71_RS24635 at 5481.262 kb on - strand, within QEN71_RS24635 at 5481.401 kb on + strand at 5481.401 kb on + strand at 5481.474 kb on + strand at 5481.475 kb on - strand at 5481.475 kb on - strand at 5481.614 kb on - strand at 5481.721 kb on + strand, within QEN71_RS24640 at 5481.721 kb on + strand, within QEN71_RS24640 at 5481.722 kb on - strand, within QEN71_RS24640
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 5,479,501 + QEN71_RS24620 0.69 +2.0 5,479,573 + QEN71_RS24620 0.77 +0.1 5,479,736 + -0.1 5,479,786 + -0.4 5,479,786 + -0.8 5,479,786 + -0.0 5,479,786 + +1.6 5,479,786 + -0.4 5,479,786 + -1.4 5,479,786 + -1.0 5,479,786 + -1.7 5,479,786 + +0.3 5,479,786 + -1.2 5,479,786 + -1.8 5,479,786 + -1.0 5,479,786 + -0.9 5,479,786 + -0.3 5,479,786 + -0.7 5,479,786 + -0.6 5,479,786 + +0.6 5,479,786 + -0.2 5,479,786 + -1.6 5,479,786 + -0.5 5,479,786 + -1.9 5,479,786 + -0.5 5,479,786 + -0.1 5,479,786 + +1.5 5,479,786 + +0.8 5,479,786 + +0.2 5,479,786 + -0.0 5,479,786 + -0.4 5,479,787 - -2.4 5,479,787 - -1.4 5,479,787 - -0.1 5,479,787 - +0.1 5,479,787 - -0.0 5,479,787 - -0.5 5,479,787 - -0.0 5,479,787 - -0.1 5,479,787 - +0.9 5,479,787 - -2.0 5,479,787 - -1.1 5,479,787 - -1.6 5,479,787 - -0.8 5,479,787 - +0.4 5,479,787 - -1.5 5,479,787 - +1.5 5,479,787 - -1.2 5,479,787 - -0.8 5,479,787 - -0.0 5,479,787 - -0.2 5,479,787 - +2.2 5,479,787 - +0.3 5,479,831 + QEN71_RS24625 0.11 -0.7 5,479,831 + QEN71_RS24625 0.11 -0.4 5,479,831 + QEN71_RS24625 0.11 -0.2 5,479,831 + QEN71_RS24625 0.11 +0.6 5,479,831 + QEN71_RS24625 0.11 -0.0 5,479,831 + QEN71_RS24625 0.11 +0.6 5,479,831 + QEN71_RS24625 0.11 +0.0 5,479,831 + QEN71_RS24625 0.11 -0.2 5,479,831 + QEN71_RS24625 0.11 -0.2 5,479,831 + QEN71_RS24625 0.11 +0.6 5,479,831 + QEN71_RS24625 0.11 +0.1 5,479,831 + QEN71_RS24625 0.11 +0.5 5,479,831 + QEN71_RS24625 0.11 -2.4 5,479,832 - QEN71_RS24625 0.11 +0.6 5,479,832 - QEN71_RS24625 0.11 -0.5 5,479,832 - QEN71_RS24625 0.11 +0.3 5,479,832 - QEN71_RS24625 0.11 +0.6 5,479,832 - QEN71_RS24625 0.11 +0.2 5,479,832 - QEN71_RS24625 0.11 +0.6 5,479,832 - QEN71_RS24625 0.11 +0.6 5,479,832 - QEN71_RS24625 0.11 +0.8 5,479,832 - QEN71_RS24625 0.11 +0.4 5,479,832 - QEN71_RS24625 0.11 -0.5 5,479,832 - QEN71_RS24625 0.11 +0.2 5,479,832 - QEN71_RS24625 0.11 +0.2 5,479,832 - QEN71_RS24625 0.11 +0.2 5,479,872 + QEN71_RS24625 0.19 -1.5 5,479,872 + QEN71_RS24625 0.19 -0.0 5,480,157 + QEN71_RS24625 0.79 +0.2 5,480,157 + QEN71_RS24625 0.79 -0.4 5,480,157 + QEN71_RS24625 0.79 -0.8 5,480,158 - QEN71_RS24625 0.80 -0.8 5,480,158 - QEN71_RS24625 0.80 -0.1 5,480,158 - QEN71_RS24625 0.80 -0.0 5,480,158 - QEN71_RS24625 0.80 -1.7 5,480,160 + QEN71_RS24625 0.80 -1.5 5,480,160 + QEN71_RS24625 0.80 -0.6 5,480,161 - QEN71_RS24625 0.80 -0.9 5,480,204 + QEN71_RS24625 0.89 -0.1 5,480,205 - QEN71_RS24625 0.89 +1.0 5,480,205 - QEN71_RS24625 0.89 -1.6 5,480,212 + -0.2 5,480,212 + +0.1 5,480,212 + +1.6 5,480,212 + +1.0 5,480,212 + -0.8 5,480,212 + -0.6 5,480,212 + -0.4 5,480,212 + +1.0 5,480,213 - -0.6 5,480,213 - -0.0 5,480,213 - -0.2 5,480,213 - -0.1 5,480,213 - -0.3 5,480,213 - -0.1 5,480,213 - -0.3 5,480,453 + QEN71_RS24630 0.29 +1.2 5,480,453 + QEN71_RS24630 0.29 -1.2 5,480,454 - QEN71_RS24630 0.29 +0.3 5,480,586 + QEN71_RS24630 0.48 -0.4 5,480,586 + QEN71_RS24630 0.48 -0.2 5,480,586 + QEN71_RS24630 0.48 +1.0 5,480,587 - QEN71_RS24630 0.48 +0.1 5,480,592 + QEN71_RS24630 0.49 -0.8 5,480,593 - QEN71_RS24630 0.49 -0.3 5,480,594 + QEN71_RS24630 0.49 -0.1 5,480,594 + QEN71_RS24630 0.49 -0.4 5,480,594 + QEN71_RS24630 0.49 +2.0 5,480,594 + QEN71_RS24630 0.49 -0.8 5,480,594 + QEN71_RS24630 0.49 -0.1 5,480,594 + QEN71_RS24630 0.49 +0.3 5,480,595 - QEN71_RS24630 0.49 -0.1 5,480,595 - QEN71_RS24630 0.49 +0.3 5,480,595 - QEN71_RS24630 0.49 -0.8 5,480,595 - QEN71_RS24630 0.49 -0.6 5,480,595 - QEN71_RS24630 0.49 -0.9 5,480,595 - QEN71_RS24630 0.49 -0.5 5,480,595 - QEN71_RS24630 0.49 -1.0 5,480,595 - QEN71_RS24630 0.49 +0.8 5,480,690 + QEN71_RS24630 0.63 +0.8 5,480,690 + QEN71_RS24630 0.63 -1.0 5,480,691 - QEN71_RS24630 0.63 -0.5 5,480,691 - QEN71_RS24630 0.63 +2.0 5,480,691 - QEN71_RS24630 0.63 -0.8 5,480,691 - QEN71_RS24630 0.63 +0.6 5,480,765 + QEN71_RS24630 0.74 -0.6 5,480,765 + QEN71_RS24630 0.74 -1.1 5,480,765 + QEN71_RS24630 0.74 +0.0 5,480,766 - QEN71_RS24630 0.74 -0.5 5,480,941 - +0.8 5,480,956 + -0.5 5,480,956 + -0.9 5,480,956 + +0.4 5,480,957 - +0.2 5,480,957 - -1.0 5,480,957 - -0.6 5,480,957 - -1.5 5,480,958 + -1.0 5,480,958 + +0.2 5,480,958 + +1.6 5,480,958 + -0.1 5,480,958 + +0.1 5,480,959 - +0.8 5,480,959 - +0.6 5,480,959 - -1.5 5,480,959 - -0.4 5,480,959 - -2.2 5,481,054 + -1.2 5,481,054 + -1.0 5,481,055 - -3.2 5,481,078 - -2.7 5,481,098 + +1.0 5,481,098 + -0.1 5,481,099 - +1.0 5,481,099 - -0.6 5,481,099 - -0.4 5,481,099 - +0.0 5,481,099 - +0.2 5,481,099 - +0.7 5,481,099 - -0.2 5,481,099 - -1.0 5,481,186 - QEN71_RS24635 0.22 -1.0 5,481,261 + QEN71_RS24635 0.50 -0.0 5,481,261 + QEN71_RS24635 0.50 -0.0 5,481,261 + QEN71_RS24635 0.50 +0.2 5,481,261 + QEN71_RS24635 0.50 -1.5 5,481,262 - QEN71_RS24635 0.51 +0.2 5,481,262 - QEN71_RS24635 0.51 -0.2 5,481,262 - QEN71_RS24635 0.51 -0.9 5,481,262 - QEN71_RS24635 0.51 -0.3 5,481,262 - QEN71_RS24635 0.51 -1.0 5,481,262 - QEN71_RS24635 0.51 +0.4 5,481,401 + -0.5 5,481,401 + -0.1 5,481,474 + -0.3 5,481,475 - +1.2 5,481,475 - -0.1 5,481,614 - -0.3 5,481,721 + QEN71_RS24640 0.12 -0.4 5,481,721 + QEN71_RS24640 0.12 -0.5 5,481,722 - QEN71_RS24640 0.13 +0.2
Or see this region's nucleotide sequence