Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS31840

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS31830 and QEN71_RS31835 are separated by 80 nucleotidesQEN71_RS31835 and QEN71_RS31840 are separated by 77 nucleotidesQEN71_RS31840 and QEN71_RS31845 are separated by 212 nucleotides QEN71_RS31830: QEN71_RS31830 - helix-turn-helix domain-containing GNAT family N-acetyltransferase, at 492,959 to 493,963 _RS31830 QEN71_RS31835: QEN71_RS31835 - thioredoxin family protein, at 494,044 to 494,595 _RS31835 QEN71_RS31840: QEN71_RS31840 - glucosidase, at 494,673 to 497,417 _RS31840 QEN71_RS31845: QEN71_RS31845 - pseudouridine-5'-phosphate glycosidase, at 497,630 to 498,556 _RS31845 Position (kb) 494 495 496 497 498Strain fitness (log2 ratio) -2 -1 0 1 2at 493.984 kb on + strandat 494.002 kb on + strandat 494.007 kb on + strandat 494.008 kb on - strandat 494.225 kb on + strand, within QEN71_RS31835at 494.288 kb on + strand, within QEN71_RS31835at 494.450 kb on + strand, within QEN71_RS31835at 494.451 kb on - strand, within QEN71_RS31835at 494.515 kb on - strand, within QEN71_RS31835at 494.515 kb on - strand, within QEN71_RS31835at 494.516 kb on + strand, within QEN71_RS31835at 494.517 kb on - strand, within QEN71_RS31835at 494.544 kb on + strandat 494.545 kb on - strandat 495.044 kb on - strand, within QEN71_RS31840at 495.046 kb on + strand, within QEN71_RS31840at 495.083 kb on - strand, within QEN71_RS31840at 495.199 kb on + strand, within QEN71_RS31840at 495.200 kb on - strand, within QEN71_RS31840at 495.489 kb on + strand, within QEN71_RS31840at 495.535 kb on + strand, within QEN71_RS31840at 495.535 kb on + strand, within QEN71_RS31840at 495.535 kb on + strand, within QEN71_RS31840at 495.536 kb on - strand, within QEN71_RS31840at 495.569 kb on + strand, within QEN71_RS31840at 495.569 kb on + strand, within QEN71_RS31840at 495.605 kb on + strand, within QEN71_RS31840at 495.607 kb on + strand, within QEN71_RS31840at 495.607 kb on + strand, within QEN71_RS31840at 495.608 kb on - strand, within QEN71_RS31840at 495.646 kb on + strand, within QEN71_RS31840at 495.646 kb on + strand, within QEN71_RS31840at 495.646 kb on + strand, within QEN71_RS31840at 495.647 kb on - strand, within QEN71_RS31840at 495.872 kb on + strand, within QEN71_RS31840at 495.873 kb on - strand, within QEN71_RS31840at 496.003 kb on - strand, within QEN71_RS31840at 496.024 kb on + strand, within QEN71_RS31840at 496.024 kb on + strand, within QEN71_RS31840at 496.024 kb on + strand, within QEN71_RS31840at 496.025 kb on - strand, within QEN71_RS31840at 496.025 kb on - strand, within QEN71_RS31840at 496.120 kb on + strand, within QEN71_RS31840at 496.121 kb on - strand, within QEN71_RS31840at 496.270 kb on + strand, within QEN71_RS31840at 496.270 kb on + strand, within QEN71_RS31840at 496.270 kb on + strand, within QEN71_RS31840at 496.284 kb on + strand, within QEN71_RS31840at 496.285 kb on - strand, within QEN71_RS31840at 496.358 kb on - strand, within QEN71_RS31840at 496.450 kb on + strand, within QEN71_RS31840at 496.450 kb on + strand, within QEN71_RS31840at 496.450 kb on + strand, within QEN71_RS31840at 496.450 kb on + strand, within QEN71_RS31840at 496.450 kb on + strand, within QEN71_RS31840at 496.450 kb on + strand, within QEN71_RS31840at 496.450 kb on + strand, within QEN71_RS31840at 496.549 kb on - strand, within QEN71_RS31840at 496.549 kb on - strand, within QEN71_RS31840at 496.549 kb on - strand, within QEN71_RS31840at 496.553 kb on - strand, within QEN71_RS31840at 496.553 kb on - strand, within QEN71_RS31840at 496.553 kb on - strand, within QEN71_RS31840at 496.553 kb on - strand, within QEN71_RS31840at 496.778 kb on + strand, within QEN71_RS31840at 496.879 kb on + strand, within QEN71_RS31840at 496.879 kb on + strand, within QEN71_RS31840at 497.012 kb on - strand, within QEN71_RS31840at 497.017 kb on + strand, within QEN71_RS31840at 497.017 kb on + strand, within QEN71_RS31840at 497.017 kb on + strand, within QEN71_RS31840at 497.018 kb on - strand, within QEN71_RS31840at 497.032 kb on + strand, within QEN71_RS31840at 497.032 kb on + strand, within QEN71_RS31840at 497.032 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.065 kb on + strand, within QEN71_RS31840at 497.066 kb on - strand, within QEN71_RS31840at 497.224 kb on + strandat 497.224 kb on + strandat 497.225 kb on - strandat 497.225 kb on - strandat 497.225 kb on - strandat 497.257 kb on + strandat 497.275 kb on + strandat 497.276 kb on - strandat 497.323 kb on + strandat 497.518 kb on + strandat 497.518 kb on + strandat 497.518 kb on + strandat 497.578 kb on - strandat 497.595 kb on + strandat 497.595 kb on + strandat 497.595 kb on + strandat 497.596 kb on - strandat 497.596 kb on - strandat 497.596 kb on - strandat 498.212 kb on + strand, within QEN71_RS31845at 498.212 kb on + strand, within QEN71_RS31845at 498.212 kb on + strand, within QEN71_RS31845at 498.213 kb on - strand, within QEN71_RS31845at 498.213 kb on - strand, within QEN71_RS31845at 498.213 kb on - strand, within QEN71_RS31845

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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493,984 + -1.0
494,002 + +0.3
494,007 + +0.4
494,008 - -0.6
494,225 + QEN71_RS31835 0.33 -0.8
494,288 + QEN71_RS31835 0.44 +0.5
494,450 + QEN71_RS31835 0.74 -1.0
494,451 - QEN71_RS31835 0.74 +1.8
494,515 - QEN71_RS31835 0.85 +0.1
494,515 - QEN71_RS31835 0.85 -0.6
494,516 + QEN71_RS31835 0.86 -1.6
494,517 - QEN71_RS31835 0.86 +0.2
494,544 + -0.6
494,545 - -1.4
495,044 - QEN71_RS31840 0.14 -0.1
495,046 + QEN71_RS31840 0.14 +1.6
495,083 - QEN71_RS31840 0.15 -1.2
495,199 + QEN71_RS31840 0.19 -0.8
495,200 - QEN71_RS31840 0.19 -0.8
495,489 + QEN71_RS31840 0.30 -0.5
495,535 + QEN71_RS31840 0.31 +1.1
495,535 + QEN71_RS31840 0.31 +0.4
495,535 + QEN71_RS31840 0.31 +0.9
495,536 - QEN71_RS31840 0.31 -0.7
495,569 + QEN71_RS31840 0.33 -0.2
495,569 + QEN71_RS31840 0.33 -0.4
495,605 + QEN71_RS31840 0.34 -0.2
495,607 + QEN71_RS31840 0.34 -0.1
495,607 + QEN71_RS31840 0.34 -1.1
495,608 - QEN71_RS31840 0.34 -1.0
495,646 + QEN71_RS31840 0.35 -0.9
495,646 + QEN71_RS31840 0.35 +0.5
495,646 + QEN71_RS31840 0.35 -0.1
495,647 - QEN71_RS31840 0.35 +0.8
495,872 + QEN71_RS31840 0.44 +0.2
495,873 - QEN71_RS31840 0.44 -0.2
496,003 - QEN71_RS31840 0.48 +0.0
496,024 + QEN71_RS31840 0.49 -0.0
496,024 + QEN71_RS31840 0.49 -0.9
496,024 + QEN71_RS31840 0.49 -1.1
496,025 - QEN71_RS31840 0.49 +0.9
496,025 - QEN71_RS31840 0.49 +0.9
496,120 + QEN71_RS31840 0.53 -0.2
496,121 - QEN71_RS31840 0.53 -0.0
496,270 + QEN71_RS31840 0.58 -0.1
496,270 + QEN71_RS31840 0.58 +0.6
496,270 + QEN71_RS31840 0.58 +1.2
496,284 + QEN71_RS31840 0.59 -0.5
496,285 - QEN71_RS31840 0.59 -1.4
496,358 - QEN71_RS31840 0.61 -0.2
496,450 + QEN71_RS31840 0.65 -0.3
496,450 + QEN71_RS31840 0.65 +0.3
496,450 + QEN71_RS31840 0.65 -0.3
496,450 + QEN71_RS31840 0.65 +0.1
496,450 + QEN71_RS31840 0.65 -0.2
496,450 + QEN71_RS31840 0.65 -0.7
496,450 + QEN71_RS31840 0.65 +0.1
496,549 - QEN71_RS31840 0.68 -0.0
496,549 - QEN71_RS31840 0.68 -1.4
496,549 - QEN71_RS31840 0.68 +1.0
496,553 - QEN71_RS31840 0.68 +0.4
496,553 - QEN71_RS31840 0.68 +0.4
496,553 - QEN71_RS31840 0.68 +0.7
496,553 - QEN71_RS31840 0.68 -0.5
496,778 + QEN71_RS31840 0.77 -0.1
496,879 + QEN71_RS31840 0.80 -0.4
496,879 + QEN71_RS31840 0.80 +0.5
497,012 - QEN71_RS31840 0.85 -0.3
497,017 + QEN71_RS31840 0.85 +0.1
497,017 + QEN71_RS31840 0.85 -0.6
497,017 + QEN71_RS31840 0.85 +1.2
497,018 - QEN71_RS31840 0.85 -0.4
497,032 + QEN71_RS31840 0.86 -0.3
497,032 + QEN71_RS31840 0.86 +0.8
497,032 + QEN71_RS31840 0.86 +0.2
497,065 + QEN71_RS31840 0.87 -1.1
497,065 + QEN71_RS31840 0.87 +0.4
497,065 + QEN71_RS31840 0.87 -0.5
497,065 + QEN71_RS31840 0.87 +0.8
497,066 - QEN71_RS31840 0.87 -0.2
497,224 + +0.4
497,224 + +1.8
497,225 - +0.2
497,225 - -0.0
497,225 - -0.3
497,257 + +0.1
497,275 + -0.3
497,276 - -0.8
497,323 + +0.1
497,518 + +0.6
497,518 + -2.0
497,518 + +0.3
497,578 - -0.2
497,595 + -0.4
497,595 + -1.5
497,595 + +1.8
497,596 - -2.1
497,596 - +0.0
497,596 - -0.4
498,212 + QEN71_RS31845 0.63 +0.1
498,212 + QEN71_RS31845 0.63 -0.7
498,212 + QEN71_RS31845 0.63 -1.1
498,213 - QEN71_RS31845 0.63 -0.0
498,213 - QEN71_RS31845 0.63 -1.9
498,213 - QEN71_RS31845 0.63 -0.3

Or see this region's nucleotide sequence