Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04905

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04895 and QEN71_RS04900 overlap by 4 nucleotidesQEN71_RS04900 and QEN71_RS04905 are separated by 676 nucleotidesQEN71_RS04905 and QEN71_RS04910 are separated by 207 nucleotides QEN71_RS04895: QEN71_RS04895 - MATE family efflux transporter, at 1,068,932 to 1,070,320 _RS04895 QEN71_RS04900: QEN71_RS04900 - DUF2288 domain-containing protein, at 1,070,317 to 1,070,625 _RS04900 QEN71_RS04905: QEN71_RS04905 - hypothetical protein, at 1,071,302 to 1,071,631 _RS04905 QEN71_RS04910: QEN71_RS04910 - peptidoglycan DD-metalloendopeptidase family protein, at 1,071,839 to 1,072,552 _RS04910 Position (kb) 1071 1072Strain fitness (log2 ratio) -2 -1 0 1 2at 1070.591 kb on + strand, within QEN71_RS04900at 1070.631 kb on + strandat 1070.658 kb on + strandat 1070.658 kb on + strandat 1070.659 kb on - strandat 1070.659 kb on - strandat 1070.659 kb on - strandat 1070.662 kb on + strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.663 kb on - strandat 1070.664 kb on + strandat 1070.665 kb on - strandat 1070.671 kb on + strandat 1070.671 kb on + strandat 1070.671 kb on + strandat 1070.671 kb on + strandat 1070.707 kb on + strandat 1070.707 kb on + strandat 1070.708 kb on - strandat 1070.708 kb on - strandat 1070.708 kb on - strandat 1070.708 kb on - strandat 1070.751 kb on + strandat 1070.773 kb on + strandat 1070.774 kb on - strandat 1070.782 kb on + strandat 1070.782 kb on + strandat 1070.797 kb on + strandat 1070.808 kb on + strandat 1070.808 kb on + strandat 1070.808 kb on + strandat 1070.808 kb on + strandat 1070.809 kb on - strandat 1070.832 kb on - strandat 1070.932 kb on + strandat 1070.932 kb on + strandat 1070.932 kb on + strandat 1070.933 kb on - strandat 1070.933 kb on - strandat 1070.933 kb on - strandat 1070.933 kb on - strandat 1070.934 kb on + strandat 1070.934 kb on + strandat 1070.934 kb on + strandat 1070.934 kb on + strandat 1071.017 kb on + strandat 1071.018 kb on - strandat 1071.018 kb on - strandat 1071.018 kb on - strandat 1071.019 kb on + strandat 1071.121 kb on + strandat 1071.121 kb on + strandat 1071.121 kb on + strandat 1071.122 kb on - strandat 1071.122 kb on - strandat 1071.122 kb on - strandat 1071.122 kb on - strandat 1071.133 kb on + strandat 1071.133 kb on + strandat 1071.133 kb on + strandat 1071.134 kb on - strandat 1071.134 kb on - strandat 1071.149 kb on + strandat 1071.150 kb on - strandat 1071.150 kb on - strandat 1071.151 kb on + strandat 1071.152 kb on - strandat 1071.163 kb on + strandat 1071.163 kb on + strandat 1071.164 kb on - strandat 1071.263 kb on + strandat 1071.264 kb on - strandat 1071.264 kb on - strandat 1071.303 kb on + strandat 1071.303 kb on + strandat 1071.303 kb on + strandat 1071.325 kb on + strandat 1071.325 kb on + strandat 1071.325 kb on + strandat 1071.325 kb on + strandat 1071.326 kb on - strandat 1071.326 kb on - strandat 1071.326 kb on - strandat 1071.326 kb on - strandat 1071.326 kb on - strandat 1071.326 kb on - strandat 1071.450 kb on + strand, within QEN71_RS04905at 1071.450 kb on + strand, within QEN71_RS04905at 1071.450 kb on + strand, within QEN71_RS04905at 1071.450 kb on + strand, within QEN71_RS04905at 1071.450 kb on + strand, within QEN71_RS04905at 1071.450 kb on + strand, within QEN71_RS04905at 1071.450 kb on + strand, within QEN71_RS04905at 1071.451 kb on - strand, within QEN71_RS04905at 1071.451 kb on - strand, within QEN71_RS04905at 1071.451 kb on - strand, within QEN71_RS04905at 1071.525 kb on + strand, within QEN71_RS04905at 1071.525 kb on + strand, within QEN71_RS04905at 1071.525 kb on + strand, within QEN71_RS04905at 1071.526 kb on - strand, within QEN71_RS04905at 1071.526 kb on - strand, within QEN71_RS04905at 1071.526 kb on - strand, within QEN71_RS04905at 1071.625 kb on - strandat 1071.625 kb on - strandat 1071.625 kb on - strandat 1071.660 kb on + strandat 1071.660 kb on + strandat 1071.753 kb on + strandat 1071.810 kb on + strandat 1071.886 kb on - strandat 1072.003 kb on - strand, within QEN71_RS04910at 1072.074 kb on + strand, within QEN71_RS04910at 1072.075 kb on - strand, within QEN71_RS04910at 1072.075 kb on - strand, within QEN71_RS04910at 1072.226 kb on - strand, within QEN71_RS04910at 1072.404 kb on - strand, within QEN71_RS04910at 1072.421 kb on - strand, within QEN71_RS04910at 1072.434 kb on + strand, within QEN71_RS04910at 1072.434 kb on + strand, within QEN71_RS04910at 1072.434 kb on + strand, within QEN71_RS04910at 1072.434 kb on + strand, within QEN71_RS04910at 1072.435 kb on - strand, within QEN71_RS04910at 1072.435 kb on - strand, within QEN71_RS04910at 1072.435 kb on - strand, within QEN71_RS04910at 1072.435 kb on - strand, within QEN71_RS04910at 1072.435 kb on - strand, within QEN71_RS04910at 1072.461 kb on + strand, within QEN71_RS04910at 1072.461 kb on + strand, within QEN71_RS04910at 1072.475 kb on + strand, within QEN71_RS04910at 1072.475 kb on + strand, within QEN71_RS04910at 1072.475 kb on + strand, within QEN71_RS04910at 1072.475 kb on + strand, within QEN71_RS04910at 1072.476 kb on - strand, within QEN71_RS04910at 1072.476 kb on - strand, within QEN71_RS04910at 1072.476 kb on - strand, within QEN71_RS04910

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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1,070,591 + QEN71_RS04900 0.89 +1.5
1,070,631 + +0.6
1,070,658 + -0.5
1,070,658 + +1.2
1,070,659 - +0.5
1,070,659 - -0.8
1,070,659 - +1.8
1,070,662 + -1.4
1,070,663 - -0.7
1,070,663 - +0.3
1,070,663 - -0.7
1,070,663 - -1.0
1,070,663 - +0.1
1,070,663 - +1.0
1,070,663 - +0.5
1,070,663 - +0.6
1,070,663 - +0.5
1,070,664 + +0.7
1,070,665 - +0.0
1,070,671 + -0.4
1,070,671 + -0.5
1,070,671 + +1.0
1,070,671 + +0.0
1,070,707 + +0.2
1,070,707 + -0.6
1,070,708 - +1.0
1,070,708 - +0.4
1,070,708 - +0.7
1,070,708 - -1.7
1,070,751 + -1.8
1,070,773 + -0.6
1,070,774 - -0.1
1,070,782 + +0.2
1,070,782 + -0.1
1,070,797 + +1.0
1,070,808 + +1.0
1,070,808 + +0.8
1,070,808 + -0.6
1,070,808 + -0.1
1,070,809 - -0.2
1,070,832 - +0.2
1,070,932 + -0.4
1,070,932 + -0.1
1,070,932 + -0.8
1,070,933 - +1.0
1,070,933 - +2.0
1,070,933 - -0.5
1,070,933 - -0.4
1,070,934 + +1.1
1,070,934 + -0.4
1,070,934 + -0.4
1,070,934 + +0.3
1,071,017 + -0.1
1,071,018 - -0.3
1,071,018 - -0.6
1,071,018 - +0.7
1,071,019 + -2.1
1,071,121 + -1.2
1,071,121 + -0.2
1,071,121 + -0.3
1,071,122 - -1.0
1,071,122 - -1.1
1,071,122 - +0.4
1,071,122 - -0.5
1,071,133 + -0.9
1,071,133 + -0.3
1,071,133 + -0.0
1,071,134 - +0.2
1,071,134 - +1.3
1,071,149 + -0.7
1,071,150 - +0.3
1,071,150 - -0.0
1,071,151 + +0.2
1,071,152 - -0.9
1,071,163 + -0.4
1,071,163 + +1.7
1,071,164 - -2.1
1,071,263 + -0.0
1,071,264 - +0.4
1,071,264 - +0.6
1,071,303 + +0.4
1,071,303 + +0.0
1,071,303 + +0.7
1,071,325 + -1.4
1,071,325 + +0.4
1,071,325 + -1.5
1,071,325 + +1.1
1,071,326 - -0.4
1,071,326 - -0.9
1,071,326 - -0.4
1,071,326 - -0.0
1,071,326 - +0.6
1,071,326 - +0.7
1,071,450 + QEN71_RS04905 0.45 -0.4
1,071,450 + QEN71_RS04905 0.45 -0.4
1,071,450 + QEN71_RS04905 0.45 -0.9
1,071,450 + QEN71_RS04905 0.45 +0.1
1,071,450 + QEN71_RS04905 0.45 -0.3
1,071,450 + QEN71_RS04905 0.45 +0.7
1,071,450 + QEN71_RS04905 0.45 +1.0
1,071,451 - QEN71_RS04905 0.45 +1.1
1,071,451 - QEN71_RS04905 0.45 -0.0
1,071,451 - QEN71_RS04905 0.45 +0.8
1,071,525 + QEN71_RS04905 0.68 +2.0
1,071,525 + QEN71_RS04905 0.68 +0.4
1,071,525 + QEN71_RS04905 0.68 +1.4
1,071,526 - QEN71_RS04905 0.68 +0.6
1,071,526 - QEN71_RS04905 0.68 -2.7
1,071,526 - QEN71_RS04905 0.68 -1.7
1,071,625 - +0.0
1,071,625 - +0.4
1,071,625 - +0.0
1,071,660 + +1.3
1,071,660 + +0.2
1,071,753 + +0.1
1,071,810 + -0.0
1,071,886 - +0.2
1,072,003 - QEN71_RS04910 0.23 -1.1
1,072,074 + QEN71_RS04910 0.33 -1.0
1,072,075 - QEN71_RS04910 0.33 -0.9
1,072,075 - QEN71_RS04910 0.33 -0.3
1,072,226 - QEN71_RS04910 0.54 -1.6
1,072,404 - QEN71_RS04910 0.79 -1.0
1,072,421 - QEN71_RS04910 0.82 +0.5
1,072,434 + QEN71_RS04910 0.83 -0.7
1,072,434 + QEN71_RS04910 0.83 -1.0
1,072,434 + QEN71_RS04910 0.83 +2.2
1,072,434 + QEN71_RS04910 0.83 -1.0
1,072,435 - QEN71_RS04910 0.83 -0.5
1,072,435 - QEN71_RS04910 0.83 +0.0
1,072,435 - QEN71_RS04910 0.83 -0.1
1,072,435 - QEN71_RS04910 0.83 -1.2
1,072,435 - QEN71_RS04910 0.83 +0.2
1,072,461 + QEN71_RS04910 0.87 -0.5
1,072,461 + QEN71_RS04910 0.87 +1.6
1,072,475 + QEN71_RS04910 0.89 -0.3
1,072,475 + QEN71_RS04910 0.89 -0.2
1,072,475 + QEN71_RS04910 0.89 -1.7
1,072,475 + QEN71_RS04910 0.89 -1.2
1,072,476 - QEN71_RS04910 0.89 +1.0
1,072,476 - QEN71_RS04910 0.89 +0.2
1,072,476 - QEN71_RS04910 0.89 -0.0

Or see this region's nucleotide sequence