Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14115

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14110 and QEN71_RS14115 are separated by 138 nucleotidesQEN71_RS14115 and QEN71_RS14120 are separated by 72 nucleotides QEN71_RS14110: QEN71_RS14110 - alkaline phosphatase family protein, at 3,147,716 to 3,149,551 _RS14110 QEN71_RS14115: QEN71_RS14115 - cytochrome c peroxidase, at 3,149,690 to 3,151,126 _RS14115 QEN71_RS14120: QEN71_RS14120 - lipoyl synthase, at 3,151,199 to 3,152,185 _RS14120 Position (kb) 3149 3150 3151 3152Strain fitness (log2 ratio) -2 -1 0 1 2at 3148.763 kb on + strand, within QEN71_RS14110at 3148.764 kb on - strand, within QEN71_RS14110at 3148.764 kb on - strand, within QEN71_RS14110at 3148.790 kb on + strand, within QEN71_RS14110at 3148.793 kb on + strand, within QEN71_RS14110at 3148.899 kb on - strand, within QEN71_RS14110at 3148.899 kb on - strand, within QEN71_RS14110at 3149.091 kb on - strand, within QEN71_RS14110at 3149.091 kb on - strand, within QEN71_RS14110at 3149.111 kb on + strand, within QEN71_RS14110at 3149.299 kb on + strand, within QEN71_RS14110at 3149.619 kb on - strandat 3149.619 kb on - strandat 3149.825 kb on + strandat 3149.825 kb on + strandat 3149.826 kb on - strandat 3150.128 kb on + strand, within QEN71_RS14115at 3150.128 kb on + strand, within QEN71_RS14115at 3150.129 kb on - strand, within QEN71_RS14115at 3150.274 kb on - strand, within QEN71_RS14115at 3150.408 kb on - strand, within QEN71_RS14115at 3150.408 kb on - strand, within QEN71_RS14115at 3150.498 kb on - strand, within QEN71_RS14115at 3150.539 kb on + strand, within QEN71_RS14115at 3150.540 kb on - strand, within QEN71_RS14115at 3150.540 kb on - strand, within QEN71_RS14115at 3150.753 kb on - strand, within QEN71_RS14115at 3150.753 kb on - strand, within QEN71_RS14115at 3150.806 kb on + strand, within QEN71_RS14115at 3150.879 kb on - strand, within QEN71_RS14115at 3150.879 kb on - strand, within QEN71_RS14115at 3150.909 kb on - strand, within QEN71_RS14115at 3150.942 kb on - strand, within QEN71_RS14115at 3150.995 kb on + strandat 3151.099 kb on + strandat 3151.192 kb on + strandat 3151.200 kb on + strandat 3151.613 kb on + strand, within QEN71_RS14120at 3151.613 kb on + strand, within QEN71_RS14120at 3151.614 kb on - strand, within QEN71_RS14120at 3151.773 kb on + strand, within QEN71_RS14120at 3151.773 kb on + strand, within QEN71_RS14120at 3151.774 kb on - strand, within QEN71_RS14120

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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3,148,763 + QEN71_RS14110 0.57 +0.6
3,148,764 - QEN71_RS14110 0.57 -0.0
3,148,764 - QEN71_RS14110 0.57 -0.6
3,148,790 + QEN71_RS14110 0.58 -0.5
3,148,793 + QEN71_RS14110 0.59 -0.4
3,148,899 - QEN71_RS14110 0.64 +0.7
3,148,899 - QEN71_RS14110 0.64 -1.0
3,149,091 - QEN71_RS14110 0.75 -0.2
3,149,091 - QEN71_RS14110 0.75 +2.0
3,149,111 + QEN71_RS14110 0.76 -0.0
3,149,299 + QEN71_RS14110 0.86 -0.3
3,149,619 - -0.8
3,149,619 - +0.7
3,149,825 + -0.0
3,149,825 + -0.9
3,149,826 - -0.3
3,150,128 + QEN71_RS14115 0.30 +0.4
3,150,128 + QEN71_RS14115 0.30 -0.0
3,150,129 - QEN71_RS14115 0.31 -0.5
3,150,274 - QEN71_RS14115 0.41 +0.4
3,150,408 - QEN71_RS14115 0.50 -0.1
3,150,408 - QEN71_RS14115 0.50 -0.1
3,150,498 - QEN71_RS14115 0.56 -1.3
3,150,539 + QEN71_RS14115 0.59 +0.1
3,150,540 - QEN71_RS14115 0.59 +0.5
3,150,540 - QEN71_RS14115 0.59 +1.7
3,150,753 - QEN71_RS14115 0.74 +0.2
3,150,753 - QEN71_RS14115 0.74 +1.0
3,150,806 + QEN71_RS14115 0.78 -0.2
3,150,879 - QEN71_RS14115 0.83 +2.3
3,150,879 - QEN71_RS14115 0.83 -0.4
3,150,909 - QEN71_RS14115 0.85 +0.7
3,150,942 - QEN71_RS14115 0.87 -0.2
3,150,995 + +0.1
3,151,099 + -1.0
3,151,192 + -1.8
3,151,200 + -0.6
3,151,613 + QEN71_RS14120 0.42 -0.0
3,151,613 + QEN71_RS14120 0.42 -0.3
3,151,614 - QEN71_RS14120 0.42 -1.6
3,151,773 + QEN71_RS14120 0.58 -0.6
3,151,773 + QEN71_RS14120 0.58 -0.8
3,151,774 - QEN71_RS14120 0.58 +1.1

Or see this region's nucleotide sequence