Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30515

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS30505 and QEN71_RS30510 are separated by 13 nucleotidesQEN71_RS30510 and QEN71_RS30515 are separated by 208 nucleotidesQEN71_RS30515 and QEN71_RS30520 are separated by 44 nucleotides QEN71_RS30505: QEN71_RS30505 - flagellar transcriptional regulator FlhD, at 184,571 to 184,891 _RS30505 QEN71_RS30510: QEN71_RS30510 - flagellar transcriptional regulator FlhC, at 184,905 to 185,561 _RS30510 QEN71_RS30515: QEN71_RS30515 - flagellar biosynthesis anti-sigma factor FlgM, at 185,770 to 186,072 _RS30515 QEN71_RS30520: QEN71_RS30520 - porin, at 186,117 to 187,241 _RS30520 Position (kb) 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 185.034 kb on + strand, within QEN71_RS30510at 185.034 kb on + strand, within QEN71_RS30510at 185.095 kb on - strand, within QEN71_RS30510at 185.133 kb on + strand, within QEN71_RS30510at 185.133 kb on + strand, within QEN71_RS30510at 185.133 kb on + strand, within QEN71_RS30510at 185.133 kb on + strand, within QEN71_RS30510at 185.133 kb on + strand, within QEN71_RS30510at 185.134 kb on - strand, within QEN71_RS30510at 185.134 kb on - strand, within QEN71_RS30510at 185.142 kb on + strand, within QEN71_RS30510at 185.143 kb on - strand, within QEN71_RS30510at 185.208 kb on + strand, within QEN71_RS30510at 185.209 kb on - strand, within QEN71_RS30510at 185.209 kb on - strand, within QEN71_RS30510at 185.209 kb on - strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.296 kb on + strand, within QEN71_RS30510at 185.297 kb on - strand, within QEN71_RS30510at 185.297 kb on - strand, within QEN71_RS30510at 185.297 kb on - strand, within QEN71_RS30510at 185.297 kb on - strand, within QEN71_RS30510at 185.739 kb on + strandat 185.790 kb on + strandat 185.790 kb on + strandat 185.790 kb on + strandat 185.790 kb on + strandat 185.790 kb on + strandat 185.790 kb on + strandat 185.791 kb on - strandat 185.791 kb on - strandat 185.791 kb on - strandat 185.995 kb on + strand, within QEN71_RS30515at 185.995 kb on + strand, within QEN71_RS30515at 185.995 kb on + strand, within QEN71_RS30515at 185.996 kb on - strand, within QEN71_RS30515at 185.996 kb on - strand, within QEN71_RS30515at 185.996 kb on - strand, within QEN71_RS30515at 185.996 kb on - strand, within QEN71_RS30515at 185.996 kb on - strand, within QEN71_RS30515at 186.027 kb on + strand, within QEN71_RS30515at 186.027 kb on + strand, within QEN71_RS30515at 186.028 kb on - strand, within QEN71_RS30515at 186.205 kb on + strandat 186.206 kb on - strandat 186.220 kb on + strandat 186.220 kb on + strandat 186.220 kb on + strandat 186.221 kb on - strandat 186.221 kb on - strandat 186.221 kb on - strandat 186.221 kb on - strandat 186.221 kb on - strandat 186.247 kb on + strand, within QEN71_RS30520at 186.247 kb on + strand, within QEN71_RS30520at 186.320 kb on - strand, within QEN71_RS30520at 186.373 kb on - strand, within QEN71_RS30520at 186.393 kb on - strand, within QEN71_RS30520at 186.439 kb on + strand, within QEN71_RS30520at 186.439 kb on + strand, within QEN71_RS30520at 186.439 kb on + strand, within QEN71_RS30520at 186.440 kb on - strand, within QEN71_RS30520at 186.451 kb on + strand, within QEN71_RS30520at 186.452 kb on - strand, within QEN71_RS30520at 186.460 kb on + strand, within QEN71_RS30520at 186.460 kb on + strand, within QEN71_RS30520at 186.461 kb on - strand, within QEN71_RS30520at 186.461 kb on - strand, within QEN71_RS30520at 186.517 kb on + strand, within QEN71_RS30520at 186.518 kb on - strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.523 kb on + strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.524 kb on - strand, within QEN71_RS30520at 186.526 kb on + strand, within QEN71_RS30520at 186.556 kb on + strand, within QEN71_RS30520at 186.556 kb on + strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.557 kb on - strand, within QEN71_RS30520at 186.636 kb on + strand, within QEN71_RS30520at 186.636 kb on + strand, within QEN71_RS30520at 186.637 kb on - strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.649 kb on + strand, within QEN71_RS30520at 186.650 kb on - strand, within QEN71_RS30520at 186.668 kb on - strand, within QEN71_RS30520at 186.668 kb on - strand, within QEN71_RS30520at 186.712 kb on + strand, within QEN71_RS30520at 186.712 kb on + strand, within QEN71_RS30520at 186.751 kb on + strand, within QEN71_RS30520at 186.784 kb on + strand, within QEN71_RS30520at 186.785 kb on - strand, within QEN71_RS30520at 186.785 kb on - strand, within QEN71_RS30520at 186.838 kb on + strand, within QEN71_RS30520at 186.838 kb on + strand, within QEN71_RS30520at 186.868 kb on + strand, within QEN71_RS30520at 186.869 kb on - strand, within QEN71_RS30520at 186.869 kb on - strand, within QEN71_RS30520at 186.869 kb on - strand, within QEN71_RS30520at 186.895 kb on + strand, within QEN71_RS30520at 186.895 kb on + strand, within QEN71_RS30520at 186.895 kb on + strand, within QEN71_RS30520at 186.916 kb on + strand, within QEN71_RS30520at 186.916 kb on + strand, within QEN71_RS30520at 186.916 kb on + strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520at 186.917 kb on - strand, within QEN71_RS30520

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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185,034 + QEN71_RS30510 0.20 -0.3
185,034 + QEN71_RS30510 0.20 +2.0
185,095 - QEN71_RS30510 0.29 -1.4
185,133 + QEN71_RS30510 0.35 +0.2
185,133 + QEN71_RS30510 0.35 +0.1
185,133 + QEN71_RS30510 0.35 +0.4
185,133 + QEN71_RS30510 0.35 -0.1
185,133 + QEN71_RS30510 0.35 +0.7
185,134 - QEN71_RS30510 0.35 -1.1
185,134 - QEN71_RS30510 0.35 -1.1
185,142 + QEN71_RS30510 0.36 +0.6
185,143 - QEN71_RS30510 0.36 +0.2
185,208 + QEN71_RS30510 0.46 -0.5
185,209 - QEN71_RS30510 0.46 -0.3
185,209 - QEN71_RS30510 0.46 -0.7
185,209 - QEN71_RS30510 0.46 -0.9
185,296 + QEN71_RS30510 0.60 +0.4
185,296 + QEN71_RS30510 0.60 -1.3
185,296 + QEN71_RS30510 0.60 +0.5
185,296 + QEN71_RS30510 0.60 +0.1
185,296 + QEN71_RS30510 0.60 +0.4
185,296 + QEN71_RS30510 0.60 +0.5
185,296 + QEN71_RS30510 0.60 +0.2
185,296 + QEN71_RS30510 0.60 -0.5
185,296 + QEN71_RS30510 0.60 -1.7
185,297 - QEN71_RS30510 0.60 -0.3
185,297 - QEN71_RS30510 0.60 +0.3
185,297 - QEN71_RS30510 0.60 -0.6
185,297 - QEN71_RS30510 0.60 +0.2
185,739 + +0.1
185,790 + +1.6
185,790 + +1.3
185,790 + +0.2
185,790 + +0.3
185,790 + -0.2
185,790 + -0.4
185,791 - +1.9
185,791 - +1.0
185,791 - -0.2
185,995 + QEN71_RS30515 0.74 -0.3
185,995 + QEN71_RS30515 0.74 -0.1
185,995 + QEN71_RS30515 0.74 +0.5
185,996 - QEN71_RS30515 0.75 -1.3
185,996 - QEN71_RS30515 0.75 -0.5
185,996 - QEN71_RS30515 0.75 -0.7
185,996 - QEN71_RS30515 0.75 +0.2
185,996 - QEN71_RS30515 0.75 -0.3
186,027 + QEN71_RS30515 0.85 +0.1
186,027 + QEN71_RS30515 0.85 +0.3
186,028 - QEN71_RS30515 0.85 +0.4
186,205 + +0.1
186,206 - -0.3
186,220 + -0.8
186,220 + -0.8
186,220 + -1.4
186,221 - -0.5
186,221 - -1.4
186,221 - +1.2
186,221 - -2.8
186,221 - -0.5
186,247 + QEN71_RS30520 0.12 -0.7
186,247 + QEN71_RS30520 0.12 -0.4
186,320 - QEN71_RS30520 0.18 -1.6
186,373 - QEN71_RS30520 0.23 +1.4
186,393 - QEN71_RS30520 0.25 +0.2
186,439 + QEN71_RS30520 0.29 +1.1
186,439 + QEN71_RS30520 0.29 -1.4
186,439 + QEN71_RS30520 0.29 -1.0
186,440 - QEN71_RS30520 0.29 -0.8
186,451 + QEN71_RS30520 0.30 +0.1
186,452 - QEN71_RS30520 0.30 -1.0
186,460 + QEN71_RS30520 0.30 +0.3
186,460 + QEN71_RS30520 0.30 +1.1
186,461 - QEN71_RS30520 0.31 +0.8
186,461 - QEN71_RS30520 0.31 +0.5
186,517 + QEN71_RS30520 0.36 -0.3
186,518 - QEN71_RS30520 0.36 +0.3
186,523 + QEN71_RS30520 0.36 -3.0
186,523 + QEN71_RS30520 0.36 +0.2
186,523 + QEN71_RS30520 0.36 +0.3
186,523 + QEN71_RS30520 0.36 -0.8
186,524 - QEN71_RS30520 0.36 +1.1
186,524 - QEN71_RS30520 0.36 -0.6
186,524 - QEN71_RS30520 0.36 +0.0
186,524 - QEN71_RS30520 0.36 -0.2
186,524 - QEN71_RS30520 0.36 -0.4
186,524 - QEN71_RS30520 0.36 +0.9
186,524 - QEN71_RS30520 0.36 -0.6
186,526 + QEN71_RS30520 0.36 -0.3
186,556 + QEN71_RS30520 0.39 -0.2
186,556 + QEN71_RS30520 0.39 -0.4
186,557 - QEN71_RS30520 0.39 -0.1
186,557 - QEN71_RS30520 0.39 +0.2
186,557 - QEN71_RS30520 0.39 +0.7
186,557 - QEN71_RS30520 0.39 -0.6
186,557 - QEN71_RS30520 0.39 -0.6
186,636 + QEN71_RS30520 0.46 -1.3
186,636 + QEN71_RS30520 0.46 -0.5
186,637 - QEN71_RS30520 0.46 +0.4
186,649 + QEN71_RS30520 0.47 -0.1
186,649 + QEN71_RS30520 0.47 +0.0
186,649 + QEN71_RS30520 0.47 -0.9
186,649 + QEN71_RS30520 0.47 +0.3
186,650 - QEN71_RS30520 0.47 -0.3
186,668 - QEN71_RS30520 0.49 -0.1
186,668 - QEN71_RS30520 0.49 -0.5
186,712 + QEN71_RS30520 0.53 -0.5
186,712 + QEN71_RS30520 0.53 -0.6
186,751 + QEN71_RS30520 0.56 -1.2
186,784 + QEN71_RS30520 0.59 +0.4
186,785 - QEN71_RS30520 0.59 +1.2
186,785 - QEN71_RS30520 0.59 +1.4
186,838 + QEN71_RS30520 0.64 +0.3
186,838 + QEN71_RS30520 0.64 -0.2
186,868 + QEN71_RS30520 0.67 -0.1
186,869 - QEN71_RS30520 0.67 -0.3
186,869 - QEN71_RS30520 0.67 +0.2
186,869 - QEN71_RS30520 0.67 -0.0
186,895 + QEN71_RS30520 0.69 -0.3
186,895 + QEN71_RS30520 0.69 +0.0
186,895 + QEN71_RS30520 0.69 +0.2
186,916 + QEN71_RS30520 0.71 -0.2
186,916 + QEN71_RS30520 0.71 +1.5
186,916 + QEN71_RS30520 0.71 -1.8
186,917 - QEN71_RS30520 0.71 +1.0
186,917 - QEN71_RS30520 0.71 +1.7
186,917 - QEN71_RS30520 0.71 +0.5
186,917 - QEN71_RS30520 0.71 +0.6

Or see this region's nucleotide sequence