Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02615

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02610 and QEN71_RS02615 are separated by 252 nucleotidesQEN71_RS02615 and QEN71_RS02620 overlap by 6 nucleotides QEN71_RS02610: QEN71_RS02610 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 584,143 to 585,252 _RS02610 QEN71_RS02615: QEN71_RS02615 - tetratricopeptide repeat protein, at 585,505 to 587,286 _RS02615 QEN71_RS02620: QEN71_RS02620 - sugar-binding transcriptional regulator, at 587,281 to 588,252 _RS02620 Position (kb) 585 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.708 kb on - strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.806 kb on + strand, within QEN71_RS02610at 584.807 kb on - strand, within QEN71_RS02610at 584.807 kb on - strand, within QEN71_RS02610at 584.807 kb on - strand, within QEN71_RS02610at 585.025 kb on + strand, within QEN71_RS02610at 585.026 kb on - strand, within QEN71_RS02610at 585.076 kb on + strand, within QEN71_RS02610at 585.077 kb on - strand, within QEN71_RS02610at 585.077 kb on - strand, within QEN71_RS02610at 585.083 kb on - strand, within QEN71_RS02610at 585.311 kb on + strandat 585.312 kb on - strandat 585.312 kb on - strandat 585.335 kb on + strandat 585.348 kb on + strandat 585.525 kb on + strandat 585.525 kb on + strandat 585.526 kb on - strandat 585.526 kb on - strandat 585.526 kb on - strandat 585.526 kb on - strandat 585.658 kb on + strandat 585.658 kb on + strandat 585.658 kb on + strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.659 kb on - strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.676 kb on + strandat 585.677 kb on - strandat 585.677 kb on - strandat 586.022 kb on - strand, within QEN71_RS02615at 586.022 kb on - strand, within QEN71_RS02615at 586.053 kb on + strand, within QEN71_RS02615at 586.053 kb on + strand, within QEN71_RS02615at 586.053 kb on + strand, within QEN71_RS02615at 586.054 kb on - strand, within QEN71_RS02615at 586.120 kb on + strand, within QEN71_RS02615at 586.120 kb on + strand, within QEN71_RS02615at 586.121 kb on - strand, within QEN71_RS02615at 586.226 kb on - strand, within QEN71_RS02615at 586.226 kb on - strand, within QEN71_RS02615at 586.226 kb on - strand, within QEN71_RS02615at 586.269 kb on + strand, within QEN71_RS02615at 586.269 kb on + strand, within QEN71_RS02615at 586.270 kb on - strand, within QEN71_RS02615at 586.306 kb on + strand, within QEN71_RS02615at 586.358 kb on + strand, within QEN71_RS02615at 586.358 kb on + strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.359 kb on - strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.369 kb on + strand, within QEN71_RS02615at 586.370 kb on - strand, within QEN71_RS02615at 586.370 kb on - strand, within QEN71_RS02615at 586.383 kb on + strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.384 kb on - strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.426 kb on + strand, within QEN71_RS02615at 586.427 kb on - strand, within QEN71_RS02615at 586.427 kb on - strand, within QEN71_RS02615at 586.427 kb on - strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.429 kb on + strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.430 kb on - strand, within QEN71_RS02615at 586.662 kb on - strand, within QEN71_RS02615at 586.662 kb on - strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.702 kb on + strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.703 kb on - strand, within QEN71_RS02615at 586.705 kb on + strand, within QEN71_RS02615at 586.705 kb on + strand, within QEN71_RS02615at 586.706 kb on - strand, within QEN71_RS02615at 586.706 kb on - strand, within QEN71_RS02615at 586.706 kb on - strand, within QEN71_RS02615at 586.768 kb on + strand, within QEN71_RS02615at 586.768 kb on + strand, within QEN71_RS02615at 586.768 kb on + strand, within QEN71_RS02615at 586.769 kb on - strand, within QEN71_RS02615at 586.769 kb on - strand, within QEN71_RS02615at 586.769 kb on - strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.876 kb on + strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.877 kb on - strand, within QEN71_RS02615at 586.888 kb on + strand, within QEN71_RS02615at 586.888 kb on + strand, within QEN71_RS02615at 586.889 kb on - strand, within QEN71_RS02615at 587.083 kb on - strand, within QEN71_RS02615at 587.083 kb on - strand, within QEN71_RS02615at 587.091 kb on + strand, within QEN71_RS02615at 587.091 kb on + strand, within QEN71_RS02615at 587.091 kb on + strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.092 kb on - strand, within QEN71_RS02615at 587.229 kb on - strandat 587.282 kb on + strandat 587.282 kb on + strandat 587.282 kb on + strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.283 kb on - strandat 587.284 kb on + strandat 587.284 kb on + strandat 587.285 kb on - strandat 587.285 kb on - strandat 587.285 kb on - strandat 587.285 kb on - strandat 587.611 kb on - strand, within QEN71_RS02620at 587.784 kb on - strand, within QEN71_RS02620at 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.197 kb on + strandat 588.198 kb on - strandat 588.198 kb on - strandat 588.200 kb on + strandat 588.201 kb on - strandat 588.201 kb on - strandat 588.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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584,708 - QEN71_RS02610 0.51 +0.2
584,708 - QEN71_RS02610 0.51 +0.6
584,708 - QEN71_RS02610 0.51 -1.4
584,708 - QEN71_RS02610 0.51 +0.1
584,708 - QEN71_RS02610 0.51 +0.0
584,708 - QEN71_RS02610 0.51 +1.0
584,806 + QEN71_RS02610 0.60 -0.9
584,806 + QEN71_RS02610 0.60 +0.2
584,806 + QEN71_RS02610 0.60 -0.9
584,806 + QEN71_RS02610 0.60 +0.0
584,806 + QEN71_RS02610 0.60 +0.1
584,806 + QEN71_RS02610 0.60 -0.4
584,807 - QEN71_RS02610 0.60 +0.8
584,807 - QEN71_RS02610 0.60 +0.2
584,807 - QEN71_RS02610 0.60 +0.3
585,025 + QEN71_RS02610 0.79 -0.3
585,026 - QEN71_RS02610 0.80 -0.2
585,076 + QEN71_RS02610 0.84 +0.2
585,077 - QEN71_RS02610 0.84 +1.6
585,077 - QEN71_RS02610 0.84 +1.2
585,083 - QEN71_RS02610 0.85 +0.4
585,311 + -0.0
585,312 - -0.4
585,312 - +1.1
585,335 + -0.1
585,348 + +0.0
585,525 + +0.3
585,525 + -0.3
585,526 - +0.9
585,526 - +0.6
585,526 - -0.9
585,526 - +0.1
585,658 + +0.0
585,658 + -0.9
585,658 + -0.4
585,659 - -0.8
585,659 - -0.3
585,659 - -0.5
585,659 - -0.4
585,659 - -0.0
585,659 - -1.3
585,659 - -1.0
585,676 + +0.9
585,676 + +0.1
585,676 + +0.8
585,676 + +1.0
585,676 + +0.4
585,677 - +1.3
585,677 - +0.5
586,022 - QEN71_RS02615 0.29 -0.2
586,022 - QEN71_RS02615 0.29 -0.3
586,053 + QEN71_RS02615 0.31 -1.0
586,053 + QEN71_RS02615 0.31 -0.1
586,053 + QEN71_RS02615 0.31 -0.9
586,054 - QEN71_RS02615 0.31 -0.8
586,120 + QEN71_RS02615 0.35 -0.2
586,120 + QEN71_RS02615 0.35 +0.3
586,121 - QEN71_RS02615 0.35 -0.3
586,226 - QEN71_RS02615 0.40 -0.8
586,226 - QEN71_RS02615 0.40 -0.9
586,226 - QEN71_RS02615 0.40 -0.7
586,269 + QEN71_RS02615 0.43 -0.3
586,269 + QEN71_RS02615 0.43 -0.9
586,270 - QEN71_RS02615 0.43 +0.8
586,306 + QEN71_RS02615 0.45 +0.7
586,358 + QEN71_RS02615 0.48 +1.0
586,358 + QEN71_RS02615 0.48 -0.5
586,359 - QEN71_RS02615 0.48 -0.9
586,359 - QEN71_RS02615 0.48 +0.4
586,359 - QEN71_RS02615 0.48 +0.6
586,359 - QEN71_RS02615 0.48 -0.4
586,369 + QEN71_RS02615 0.48 +0.0
586,369 + QEN71_RS02615 0.48 -1.0
586,369 + QEN71_RS02615 0.48 +1.1
586,369 + QEN71_RS02615 0.48 -2.0
586,369 + QEN71_RS02615 0.48 -0.3
586,369 + QEN71_RS02615 0.48 +0.6
586,369 + QEN71_RS02615 0.48 +0.2
586,370 - QEN71_RS02615 0.49 +0.3
586,370 - QEN71_RS02615 0.49 -1.3
586,383 + QEN71_RS02615 0.49 -0.2
586,384 - QEN71_RS02615 0.49 +1.2
586,384 - QEN71_RS02615 0.49 +0.6
586,384 - QEN71_RS02615 0.49 +0.1
586,384 - QEN71_RS02615 0.49 -0.1
586,384 - QEN71_RS02615 0.49 -0.1
586,384 - QEN71_RS02615 0.49 +0.2
586,384 - QEN71_RS02615 0.49 +0.3
586,426 + QEN71_RS02615 0.52 +0.0
586,426 + QEN71_RS02615 0.52 +0.3
586,426 + QEN71_RS02615 0.52 -0.3
586,426 + QEN71_RS02615 0.52 +0.1
586,427 - QEN71_RS02615 0.52 -1.0
586,427 - QEN71_RS02615 0.52 -0.4
586,427 - QEN71_RS02615 0.52 -1.0
586,429 + QEN71_RS02615 0.52 -1.3
586,429 + QEN71_RS02615 0.52 +0.2
586,429 + QEN71_RS02615 0.52 +0.2
586,429 + QEN71_RS02615 0.52 -0.1
586,429 + QEN71_RS02615 0.52 -1.1
586,429 + QEN71_RS02615 0.52 +0.0
586,429 + QEN71_RS02615 0.52 +1.2
586,430 - QEN71_RS02615 0.52 +2.0
586,430 - QEN71_RS02615 0.52 +0.2
586,430 - QEN71_RS02615 0.52 +1.2
586,430 - QEN71_RS02615 0.52 +0.3
586,430 - QEN71_RS02615 0.52 -0.7
586,430 - QEN71_RS02615 0.52 +2.4
586,662 - QEN71_RS02615 0.65 +0.4
586,662 - QEN71_RS02615 0.65 -0.2
586,702 + QEN71_RS02615 0.67 +0.4
586,702 + QEN71_RS02615 0.67 -0.4
586,702 + QEN71_RS02615 0.67 +2.3
586,702 + QEN71_RS02615 0.67 +0.3
586,702 + QEN71_RS02615 0.67 +0.8
586,703 - QEN71_RS02615 0.67 -1.3
586,703 - QEN71_RS02615 0.67 +0.5
586,703 - QEN71_RS02615 0.67 +0.3
586,703 - QEN71_RS02615 0.67 -0.4
586,703 - QEN71_RS02615 0.67 +1.2
586,703 - QEN71_RS02615 0.67 -0.5
586,703 - QEN71_RS02615 0.67 -0.6
586,703 - QEN71_RS02615 0.67 -0.8
586,705 + QEN71_RS02615 0.67 -0.8
586,705 + QEN71_RS02615 0.67 +0.2
586,706 - QEN71_RS02615 0.67 +0.1
586,706 - QEN71_RS02615 0.67 +0.1
586,706 - QEN71_RS02615 0.67 +0.4
586,768 + QEN71_RS02615 0.71 -0.8
586,768 + QEN71_RS02615 0.71 +0.1
586,768 + QEN71_RS02615 0.71 +1.0
586,769 - QEN71_RS02615 0.71 +1.5
586,769 - QEN71_RS02615 0.71 -0.3
586,769 - QEN71_RS02615 0.71 +1.0
586,876 + QEN71_RS02615 0.77 +0.3
586,876 + QEN71_RS02615 0.77 -0.2
586,876 + QEN71_RS02615 0.77 -1.0
586,876 + QEN71_RS02615 0.77 -0.3
586,877 - QEN71_RS02615 0.77 +0.3
586,877 - QEN71_RS02615 0.77 +1.3
586,877 - QEN71_RS02615 0.77 -0.8
586,877 - QEN71_RS02615 0.77 -0.9
586,877 - QEN71_RS02615 0.77 +1.0
586,888 + QEN71_RS02615 0.78 +1.6
586,888 + QEN71_RS02615 0.78 +0.3
586,889 - QEN71_RS02615 0.78 +0.3
587,083 - QEN71_RS02615 0.89 +0.2
587,083 - QEN71_RS02615 0.89 +0.0
587,091 + QEN71_RS02615 0.89 -0.2
587,091 + QEN71_RS02615 0.89 +0.0
587,091 + QEN71_RS02615 0.89 +1.1
587,092 - QEN71_RS02615 0.89 +0.8
587,092 - QEN71_RS02615 0.89 +0.3
587,092 - QEN71_RS02615 0.89 +1.6
587,092 - QEN71_RS02615 0.89 -1.4
587,229 - -1.0
587,282 + -0.8
587,282 + +0.0
587,282 + +0.3
587,283 - -1.3
587,283 - -0.8
587,283 - +0.4
587,283 - -1.2
587,283 - -0.4
587,283 - -1.7
587,283 - -0.8
587,283 - -0.2
587,284 + -0.6
587,284 + +0.3
587,285 - -0.1
587,285 - +0.7
587,285 - -0.7
587,285 - +0.2
587,611 - QEN71_RS02620 0.34 -0.3
587,784 - QEN71_RS02620 0.52 +0.1
588,197 + +1.2
588,197 + +0.0
588,197 + -0.5
588,197 + +0.0
588,197 + -0.6
588,197 + -1.0
588,198 - +1.3
588,198 - -0.8
588,200 + +1.6
588,201 - -1.5
588,201 - -0.6
588,201 - -3.3

Or see this region's nucleotide sequence