Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02165

Experiment: Motility_inner_sample

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02160 and QEN71_RS02165 are separated by 15 nucleotidesQEN71_RS02165 and QEN71_RS02170 are separated by 227 nucleotides QEN71_RS02160: QEN71_RS02160 - glycine--tRNA ligase subunit beta, at 483,756 to 485,855 _RS02160 QEN71_RS02165: QEN71_RS02165 - glycine--tRNA ligase subunit alpha, at 485,871 to 486,878 _RS02165 QEN71_RS02170: QEN71_RS02170 - apolipoprotein N-acyltransferase, at 487,106 to 488,782 _RS02170 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1at 486.995 kb on - strandat 486.995 kb on - strandat 486.995 kb on - strandat 486.995 kb on - strandat 486.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample
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486,995 - -0.3
486,995 - +0.1
486,995 - +0.1
486,995 - -2.2
486,995 - +0.4

Or see this region's nucleotide sequence