Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS37615 and QEN71_RS37620 are separated by 75 nucleotides QEN71_RS37620 and QEN71_RS37625 are separated by 56 nucleotides QEN71_RS37625 and QEN71_RS37630 are separated by 74 nucleotides QEN71_RS37630 and QEN71_RS37635 overlap by 4 nucleotides
QEN71_RS37615: QEN71_RS37615 - DoxX family protein, at 1,809,389 to 1,809,886
_RS37615
QEN71_RS37620: QEN71_RS37620 - alpha/beta hydrolase, at 1,809,962 to 1,810,726
_RS37620
QEN71_RS37625: QEN71_RS37625 - hypothetical protein, at 1,810,783 to 1,811,052
_RS37625
QEN71_RS37630: QEN71_RS37630 - DUF692 domain-containing protein, at 1,811,127 to 1,812,005
_RS37630
QEN71_RS37635: QEN71_RS37635 - DNA-binding domain-containing protein, at 1,812,002 to 1,812,754
_RS37635
Position (kb) 1810
1811
1812 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1809.961 kb on + strand at 1809.961 kb on + strand at 1809.961 kb on + strand at 1809.961 kb on + strand at 1809.962 kb on - strand at 1809.962 kb on - strand at 1809.962 kb on - strand at 1809.962 kb on - strand at 1809.962 kb on - strand at 1810.054 kb on - strand, within QEN71_RS37620 at 1810.137 kb on - strand, within QEN71_RS37620 at 1810.137 kb on - strand, within QEN71_RS37620 at 1810.409 kb on + strand, within QEN71_RS37620 at 1810.526 kb on + strand, within QEN71_RS37620 at 1810.527 kb on - strand, within QEN71_RS37620 at 1810.527 kb on - strand, within QEN71_RS37620 at 1810.557 kb on - strand, within QEN71_RS37620 at 1810.613 kb on + strand, within QEN71_RS37620 at 1811.104 kb on + strand at 1811.104 kb on + strand at 1811.105 kb on - strand at 1811.106 kb on + strand at 1811.106 kb on + strand at 1811.107 kb on - strand at 1811.475 kb on + strand, within QEN71_RS37630 at 1811.568 kb on + strand, within QEN71_RS37630 at 1811.663 kb on + strand, within QEN71_RS37630 at 1811.664 kb on - strand, within QEN71_RS37630 at 1811.664 kb on - strand, within QEN71_RS37630 at 1811.664 kb on - strand, within QEN71_RS37630 at 1811.827 kb on - strand, within QEN71_RS37630 at 1811.943 kb on + strand at 1812.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 1,809,961 + -0.6 1,809,961 + +0.1 1,809,961 + -0.2 1,809,961 + -1.1 1,809,962 - +0.4 1,809,962 - +0.1 1,809,962 - -0.3 1,809,962 - -0.1 1,809,962 - +0.4 1,810,054 - QEN71_RS37620 0.12 -1.0 1,810,137 - QEN71_RS37620 0.23 -0.8 1,810,137 - QEN71_RS37620 0.23 -0.6 1,810,409 + QEN71_RS37620 0.58 -2.0 1,810,526 + QEN71_RS37620 0.74 -1.0 1,810,527 - QEN71_RS37620 0.74 -1.0 1,810,527 - QEN71_RS37620 0.74 +0.2 1,810,557 - QEN71_RS37620 0.78 -1.4 1,810,613 + QEN71_RS37620 0.85 -1.4 1,811,104 + +0.3 1,811,104 + -1.9 1,811,105 - +1.5 1,811,106 + +0.1 1,811,106 + -0.4 1,811,107 - +2.1 1,811,475 + QEN71_RS37630 0.40 +0.6 1,811,568 + QEN71_RS37630 0.50 +0.3 1,811,663 + QEN71_RS37630 0.61 +0.2 1,811,664 - QEN71_RS37630 0.61 +0.8 1,811,664 - QEN71_RS37630 0.61 +0.1 1,811,664 - QEN71_RS37630 0.61 +0.8 1,811,827 - QEN71_RS37630 0.80 -0.5 1,811,943 + -0.6 1,812,035 - -0.8
Or see this region's nucleotide sequence