Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08210

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08205 and QEN71_RS08210 are separated by 243 nucleotidesQEN71_RS08210 and QEN71_RS08215 are separated by 40 nucleotides QEN71_RS08205: QEN71_RS08205 - sulfatase-like hydrolase/transferase, at 1,817,429 to 1,819,087 _RS08205 QEN71_RS08210: QEN71_RS08210 - SDR family oxidoreductase, at 1,819,331 to 1,820,116 _RS08210 QEN71_RS08215: QEN71_RS08215 - DUF1254 domain-containing protein, at 1,820,157 to 1,821,626 _RS08215 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -2 -1 0 1at 1818.372 kb on + strand, within QEN71_RS08205at 1818.372 kb on + strand, within QEN71_RS08205at 1818.372 kb on + strand, within QEN71_RS08205at 1818.373 kb on - strand, within QEN71_RS08205at 1818.411 kb on + strand, within QEN71_RS08205at 1818.435 kb on + strand, within QEN71_RS08205at 1818.541 kb on + strand, within QEN71_RS08205at 1818.543 kb on + strand, within QEN71_RS08205at 1818.607 kb on - strand, within QEN71_RS08205at 1818.607 kb on - strand, within QEN71_RS08205at 1819.175 kb on - strandat 1819.206 kb on - strandat 1819.240 kb on - strandat 1819.334 kb on + strandat 1819.351 kb on - strandat 1819.599 kb on + strand, within QEN71_RS08210at 1819.599 kb on + strand, within QEN71_RS08210at 1819.600 kb on - strand, within QEN71_RS08210at 1819.600 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1819.974 kb on - strand, within QEN71_RS08210at 1820.304 kb on + strand, within QEN71_RS08215at 1820.304 kb on + strand, within QEN71_RS08215at 1820.305 kb on - strand, within QEN71_RS08215at 1820.460 kb on + strand, within QEN71_RS08215at 1820.460 kb on + strand, within QEN71_RS08215at 1820.461 kb on - strand, within QEN71_RS08215at 1820.463 kb on - strand, within QEN71_RS08215at 1820.640 kb on + strand, within QEN71_RS08215at 1820.640 kb on + strand, within QEN71_RS08215at 1820.641 kb on - strand, within QEN71_RS08215at 1820.661 kb on + strand, within QEN71_RS08215at 1820.661 kb on + strand, within QEN71_RS08215at 1820.661 kb on + strand, within QEN71_RS08215at 1820.662 kb on - strand, within QEN71_RS08215at 1820.729 kb on + strand, within QEN71_RS08215at 1820.729 kb on + strand, within QEN71_RS08215at 1820.730 kb on - strand, within QEN71_RS08215

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,818,372 + QEN71_RS08205 0.57 -0.7
1,818,372 + QEN71_RS08205 0.57 +0.1
1,818,372 + QEN71_RS08205 0.57 -1.1
1,818,373 - QEN71_RS08205 0.57 -0.5
1,818,411 + QEN71_RS08205 0.59 -0.3
1,818,435 + QEN71_RS08205 0.61 +0.0
1,818,541 + QEN71_RS08205 0.67 -0.3
1,818,543 + QEN71_RS08205 0.67 -0.2
1,818,607 - QEN71_RS08205 0.71 -0.5
1,818,607 - QEN71_RS08205 0.71 +0.4
1,819,175 - -0.4
1,819,206 - +0.1
1,819,240 - -1.2
1,819,334 + -0.1
1,819,351 - -0.1
1,819,599 + QEN71_RS08210 0.34 -0.1
1,819,599 + QEN71_RS08210 0.34 -1.0
1,819,600 - QEN71_RS08210 0.34 -0.2
1,819,600 - QEN71_RS08210 0.34 -1.6
1,819,974 - QEN71_RS08210 0.82 -0.8
1,819,974 - QEN71_RS08210 0.82 -1.1
1,819,974 - QEN71_RS08210 0.82 +0.2
1,819,974 - QEN71_RS08210 0.82 -0.1
1,820,304 + QEN71_RS08215 0.10 -0.7
1,820,304 + QEN71_RS08215 0.10 -0.5
1,820,305 - QEN71_RS08215 0.10 -0.3
1,820,460 + QEN71_RS08215 0.21 -0.8
1,820,460 + QEN71_RS08215 0.21 -0.4
1,820,461 - QEN71_RS08215 0.21 -0.4
1,820,463 - QEN71_RS08215 0.21 -0.9
1,820,640 + QEN71_RS08215 0.33 +0.4
1,820,640 + QEN71_RS08215 0.33 +0.9
1,820,641 - QEN71_RS08215 0.33 +0.4
1,820,661 + QEN71_RS08215 0.34 -1.6
1,820,661 + QEN71_RS08215 0.34 -0.0
1,820,661 + QEN71_RS08215 0.34 +0.4
1,820,662 - QEN71_RS08215 0.34 -0.5
1,820,729 + QEN71_RS08215 0.39 -0.9
1,820,729 + QEN71_RS08215 0.39 -1.8
1,820,730 - QEN71_RS08215 0.39 -0.2

Or see this region's nucleotide sequence