Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06540

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06535 and QEN71_RS06540 are separated by 296 nucleotidesQEN71_RS06540 and QEN71_RS06545 are separated by 6 nucleotides QEN71_RS06535: QEN71_RS06535 - DMT family transporter, at 1,450,844 to 1,451,818 _RS06535 QEN71_RS06540: QEN71_RS06540 - IMP dehydrogenase, at 1,452,115 to 1,453,575 _RS06540 QEN71_RS06545: QEN71_RS06545 - hypothetical protein, at 1,453,582 to 1,454,409 _RS06545 Position (kb) 1452 1453 1454Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1451.149 kb on + strand, within QEN71_RS06535at 1451.286 kb on + strand, within QEN71_RS06535at 1451.287 kb on - strand, within QEN71_RS06535at 1451.287 kb on - strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.580 kb on + strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.581 kb on - strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.583 kb on + strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.584 kb on - strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.697 kb on + strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.698 kb on - strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.706 kb on + strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.707 kb on - strand, within QEN71_RS06535at 1451.777 kb on + strandat 1451.799 kb on + strandat 1451.799 kb on + strandat 1451.799 kb on + strandat 1451.799 kb on + strandat 1451.800 kb on - strandat 1451.800 kb on - strandat 1451.857 kb on + strandat 1451.857 kb on + strandat 1451.858 kb on - strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.914 kb on + strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1451.915 kb on - strandat 1452.043 kb on - strandat 1452.076 kb on + strandat 1452.076 kb on + strandat 1452.076 kb on + strandat 1452.076 kb on + strandat 1452.077 kb on - strandat 1452.077 kb on - strandat 1452.083 kb on + strandat 1452.084 kb on - strandat 1452.084 kb on - strandat 1452.102 kb on + strandat 1453.573 kb on + strandat 1453.573 kb on + strandat 1453.573 kb on + strandat 1453.573 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.604 kb on + strandat 1453.675 kb on + strand, within QEN71_RS06545at 1453.675 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1453.869 kb on + strand, within QEN71_RS06545at 1454.331 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strandat 1454.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,451,149 + QEN71_RS06535 0.31 +0.2
1,451,286 + QEN71_RS06535 0.45 +0.1
1,451,287 - QEN71_RS06535 0.45 +0.1
1,451,287 - QEN71_RS06535 0.45 -0.2
1,451,580 + QEN71_RS06535 0.75 -0.0
1,451,580 + QEN71_RS06535 0.75 +0.5
1,451,580 + QEN71_RS06535 0.75 -0.4
1,451,580 + QEN71_RS06535 0.75 +2.8
1,451,580 + QEN71_RS06535 0.75 -0.1
1,451,580 + QEN71_RS06535 0.75 -0.5
1,451,580 + QEN71_RS06535 0.75 +0.1
1,451,580 + QEN71_RS06535 0.75 +1.0
1,451,580 + QEN71_RS06535 0.75 +0.0
1,451,580 + QEN71_RS06535 0.75 -0.3
1,451,580 + QEN71_RS06535 0.75 -0.6
1,451,581 - QEN71_RS06535 0.76 -0.8
1,451,581 - QEN71_RS06535 0.76 +0.6
1,451,581 - QEN71_RS06535 0.76 +0.6
1,451,581 - QEN71_RS06535 0.76 -0.3
1,451,581 - QEN71_RS06535 0.76 +0.7
1,451,581 - QEN71_RS06535 0.76 +0.2
1,451,581 - QEN71_RS06535 0.76 +0.3
1,451,581 - QEN71_RS06535 0.76 +0.0
1,451,583 + QEN71_RS06535 0.76 +1.1
1,451,583 + QEN71_RS06535 0.76 -2.1
1,451,583 + QEN71_RS06535 0.76 -0.2
1,451,583 + QEN71_RS06535 0.76 -0.7
1,451,583 + QEN71_RS06535 0.76 -1.0
1,451,583 + QEN71_RS06535 0.76 +0.0
1,451,583 + QEN71_RS06535 0.76 -1.7
1,451,583 + QEN71_RS06535 0.76 -0.4
1,451,584 - QEN71_RS06535 0.76 +0.2
1,451,584 - QEN71_RS06535 0.76 -0.9
1,451,584 - QEN71_RS06535 0.76 -0.8
1,451,584 - QEN71_RS06535 0.76 +1.6
1,451,584 - QEN71_RS06535 0.76 -0.8
1,451,584 - QEN71_RS06535 0.76 -0.1
1,451,584 - QEN71_RS06535 0.76 -0.3
1,451,697 + QEN71_RS06535 0.87 -1.6
1,451,697 + QEN71_RS06535 0.87 +0.3
1,451,697 + QEN71_RS06535 0.87 +0.1
1,451,697 + QEN71_RS06535 0.87 -0.3
1,451,697 + QEN71_RS06535 0.87 +0.6
1,451,697 + QEN71_RS06535 0.87 -1.6
1,451,698 - QEN71_RS06535 0.88 -0.2
1,451,698 - QEN71_RS06535 0.88 -1.4
1,451,698 - QEN71_RS06535 0.88 -0.0
1,451,698 - QEN71_RS06535 0.88 -0.0
1,451,698 - QEN71_RS06535 0.88 +0.6
1,451,698 - QEN71_RS06535 0.88 +0.6
1,451,698 - QEN71_RS06535 0.88 -1.3
1,451,698 - QEN71_RS06535 0.88 +0.7
1,451,698 - QEN71_RS06535 0.88 +0.2
1,451,698 - QEN71_RS06535 0.88 +0.5
1,451,698 - QEN71_RS06535 0.88 +1.5
1,451,698 - QEN71_RS06535 0.88 -0.0
1,451,706 + QEN71_RS06535 0.88 -0.8
1,451,706 + QEN71_RS06535 0.88 -0.9
1,451,706 + QEN71_RS06535 0.88 +0.1
1,451,706 + QEN71_RS06535 0.88 -0.9
1,451,707 - QEN71_RS06535 0.89 +0.4
1,451,707 - QEN71_RS06535 0.89 -2.0
1,451,707 - QEN71_RS06535 0.89 +0.9
1,451,707 - QEN71_RS06535 0.89 +0.1
1,451,707 - QEN71_RS06535 0.89 -0.8
1,451,707 - QEN71_RS06535 0.89 +0.2
1,451,777 + +0.5
1,451,799 + +0.6
1,451,799 + -0.1
1,451,799 + -0.4
1,451,799 + -0.5
1,451,800 - -0.2
1,451,800 - -0.2
1,451,857 + +2.0
1,451,857 + +0.5
1,451,858 - -0.4
1,451,914 + +0.2
1,451,914 + -0.4
1,451,914 + -0.2
1,451,914 + +0.4
1,451,914 + +0.2
1,451,915 - -0.2
1,451,915 - -0.4
1,451,915 - +0.5
1,451,915 - +0.1
1,451,915 - +0.1
1,451,915 - -0.2
1,452,043 - -0.6
1,452,076 + -0.7
1,452,076 + -0.5
1,452,076 + -0.6
1,452,076 + -0.3
1,452,077 - +1.7
1,452,077 - -0.2
1,452,083 + +0.2
1,452,084 - +0.1
1,452,084 - -0.9
1,452,102 + +0.5
1,453,573 + +1.5
1,453,573 + -0.3
1,453,573 + +0.3
1,453,573 + +0.2
1,453,604 + -0.4
1,453,604 + -1.9
1,453,604 + -0.0
1,453,604 + +1.4
1,453,604 + -0.6
1,453,675 + QEN71_RS06545 0.11 -1.4
1,453,675 + QEN71_RS06545 0.11 -0.6
1,453,869 + QEN71_RS06545 0.35 +0.2
1,453,869 + QEN71_RS06545 0.35 -0.8
1,453,869 + QEN71_RS06545 0.35 +0.1
1,453,869 + QEN71_RS06545 0.35 -0.1
1,453,869 + QEN71_RS06545 0.35 -0.7
1,453,869 + QEN71_RS06545 0.35 +0.6
1,453,869 + QEN71_RS06545 0.35 -0.2
1,454,331 + +0.2
1,454,549 + +1.2
1,454,549 + -0.8
1,454,549 + -0.2
1,454,549 + +0.1
1,454,549 + +0.4

Or see this region's nucleotide sequence