Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS28555

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS28550 and QEN71_RS28555 are separated by 278 nucleotidesQEN71_RS28555 and QEN71_RS28560 are separated by 13 nucleotides QEN71_RS28550: QEN71_RS28550 - diguanylate cyclase, at 6,331,739 to 6,333,349 _RS28550 QEN71_RS28555: QEN71_RS28555 - GGDEF domain-containing protein, at 6,333,628 to 6,334,578 _RS28555 QEN71_RS28560: QEN71_RS28560 - LacI family DNA-binding transcriptional regulator, at 6,334,592 to 6,335,641 _RS28560 Position (kb) 6333 6334 6335Strain fitness (log2 ratio) -2 -1 0 1 2at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.924 kb on + strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6332.925 kb on - strand, within QEN71_RS28550at 6333.178 kb on + strand, within QEN71_RS28550at 6333.178 kb on + strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.179 kb on - strand, within QEN71_RS28550at 6333.218 kb on + strandat 6333.218 kb on + strandat 6333.218 kb on + strandat 6333.218 kb on + strandat 6333.219 kb on - strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.347 kb on + strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.348 kb on - strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.419 kb on + strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.420 kb on - strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.451 kb on + strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.452 kb on - strandat 6333.544 kb on - strandat 6333.623 kb on - strandat 6333.623 kb on - strandat 6333.623 kb on - strandat 6333.623 kb on - strandat 6333.718 kb on + strandat 6333.718 kb on + strandat 6333.718 kb on + strandat 6333.718 kb on + strandat 6333.719 kb on - strandat 6334.497 kb on - strandat 6334.519 kb on + strandat 6334.520 kb on - strandat 6334.520 kb on - strandat 6334.576 kb on + strandat 6334.594 kb on - strandat 6334.633 kb on + strandat 6334.633 kb on + strandat 6334.634 kb on - strandat 6334.820 kb on - strand, within QEN71_RS28560at 6334.998 kb on + strand, within QEN71_RS28560at 6334.998 kb on + strand, within QEN71_RS28560at 6334.999 kb on - strand, within QEN71_RS28560at 6334.999 kb on - strand, within QEN71_RS28560at 6334.999 kb on - strand, within QEN71_RS28560at 6335.078 kb on + strand, within QEN71_RS28560at 6335.078 kb on + strand, within QEN71_RS28560at 6335.079 kb on - strand, within QEN71_RS28560at 6335.079 kb on - strand, within QEN71_RS28560at 6335.079 kb on - strand, within QEN71_RS28560at 6335.079 kb on - strand, within QEN71_RS28560at 6335.118 kb on + strand, within QEN71_RS28560at 6335.161 kb on - strand, within QEN71_RS28560at 6335.161 kb on - strand, within QEN71_RS28560at 6335.185 kb on + strand, within QEN71_RS28560at 6335.185 kb on + strand, within QEN71_RS28560at 6335.186 kb on - strand, within QEN71_RS28560at 6335.236 kb on + strand, within QEN71_RS28560at 6335.236 kb on + strand, within QEN71_RS28560at 6335.237 kb on - strand, within QEN71_RS28560at 6335.513 kb on + strand, within QEN71_RS28560at 6335.514 kb on - strand, within QEN71_RS28560at 6335.514 kb on - strand, within QEN71_RS28560at 6335.514 kb on - strand, within QEN71_RS28560

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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6,332,924 + QEN71_RS28550 0.74 +0.1
6,332,924 + QEN71_RS28550 0.74 +0.1
6,332,924 + QEN71_RS28550 0.74 -0.1
6,332,924 + QEN71_RS28550 0.74 +0.6
6,332,924 + QEN71_RS28550 0.74 +0.3
6,332,924 + QEN71_RS28550 0.74 -0.5
6,332,924 + QEN71_RS28550 0.74 -0.4
6,332,924 + QEN71_RS28550 0.74 -0.6
6,332,924 + QEN71_RS28550 0.74 +0.2
6,332,925 - QEN71_RS28550 0.74 +0.2
6,332,925 - QEN71_RS28550 0.74 +0.6
6,332,925 - QEN71_RS28550 0.74 -0.5
6,332,925 - QEN71_RS28550 0.74 -1.3
6,333,178 + QEN71_RS28550 0.89 +1.2
6,333,178 + QEN71_RS28550 0.89 +0.1
6,333,179 - QEN71_RS28550 0.89 +0.1
6,333,179 - QEN71_RS28550 0.89 -0.0
6,333,179 - QEN71_RS28550 0.89 +0.2
6,333,179 - QEN71_RS28550 0.89 +1.4
6,333,179 - QEN71_RS28550 0.89 +0.6
6,333,179 - QEN71_RS28550 0.89 +0.6
6,333,218 + -0.4
6,333,218 + +0.1
6,333,218 + +0.0
6,333,218 + +1.8
6,333,219 - +1.3
6,333,347 + +0.7
6,333,347 + -1.0
6,333,347 + -0.7
6,333,347 + +2.0
6,333,347 + -0.8
6,333,347 + +0.8
6,333,347 + +0.6
6,333,348 - -1.0
6,333,348 - -0.9
6,333,348 - -1.6
6,333,348 - +0.2
6,333,348 - -0.6
6,333,419 + -0.8
6,333,419 + +0.4
6,333,419 + -0.7
6,333,419 + +1.1
6,333,419 + +0.0
6,333,419 + -0.5
6,333,419 + -0.6
6,333,420 - +0.0
6,333,420 - -0.9
6,333,420 - +0.3
6,333,420 - -0.3
6,333,420 - -0.0
6,333,420 - -0.5
6,333,420 - -0.1
6,333,420 - -0.1
6,333,420 - +1.2
6,333,451 + -0.9
6,333,451 + +0.8
6,333,451 + +0.4
6,333,451 + +0.4
6,333,451 + +0.8
6,333,451 + -0.3
6,333,451 + -2.5
6,333,451 + +0.4
6,333,452 - -1.7
6,333,452 - -1.5
6,333,452 - +0.6
6,333,452 - +0.1
6,333,452 - -0.5
6,333,544 - +0.1
6,333,623 - -0.5
6,333,623 - +0.9
6,333,623 - -0.1
6,333,623 - -0.8
6,333,718 + -0.1
6,333,718 + +0.0
6,333,718 + -2.1
6,333,718 + -0.9
6,333,719 - +1.4
6,334,497 - +0.1
6,334,519 + -0.2
6,334,520 - +0.8
6,334,520 - -0.1
6,334,576 + +0.1
6,334,594 - -0.1
6,334,633 + +1.0
6,334,633 + -0.1
6,334,634 - +0.1
6,334,820 - QEN71_RS28560 0.22 -0.3
6,334,998 + QEN71_RS28560 0.39 -0.3
6,334,998 + QEN71_RS28560 0.39 -0.5
6,334,999 - QEN71_RS28560 0.39 +0.3
6,334,999 - QEN71_RS28560 0.39 -0.8
6,334,999 - QEN71_RS28560 0.39 -0.6
6,335,078 + QEN71_RS28560 0.46 -0.4
6,335,078 + QEN71_RS28560 0.46 -0.3
6,335,079 - QEN71_RS28560 0.46 +1.7
6,335,079 - QEN71_RS28560 0.46 +0.6
6,335,079 - QEN71_RS28560 0.46 -0.0
6,335,079 - QEN71_RS28560 0.46 +0.5
6,335,118 + QEN71_RS28560 0.50 +0.5
6,335,161 - QEN71_RS28560 0.54 -0.7
6,335,161 - QEN71_RS28560 0.54 -1.0
6,335,185 + QEN71_RS28560 0.56 +0.0
6,335,185 + QEN71_RS28560 0.56 -0.4
6,335,186 - QEN71_RS28560 0.57 -0.5
6,335,236 + QEN71_RS28560 0.61 -0.2
6,335,236 + QEN71_RS28560 0.61 -0.3
6,335,237 - QEN71_RS28560 0.61 +0.0
6,335,513 + QEN71_RS28560 0.88 -1.7
6,335,514 - QEN71_RS28560 0.88 +0.7
6,335,514 - QEN71_RS28560 0.88 +0.3
6,335,514 - QEN71_RS28560 0.88 +0.1

Or see this region's nucleotide sequence