Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39910

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39895 and QEN71_RS39900 are separated by 64 nucleotidesQEN71_RS39900 and QEN71_RS39905 overlap by 4 nucleotidesQEN71_RS39905 and QEN71_RS39910 are separated by 30 nucleotidesQEN71_RS39910 and QEN71_RS39915 are separated by 249 nucleotides QEN71_RS39895: QEN71_RS39895 - transposase DNA-binding-containing protein, at 23,815 to 24,657 _RS39895 QEN71_RS39900: QEN71_RS39900 - transposase, at 24,722 to 25,231 _RS39900 QEN71_RS39905: QEN71_RS39905 - IS66 family insertion sequence element accessory protein TnpB, at 25,228 to 25,572 _RS39905 QEN71_RS39910: QEN71_RS39910 - IS66 family transposase, at 25,603 to 27,153 _RS39910 QEN71_RS39915: QEN71_RS39915 - IS21-like element helper ATPase IstB, at 27,403 to 28,191 _RS39915 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 24.719 kb on + strandat 24.719 kb on + strandat 24.791 kb on - strand, within QEN71_RS39900at 24.845 kb on + strand, within QEN71_RS39900at 24.845 kb on + strand, within QEN71_RS39900at 24.845 kb on + strand, within QEN71_RS39900at 24.846 kb on - strand, within QEN71_RS39900at 24.847 kb on + strand, within QEN71_RS39900at 24.847 kb on + strand, within QEN71_RS39900at 24.847 kb on + strand, within QEN71_RS39900at 24.848 kb on - strand, within QEN71_RS39900at 24.943 kb on + strand, within QEN71_RS39900at 24.944 kb on - strand, within QEN71_RS39900at 24.980 kb on + strand, within QEN71_RS39900at 24.995 kb on + strand, within QEN71_RS39900at 24.995 kb on + strand, within QEN71_RS39900at 24.996 kb on - strand, within QEN71_RS39900at 24.996 kb on - strand, within QEN71_RS39900at 25.093 kb on + strand, within QEN71_RS39900at 25.094 kb on - strand, within QEN71_RS39900at 25.094 kb on - strand, within QEN71_RS39900at 25.119 kb on + strand, within QEN71_RS39900at 25.119 kb on + strand, within QEN71_RS39900at 25.119 kb on + strand, within QEN71_RS39900at 25.119 kb on + strand, within QEN71_RS39900at 25.119 kb on + strand, within QEN71_RS39900at 25.120 kb on - strand, within QEN71_RS39900at 25.196 kb on - strandat 25.196 kb on - strandat 25.570 kb on + strandat 25.570 kb on + strandat 25.708 kb on - strandat 25.708 kb on - strandat 26.102 kb on - strand, within QEN71_RS39910at 26.125 kb on - strand, within QEN71_RS39910at 26.144 kb on + strand, within QEN71_RS39910at 26.144 kb on + strand, within QEN71_RS39910at 26.144 kb on + strand, within QEN71_RS39910at 26.145 kb on - strand, within QEN71_RS39910at 26.181 kb on + strand, within QEN71_RS39910at 26.182 kb on - strand, within QEN71_RS39910at 26.298 kb on + strand, within QEN71_RS39910at 26.394 kb on + strand, within QEN71_RS39910at 26.394 kb on + strand, within QEN71_RS39910at 26.394 kb on + strand, within QEN71_RS39910at 26.394 kb on + strand, within QEN71_RS39910at 26.394 kb on + strand, within QEN71_RS39910at 26.394 kb on + strand, within QEN71_RS39910at 26.394 kb on + strand, within QEN71_RS39910at 26.395 kb on - strand, within QEN71_RS39910at 26.395 kb on - strand, within QEN71_RS39910at 26.547 kb on + strand, within QEN71_RS39910at 26.547 kb on + strand, within QEN71_RS39910at 26.548 kb on - strand, within QEN71_RS39910at 26.548 kb on - strand, within QEN71_RS39910at 26.548 kb on - strand, within QEN71_RS39910at 26.599 kb on - strand, within QEN71_RS39910at 26.605 kb on - strand, within QEN71_RS39910at 26.621 kb on + strand, within QEN71_RS39910at 26.621 kb on + strand, within QEN71_RS39910at 26.621 kb on + strand, within QEN71_RS39910at 26.621 kb on + strand, within QEN71_RS39910at 26.621 kb on + strand, within QEN71_RS39910at 26.622 kb on - strand, within QEN71_RS39910at 26.685 kb on + strand, within QEN71_RS39910at 26.686 kb on - strand, within QEN71_RS39910at 26.721 kb on - strand, within QEN71_RS39910at 26.721 kb on - strand, within QEN71_RS39910at 26.824 kb on + strand, within QEN71_RS39910at 26.825 kb on - strand, within QEN71_RS39910at 26.825 kb on - strand, within QEN71_RS39910at 26.825 kb on - strand, within QEN71_RS39910at 26.825 kb on - strand, within QEN71_RS39910at 26.857 kb on + strand, within QEN71_RS39910at 26.986 kb on + strand, within QEN71_RS39910at 26.987 kb on - strand, within QEN71_RS39910at 26.987 kb on - strand, within QEN71_RS39910at 26.987 kb on - strand, within QEN71_RS39910at 26.987 kb on - strand, within QEN71_RS39910at 26.987 kb on - strand, within QEN71_RS39910at 27.034 kb on + strandat 27.034 kb on + strandat 27.034 kb on + strandat 27.043 kb on + strandat 27.044 kb on - strandat 27.044 kb on - strandat 27.159 kb on - strandat 27.173 kb on + strandat 27.173 kb on + strandat 27.173 kb on + strandat 27.174 kb on - strandat 27.179 kb on + strandat 27.179 kb on + strandat 27.229 kb on + strandat 27.266 kb on - strandat 27.282 kb on - strandat 27.282 kb on - strandat 27.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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24,719 + -0.2
24,719 + +0.2
24,791 - QEN71_RS39900 0.14 -0.3
24,845 + QEN71_RS39900 0.24 -0.1
24,845 + QEN71_RS39900 0.24 -1.4
24,845 + QEN71_RS39900 0.24 -0.6
24,846 - QEN71_RS39900 0.24 -0.3
24,847 + QEN71_RS39900 0.25 -0.1
24,847 + QEN71_RS39900 0.25 +0.0
24,847 + QEN71_RS39900 0.25 +1.4
24,848 - QEN71_RS39900 0.25 -1.9
24,943 + QEN71_RS39900 0.43 -2.1
24,944 - QEN71_RS39900 0.44 +0.1
24,980 + QEN71_RS39900 0.51 -0.1
24,995 + QEN71_RS39900 0.54 -1.8
24,995 + QEN71_RS39900 0.54 -0.6
24,996 - QEN71_RS39900 0.54 -0.1
24,996 - QEN71_RS39900 0.54 -0.8
25,093 + QEN71_RS39900 0.73 -0.4
25,094 - QEN71_RS39900 0.73 +0.1
25,094 - QEN71_RS39900 0.73 +1.0
25,119 + QEN71_RS39900 0.78 -0.2
25,119 + QEN71_RS39900 0.78 +0.3
25,119 + QEN71_RS39900 0.78 -1.1
25,119 + QEN71_RS39900 0.78 -0.2
25,119 + QEN71_RS39900 0.78 -0.5
25,120 - QEN71_RS39900 0.78 -1.8
25,196 - +0.3
25,196 - +0.9
25,570 + -0.9
25,570 + -1.4
25,708 - +0.6
25,708 - +0.1
26,102 - QEN71_RS39910 0.32 -0.6
26,125 - QEN71_RS39910 0.34 -0.3
26,144 + QEN71_RS39910 0.35 +0.8
26,144 + QEN71_RS39910 0.35 -1.3
26,144 + QEN71_RS39910 0.35 -0.4
26,145 - QEN71_RS39910 0.35 -0.0
26,181 + QEN71_RS39910 0.37 -1.0
26,182 - QEN71_RS39910 0.37 +1.3
26,298 + QEN71_RS39910 0.45 -1.8
26,394 + QEN71_RS39910 0.51 -1.5
26,394 + QEN71_RS39910 0.51 -1.3
26,394 + QEN71_RS39910 0.51 +0.1
26,394 + QEN71_RS39910 0.51 -0.2
26,394 + QEN71_RS39910 0.51 -0.2
26,394 + QEN71_RS39910 0.51 +0.4
26,394 + QEN71_RS39910 0.51 -0.1
26,395 - QEN71_RS39910 0.51 +0.3
26,395 - QEN71_RS39910 0.51 +0.7
26,547 + QEN71_RS39910 0.61 -0.1
26,547 + QEN71_RS39910 0.61 +0.4
26,548 - QEN71_RS39910 0.61 -0.1
26,548 - QEN71_RS39910 0.61 +0.9
26,548 - QEN71_RS39910 0.61 -1.3
26,599 - QEN71_RS39910 0.64 -0.2
26,605 - QEN71_RS39910 0.65 +0.2
26,621 + QEN71_RS39910 0.66 -0.5
26,621 + QEN71_RS39910 0.66 +0.7
26,621 + QEN71_RS39910 0.66 +0.1
26,621 + QEN71_RS39910 0.66 +0.0
26,621 + QEN71_RS39910 0.66 -0.1
26,622 - QEN71_RS39910 0.66 +0.1
26,685 + QEN71_RS39910 0.70 +0.7
26,686 - QEN71_RS39910 0.70 -0.3
26,721 - QEN71_RS39910 0.72 -0.3
26,721 - QEN71_RS39910 0.72 +0.1
26,824 + QEN71_RS39910 0.79 -0.0
26,825 - QEN71_RS39910 0.79 -0.5
26,825 - QEN71_RS39910 0.79 +0.2
26,825 - QEN71_RS39910 0.79 -0.4
26,825 - QEN71_RS39910 0.79 -1.3
26,857 + QEN71_RS39910 0.81 -0.8
26,986 + QEN71_RS39910 0.89 -0.6
26,987 - QEN71_RS39910 0.89 +0.7
26,987 - QEN71_RS39910 0.89 -0.5
26,987 - QEN71_RS39910 0.89 -0.9
26,987 - QEN71_RS39910 0.89 -0.7
26,987 - QEN71_RS39910 0.89 +0.2
27,034 + +1.3
27,034 + -0.8
27,034 + +0.1
27,043 + -0.6
27,044 - -0.2
27,044 - -0.5
27,159 - -1.9
27,173 + -1.7
27,173 + -2.0
27,173 + -1.5
27,174 - +1.0
27,179 + -0.2
27,179 + +0.7
27,229 + -0.6
27,266 - -0.5
27,282 - -0.4
27,282 - +0.3
27,305 - +0.9

Or see this region's nucleotide sequence