Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10170

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10165 and QEN71_RS10170 are separated by 4 nucleotidesQEN71_RS10170 and QEN71_RS10175 are separated by 100 nucleotides QEN71_RS10165: QEN71_RS10165 - DMT family transporter, at 2,265,436 to 2,266,356 _RS10165 QEN71_RS10170: QEN71_RS10170 - Fe2+-dependent dioxygenase, at 2,266,361 to 2,267,044 _RS10170 QEN71_RS10175: QEN71_RS10175 - TonB-dependent siderophore receptor, at 2,267,145 to 2,269,382 _RS10175 Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -2 -1 0 1 2at 2265.669 kb on - strand, within QEN71_RS10165at 2265.673 kb on + strand, within QEN71_RS10165at 2265.674 kb on - strand, within QEN71_RS10165at 2265.674 kb on - strand, within QEN71_RS10165at 2265.895 kb on + strand, within QEN71_RS10165at 2265.895 kb on + strand, within QEN71_RS10165at 2265.896 kb on - strand, within QEN71_RS10165at 2265.896 kb on - strand, within QEN71_RS10165at 2265.896 kb on - strand, within QEN71_RS10165at 2266.123 kb on + strand, within QEN71_RS10165at 2266.124 kb on - strand, within QEN71_RS10165at 2266.124 kb on - strand, within QEN71_RS10165at 2266.132 kb on + strand, within QEN71_RS10165at 2266.135 kb on + strand, within QEN71_RS10165at 2266.136 kb on - strand, within QEN71_RS10165at 2266.136 kb on - strand, within QEN71_RS10165at 2266.183 kb on + strand, within QEN71_RS10165at 2266.183 kb on + strand, within QEN71_RS10165at 2266.183 kb on + strand, within QEN71_RS10165at 2266.362 kb on + strandat 2266.362 kb on + strandat 2266.362 kb on + strandat 2266.363 kb on - strandat 2266.363 kb on - strandat 2266.396 kb on - strandat 2266.630 kb on - strand, within QEN71_RS10170at 2266.630 kb on - strand, within QEN71_RS10170at 2266.630 kb on - strand, within QEN71_RS10170at 2266.630 kb on - strand, within QEN71_RS10170at 2266.634 kb on - strand, within QEN71_RS10170at 2266.783 kb on - strand, within QEN71_RS10170at 2266.804 kb on - strand, within QEN71_RS10170at 2267.022 kb on - strandat 2267.158 kb on + strandat 2267.233 kb on + strandat 2267.278 kb on + strandat 2267.371 kb on + strand, within QEN71_RS10175at 2267.371 kb on + strand, within QEN71_RS10175at 2267.371 kb on + strand, within QEN71_RS10175at 2267.371 kb on + strand, within QEN71_RS10175at 2267.413 kb on + strand, within QEN71_RS10175at 2267.413 kb on + strand, within QEN71_RS10175at 2267.414 kb on - strand, within QEN71_RS10175at 2267.414 kb on - strand, within QEN71_RS10175at 2267.414 kb on - strand, within QEN71_RS10175at 2267.414 kb on - strand, within QEN71_RS10175at 2267.414 kb on - strand, within QEN71_RS10175at 2267.435 kb on + strand, within QEN71_RS10175at 2267.435 kb on + strand, within QEN71_RS10175at 2267.435 kb on + strand, within QEN71_RS10175at 2267.436 kb on - strand, within QEN71_RS10175at 2267.506 kb on + strand, within QEN71_RS10175at 2267.506 kb on + strand, within QEN71_RS10175at 2267.506 kb on + strand, within QEN71_RS10175at 2267.506 kb on + strand, within QEN71_RS10175at 2267.507 kb on - strand, within QEN71_RS10175at 2267.507 kb on - strand, within QEN71_RS10175at 2267.507 kb on - strand, within QEN71_RS10175at 2267.507 kb on - strand, within QEN71_RS10175at 2267.507 kb on - strand, within QEN71_RS10175at 2267.510 kb on + strand, within QEN71_RS10175at 2267.510 kb on + strand, within QEN71_RS10175at 2267.510 kb on + strand, within QEN71_RS10175at 2267.511 kb on - strand, within QEN71_RS10175at 2267.511 kb on - strand, within QEN71_RS10175at 2267.600 kb on - strand, within QEN71_RS10175at 2267.717 kb on + strand, within QEN71_RS10175at 2267.717 kb on + strand, within QEN71_RS10175at 2267.717 kb on + strand, within QEN71_RS10175at 2267.717 kb on + strand, within QEN71_RS10175at 2267.718 kb on - strand, within QEN71_RS10175at 2267.791 kb on + strand, within QEN71_RS10175at 2267.791 kb on + strand, within QEN71_RS10175at 2267.801 kb on - strand, within QEN71_RS10175at 2267.801 kb on - strand, within QEN71_RS10175at 2267.827 kb on + strand, within QEN71_RS10175at 2267.827 kb on + strand, within QEN71_RS10175at 2267.828 kb on - strand, within QEN71_RS10175at 2267.858 kb on - strand, within QEN71_RS10175at 2267.858 kb on - strand, within QEN71_RS10175at 2267.914 kb on + strand, within QEN71_RS10175at 2267.915 kb on - strand, within QEN71_RS10175at 2267.980 kb on + strand, within QEN71_RS10175at 2267.980 kb on + strand, within QEN71_RS10175at 2267.981 kb on - strand, within QEN71_RS10175

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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2,265,669 - QEN71_RS10165 0.25 +0.1
2,265,673 + QEN71_RS10165 0.26 +1.3
2,265,674 - QEN71_RS10165 0.26 +0.1
2,265,674 - QEN71_RS10165 0.26 -2.1
2,265,895 + QEN71_RS10165 0.50 -1.6
2,265,895 + QEN71_RS10165 0.50 -0.7
2,265,896 - QEN71_RS10165 0.50 +0.3
2,265,896 - QEN71_RS10165 0.50 -0.4
2,265,896 - QEN71_RS10165 0.50 -0.1
2,266,123 + QEN71_RS10165 0.75 +2.0
2,266,124 - QEN71_RS10165 0.75 +1.5
2,266,124 - QEN71_RS10165 0.75 -0.7
2,266,132 + QEN71_RS10165 0.76 -1.5
2,266,135 + QEN71_RS10165 0.76 -2.7
2,266,136 - QEN71_RS10165 0.76 -0.1
2,266,136 - QEN71_RS10165 0.76 -1.0
2,266,183 + QEN71_RS10165 0.81 -1.0
2,266,183 + QEN71_RS10165 0.81 -0.3
2,266,183 + QEN71_RS10165 0.81 -0.9
2,266,362 + +0.5
2,266,362 + -0.5
2,266,362 + -1.3
2,266,363 - +0.7
2,266,363 - -0.4
2,266,396 - +1.4
2,266,630 - QEN71_RS10170 0.39 -0.0
2,266,630 - QEN71_RS10170 0.39 -0.5
2,266,630 - QEN71_RS10170 0.39 -1.3
2,266,630 - QEN71_RS10170 0.39 -0.1
2,266,634 - QEN71_RS10170 0.40 +0.5
2,266,783 - QEN71_RS10170 0.62 -0.7
2,266,804 - QEN71_RS10170 0.65 +0.2
2,267,022 - +0.3
2,267,158 + +1.6
2,267,233 + +0.4
2,267,278 + -2.0
2,267,371 + QEN71_RS10175 0.10 +0.5
2,267,371 + QEN71_RS10175 0.10 -0.7
2,267,371 + QEN71_RS10175 0.10 +0.6
2,267,371 + QEN71_RS10175 0.10 +0.6
2,267,413 + QEN71_RS10175 0.12 +0.6
2,267,413 + QEN71_RS10175 0.12 -2.1
2,267,414 - QEN71_RS10175 0.12 -1.1
2,267,414 - QEN71_RS10175 0.12 -0.3
2,267,414 - QEN71_RS10175 0.12 -1.6
2,267,414 - QEN71_RS10175 0.12 +1.4
2,267,414 - QEN71_RS10175 0.12 +0.9
2,267,435 + QEN71_RS10175 0.13 -0.1
2,267,435 + QEN71_RS10175 0.13 +1.1
2,267,435 + QEN71_RS10175 0.13 -0.4
2,267,436 - QEN71_RS10175 0.13 -0.1
2,267,506 + QEN71_RS10175 0.16 +0.5
2,267,506 + QEN71_RS10175 0.16 -0.2
2,267,506 + QEN71_RS10175 0.16 -0.7
2,267,506 + QEN71_RS10175 0.16 +0.5
2,267,507 - QEN71_RS10175 0.16 +0.3
2,267,507 - QEN71_RS10175 0.16 -0.5
2,267,507 - QEN71_RS10175 0.16 +1.0
2,267,507 - QEN71_RS10175 0.16 +1.5
2,267,507 - QEN71_RS10175 0.16 +0.9
2,267,510 + QEN71_RS10175 0.16 +0.9
2,267,510 + QEN71_RS10175 0.16 -0.8
2,267,510 + QEN71_RS10175 0.16 +0.9
2,267,511 - QEN71_RS10175 0.16 -1.0
2,267,511 - QEN71_RS10175 0.16 -1.5
2,267,600 - QEN71_RS10175 0.20 -0.2
2,267,717 + QEN71_RS10175 0.26 -0.3
2,267,717 + QEN71_RS10175 0.26 +1.1
2,267,717 + QEN71_RS10175 0.26 -0.4
2,267,717 + QEN71_RS10175 0.26 -0.4
2,267,718 - QEN71_RS10175 0.26 -1.2
2,267,791 + QEN71_RS10175 0.29 -0.6
2,267,791 + QEN71_RS10175 0.29 +0.7
2,267,801 - QEN71_RS10175 0.29 -0.7
2,267,801 - QEN71_RS10175 0.29 -0.7
2,267,827 + QEN71_RS10175 0.30 +0.1
2,267,827 + QEN71_RS10175 0.30 -0.9
2,267,828 - QEN71_RS10175 0.31 -0.5
2,267,858 - QEN71_RS10175 0.32 +0.3
2,267,858 - QEN71_RS10175 0.32 -1.1
2,267,914 + QEN71_RS10175 0.34 -1.2
2,267,915 - QEN71_RS10175 0.34 +0.0
2,267,980 + QEN71_RS10175 0.37 -0.1
2,267,980 + QEN71_RS10175 0.37 -0.5
2,267,981 - QEN71_RS10175 0.37 -0.5

Or see this region's nucleotide sequence