Experiment: Motility_inner_sample
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS14110 and QEN71_RS14115 are separated by 138 nucleotides QEN71_RS14115 and QEN71_RS14120 are separated by 72 nucleotides
QEN71_RS14110: QEN71_RS14110 - alkaline phosphatase family protein, at 3,147,716 to 3,149,551
_RS14110
QEN71_RS14115: QEN71_RS14115 - cytochrome c peroxidase, at 3,149,690 to 3,151,126
_RS14115
QEN71_RS14120: QEN71_RS14120 - lipoyl synthase, at 3,151,199 to 3,152,185
_RS14120
Position (kb)
3149
3150
3151
3152 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3148.763 kb on + strand, within QEN71_RS14110 at 3148.764 kb on - strand, within QEN71_RS14110 at 3148.764 kb on - strand, within QEN71_RS14110 at 3148.790 kb on + strand, within QEN71_RS14110 at 3148.793 kb on + strand, within QEN71_RS14110 at 3148.899 kb on - strand, within QEN71_RS14110 at 3148.899 kb on - strand, within QEN71_RS14110 at 3149.091 kb on - strand, within QEN71_RS14110 at 3149.091 kb on - strand, within QEN71_RS14110 at 3149.111 kb on + strand, within QEN71_RS14110 at 3149.299 kb on + strand, within QEN71_RS14110 at 3149.619 kb on - strand at 3149.619 kb on - strand at 3149.825 kb on + strand at 3149.825 kb on + strand at 3149.826 kb on - strand at 3150.128 kb on + strand, within QEN71_RS14115 at 3150.128 kb on + strand, within QEN71_RS14115 at 3150.129 kb on - strand, within QEN71_RS14115 at 3150.274 kb on - strand, within QEN71_RS14115 at 3150.408 kb on - strand, within QEN71_RS14115 at 3150.408 kb on - strand, within QEN71_RS14115 at 3150.498 kb on - strand, within QEN71_RS14115 at 3150.539 kb on + strand, within QEN71_RS14115 at 3150.540 kb on - strand, within QEN71_RS14115 at 3150.540 kb on - strand, within QEN71_RS14115 at 3150.753 kb on - strand, within QEN71_RS14115 at 3150.753 kb on - strand, within QEN71_RS14115 at 3150.806 kb on + strand, within QEN71_RS14115 at 3150.879 kb on - strand, within QEN71_RS14115 at 3150.879 kb on - strand, within QEN71_RS14115 at 3150.909 kb on - strand, within QEN71_RS14115 at 3150.942 kb on - strand, within QEN71_RS14115 at 3150.995 kb on + strand at 3151.099 kb on + strand at 3151.192 kb on + strand at 3151.200 kb on + strand at 3151.613 kb on + strand, within QEN71_RS14120 at 3151.613 kb on + strand, within QEN71_RS14120 at 3151.614 kb on - strand, within QEN71_RS14120 at 3151.773 kb on + strand, within QEN71_RS14120 at 3151.773 kb on + strand, within QEN71_RS14120 at 3151.774 kb on - strand, within QEN71_RS14120
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample remove 3,148,763 + QEN71_RS14110 0.57 +0.6 3,148,764 - QEN71_RS14110 0.57 -0.0 3,148,764 - QEN71_RS14110 0.57 -0.6 3,148,790 + QEN71_RS14110 0.58 -0.5 3,148,793 + QEN71_RS14110 0.59 -0.4 3,148,899 - QEN71_RS14110 0.64 +0.7 3,148,899 - QEN71_RS14110 0.64 -1.0 3,149,091 - QEN71_RS14110 0.75 -0.2 3,149,091 - QEN71_RS14110 0.75 +2.0 3,149,111 + QEN71_RS14110 0.76 -0.0 3,149,299 + QEN71_RS14110 0.86 -0.3 3,149,619 - -0.8 3,149,619 - +0.7 3,149,825 + -0.0 3,149,825 + -0.9 3,149,826 - -0.3 3,150,128 + QEN71_RS14115 0.30 +0.4 3,150,128 + QEN71_RS14115 0.30 -0.0 3,150,129 - QEN71_RS14115 0.31 -0.5 3,150,274 - QEN71_RS14115 0.41 +0.4 3,150,408 - QEN71_RS14115 0.50 -0.1 3,150,408 - QEN71_RS14115 0.50 -0.1 3,150,498 - QEN71_RS14115 0.56 -1.3 3,150,539 + QEN71_RS14115 0.59 +0.1 3,150,540 - QEN71_RS14115 0.59 +0.5 3,150,540 - QEN71_RS14115 0.59 +1.7 3,150,753 - QEN71_RS14115 0.74 +0.2 3,150,753 - QEN71_RS14115 0.74 +1.0 3,150,806 + QEN71_RS14115 0.78 -0.2 3,150,879 - QEN71_RS14115 0.83 +2.3 3,150,879 - QEN71_RS14115 0.83 -0.4 3,150,909 - QEN71_RS14115 0.85 +0.7 3,150,942 - QEN71_RS14115 0.87 -0.2 3,150,995 + +0.1 3,151,099 + -1.0 3,151,192 + -1.8 3,151,200 + -0.6 3,151,613 + QEN71_RS14120 0.42 -0.0 3,151,613 + QEN71_RS14120 0.42 -0.3 3,151,614 - QEN71_RS14120 0.42 -1.6 3,151,773 + QEN71_RS14120 0.58 -0.6 3,151,773 + QEN71_RS14120 0.58 -0.8 3,151,774 - QEN71_RS14120 0.58 +1.1
Or see this region's nucleotide sequence