Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS38850 and QEN71_RS38855 overlap by 4 nucleotides QEN71_RS38855 and QEN71_RS38860 are separated by 90 nucleotides QEN71_RS38860 and QEN71_RS38865 are separated by 264 nucleotides QEN71_RS38865 and QEN71_RS38870 are separated by 31 nucleotides
QEN71_RS38850: QEN71_RS38850 - NAD(P)H-dependent oxidoreductase, at 2,095,392 to 2,096,048
_RS38850
QEN71_RS38855: QEN71_RS38855 - GNAT family N-acetyltransferase, at 2,096,045 to 2,096,482
_RS38855
QEN71_RS38860: QEN71_RS38860 - PLP-dependent aminotransferase family protein, at 2,096,573 to 2,098,027
_RS38860
QEN71_RS38865: QEN71_RS38865 - Ohr family peroxiredoxin, at 2,098,292 to 2,098,807
_RS38865
QEN71_RS38870: QEN71_RS38870 - DUF3331 domain-containing protein, at 2,098,839 to 2,099,249
_RS38870
Position (kb)
2096
2097
2098
2099 Strain fitness (log2 ratio)
-1
0
1
2 at 2095.876 kb on + strand, within QEN71_RS38850 at 2095.877 kb on - strand, within QEN71_RS38850 at 2096.101 kb on - strand, within QEN71_RS38855 at 2096.101 kb on - strand, within QEN71_RS38855 at 2096.250 kb on + strand, within QEN71_RS38855 at 2096.251 kb on - strand, within QEN71_RS38855 at 2096.251 kb on - strand, within QEN71_RS38855 at 2096.251 kb on - strand, within QEN71_RS38855 at 2096.507 kb on + strand at 2096.508 kb on - strand at 2096.563 kb on - strand at 2096.643 kb on - strand at 2096.643 kb on - strand at 2096.643 kb on - strand at 2096.643 kb on - strand at 2096.760 kb on - strand, within QEN71_RS38860 at 2097.055 kb on + strand, within QEN71_RS38860 at 2097.055 kb on + strand, within QEN71_RS38860 at 2097.143 kb on + strand, within QEN71_RS38860 at 2097.509 kb on + strand, within QEN71_RS38860 at 2097.572 kb on + strand, within QEN71_RS38860 at 2097.573 kb on - strand, within QEN71_RS38860 at 2097.704 kb on - strand, within QEN71_RS38860 at 2097.828 kb on + strand, within QEN71_RS38860 at 2098.058 kb on - strand at 2098.223 kb on + strand at 2098.224 kb on - strand at 2098.334 kb on + strand at 2098.335 kb on - strand at 2098.335 kb on - strand at 2098.363 kb on + strand, within QEN71_RS38865 at 2098.363 kb on + strand, within QEN71_RS38865
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 2,095,876 + QEN71_RS38850 0.74 -0.2 2,095,877 - QEN71_RS38850 0.74 -0.1 2,096,101 - QEN71_RS38855 0.13 +0.1 2,096,101 - QEN71_RS38855 0.13 -0.1 2,096,250 + QEN71_RS38855 0.47 +0.0 2,096,251 - QEN71_RS38855 0.47 -0.8 2,096,251 - QEN71_RS38855 0.47 +0.1 2,096,251 - QEN71_RS38855 0.47 -0.2 2,096,507 + +0.1 2,096,508 - -0.8 2,096,563 - +0.4 2,096,643 - -0.7 2,096,643 - +0.2 2,096,643 - +0.0 2,096,643 - -0.9 2,096,760 - QEN71_RS38860 0.13 +0.5 2,097,055 + QEN71_RS38860 0.33 +0.8 2,097,055 + QEN71_RS38860 0.33 -0.2 2,097,143 + QEN71_RS38860 0.39 +0.1 2,097,509 + QEN71_RS38860 0.64 +0.0 2,097,572 + QEN71_RS38860 0.69 +0.0 2,097,573 - QEN71_RS38860 0.69 +0.7 2,097,704 - QEN71_RS38860 0.78 +0.2 2,097,828 + QEN71_RS38860 0.86 -0.2 2,098,058 - -0.2 2,098,223 + -1.3 2,098,224 - -0.1 2,098,334 + -1.5 2,098,335 - +1.8 2,098,335 - -0.3 2,098,363 + QEN71_RS38865 0.14 -0.8 2,098,363 + QEN71_RS38865 0.14 -0.9
Or see this region's nucleotide sequence