Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38860

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38850 and QEN71_RS38855 overlap by 4 nucleotidesQEN71_RS38855 and QEN71_RS38860 are separated by 90 nucleotidesQEN71_RS38860 and QEN71_RS38865 are separated by 264 nucleotidesQEN71_RS38865 and QEN71_RS38870 are separated by 31 nucleotides QEN71_RS38850: QEN71_RS38850 - NAD(P)H-dependent oxidoreductase, at 2,095,392 to 2,096,048 _RS38850 QEN71_RS38855: QEN71_RS38855 - GNAT family N-acetyltransferase, at 2,096,045 to 2,096,482 _RS38855 QEN71_RS38860: QEN71_RS38860 - PLP-dependent aminotransferase family protein, at 2,096,573 to 2,098,027 _RS38860 QEN71_RS38865: QEN71_RS38865 - Ohr family peroxiredoxin, at 2,098,292 to 2,098,807 _RS38865 QEN71_RS38870: QEN71_RS38870 - DUF3331 domain-containing protein, at 2,098,839 to 2,099,249 _RS38870 Position (kb) 2096 2097 2098 2099Strain fitness (log2 ratio) -1 0 1 2at 2095.876 kb on + strand, within QEN71_RS38850at 2095.877 kb on - strand, within QEN71_RS38850at 2096.101 kb on - strand, within QEN71_RS38855at 2096.101 kb on - strand, within QEN71_RS38855at 2096.250 kb on + strand, within QEN71_RS38855at 2096.251 kb on - strand, within QEN71_RS38855at 2096.251 kb on - strand, within QEN71_RS38855at 2096.251 kb on - strand, within QEN71_RS38855at 2096.507 kb on + strandat 2096.508 kb on - strandat 2096.563 kb on - strandat 2096.643 kb on - strandat 2096.643 kb on - strandat 2096.643 kb on - strandat 2096.643 kb on - strandat 2096.760 kb on - strand, within QEN71_RS38860at 2097.055 kb on + strand, within QEN71_RS38860at 2097.055 kb on + strand, within QEN71_RS38860at 2097.143 kb on + strand, within QEN71_RS38860at 2097.509 kb on + strand, within QEN71_RS38860at 2097.572 kb on + strand, within QEN71_RS38860at 2097.573 kb on - strand, within QEN71_RS38860at 2097.704 kb on - strand, within QEN71_RS38860at 2097.828 kb on + strand, within QEN71_RS38860at 2098.058 kb on - strandat 2098.223 kb on + strandat 2098.224 kb on - strandat 2098.334 kb on + strandat 2098.335 kb on - strandat 2098.335 kb on - strandat 2098.363 kb on + strand, within QEN71_RS38865at 2098.363 kb on + strand, within QEN71_RS38865

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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2,095,876 + QEN71_RS38850 0.74 -0.2
2,095,877 - QEN71_RS38850 0.74 -0.1
2,096,101 - QEN71_RS38855 0.13 +0.1
2,096,101 - QEN71_RS38855 0.13 -0.1
2,096,250 + QEN71_RS38855 0.47 +0.0
2,096,251 - QEN71_RS38855 0.47 -0.8
2,096,251 - QEN71_RS38855 0.47 +0.1
2,096,251 - QEN71_RS38855 0.47 -0.2
2,096,507 + +0.1
2,096,508 - -0.8
2,096,563 - +0.4
2,096,643 - -0.7
2,096,643 - +0.2
2,096,643 - +0.0
2,096,643 - -0.9
2,096,760 - QEN71_RS38860 0.13 +0.5
2,097,055 + QEN71_RS38860 0.33 +0.8
2,097,055 + QEN71_RS38860 0.33 -0.2
2,097,143 + QEN71_RS38860 0.39 +0.1
2,097,509 + QEN71_RS38860 0.64 +0.0
2,097,572 + QEN71_RS38860 0.69 +0.0
2,097,573 - QEN71_RS38860 0.69 +0.7
2,097,704 - QEN71_RS38860 0.78 +0.2
2,097,828 + QEN71_RS38860 0.86 -0.2
2,098,058 - -0.2
2,098,223 + -1.3
2,098,224 - -0.1
2,098,334 + -1.5
2,098,335 - +1.8
2,098,335 - -0.3
2,098,363 + QEN71_RS38865 0.14 -0.8
2,098,363 + QEN71_RS38865 0.14 -0.9

Or see this region's nucleotide sequence