Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27980

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27970 and QEN71_RS27975 are separated by 30 nucleotidesQEN71_RS27975 and QEN71_RS27980 are separated by 16 nucleotidesQEN71_RS27980 and QEN71_RS27985 are separated by 403 nucleotides QEN71_RS27970: QEN71_RS27970 - hypothetical protein, at 6,218,913 to 6,219,638 _RS27970 QEN71_RS27975: QEN71_RS27975 - hypothetical protein, at 6,219,669 to 6,219,878 _RS27975 QEN71_RS27980: QEN71_RS27980 - hypothetical protein, at 6,219,895 to 6,220,086 _RS27980 QEN71_RS27985: QEN71_RS27985 - response regulator, at 6,220,490 to 6,221,227 _RS27985 Position (kb) 6219 6220 6221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6218.965 kb on + strandat 6218.965 kb on + strandat 6218.965 kb on + strandat 6218.965 kb on + strandat 6218.965 kb on + strandat 6218.966 kb on - strandat 6218.966 kb on - strandat 6218.966 kb on - strandat 6218.966 kb on - strandat 6218.966 kb on - strandat 6218.966 kb on - strandat 6218.989 kb on + strand, within QEN71_RS27970at 6218.989 kb on + strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6218.990 kb on - strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.061 kb on + strand, within QEN71_RS27970at 6219.062 kb on - strand, within QEN71_RS27970at 6219.062 kb on - strand, within QEN71_RS27970at 6219.062 kb on - strand, within QEN71_RS27970at 6219.062 kb on - strand, within QEN71_RS27970at 6219.062 kb on - strand, within QEN71_RS27970at 6219.062 kb on - strand, within QEN71_RS27970at 6219.062 kb on - strand, within QEN71_RS27970at 6219.188 kb on - strand, within QEN71_RS27970at 6219.231 kb on + strand, within QEN71_RS27970at 6219.231 kb on + strand, within QEN71_RS27970at 6219.231 kb on + strand, within QEN71_RS27970at 6219.231 kb on + strand, within QEN71_RS27970at 6219.232 kb on - strand, within QEN71_RS27970at 6219.232 kb on - strand, within QEN71_RS27970at 6219.232 kb on - strand, within QEN71_RS27970at 6219.232 kb on - strand, within QEN71_RS27970at 6219.232 kb on - strand, within QEN71_RS27970at 6219.232 kb on - strand, within QEN71_RS27970at 6219.472 kb on + strand, within QEN71_RS27970at 6219.472 kb on + strand, within QEN71_RS27970at 6219.472 kb on + strand, within QEN71_RS27970at 6219.473 kb on - strand, within QEN71_RS27970at 6219.626 kb on - strandat 6219.652 kb on + strandat 6219.653 kb on - strandat 6219.882 kb on + strandat 6219.882 kb on + strandat 6219.883 kb on - strandat 6220.169 kb on - strandat 6220.169 kb on - strandat 6220.176 kb on - strandat 6220.241 kb on + strandat 6220.241 kb on + strandat 6220.241 kb on + strandat 6220.241 kb on + strandat 6220.242 kb on - strandat 6220.242 kb on - strandat 6220.275 kb on + strandat 6220.275 kb on + strandat 6220.275 kb on + strandat 6220.275 kb on + strandat 6220.276 kb on - strandat 6220.276 kb on - strandat 6220.276 kb on - strandat 6220.276 kb on - strandat 6220.276 kb on - strandat 6220.332 kb on + strandat 6220.333 kb on - strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.431 kb on + strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.432 kb on - strandat 6220.441 kb on + strandat 6220.441 kb on + strandat 6220.442 kb on - strandat 6220.478 kb on + strandat 6220.479 kb on - strandat 6220.568 kb on + strand, within QEN71_RS27985at 6220.568 kb on + strand, within QEN71_RS27985at 6220.568 kb on + strand, within QEN71_RS27985at 6220.569 kb on - strand, within QEN71_RS27985at 6220.569 kb on - strand, within QEN71_RS27985at 6220.569 kb on - strand, within QEN71_RS27985at 6220.787 kb on + strand, within QEN71_RS27985at 6220.787 kb on + strand, within QEN71_RS27985at 6220.787 kb on + strand, within QEN71_RS27985at 6220.787 kb on + strand, within QEN71_RS27985at 6220.787 kb on + strand, within QEN71_RS27985at 6220.787 kb on + strand, within QEN71_RS27985at 6220.787 kb on + strand, within QEN71_RS27985at 6220.788 kb on - strand, within QEN71_RS27985at 6221.009 kb on + strand, within QEN71_RS27985at 6221.009 kb on + strand, within QEN71_RS27985at 6221.009 kb on + strand, within QEN71_RS27985at 6221.009 kb on + strand, within QEN71_RS27985at 6221.010 kb on - strand, within QEN71_RS27985at 6221.010 kb on - strand, within QEN71_RS27985at 6221.010 kb on - strand, within QEN71_RS27985at 6221.010 kb on - strand, within QEN71_RS27985

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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6,218,965 + -2.0
6,218,965 + +1.0
6,218,965 + +0.1
6,218,965 + +0.1
6,218,965 + -0.6
6,218,966 - -0.6
6,218,966 - -0.3
6,218,966 - -0.7
6,218,966 - +0.3
6,218,966 - +2.3
6,218,966 - -0.4
6,218,989 + QEN71_RS27970 0.10 -0.0
6,218,989 + QEN71_RS27970 0.10 -0.5
6,218,990 - QEN71_RS27970 0.11 +0.4
6,218,990 - QEN71_RS27970 0.11 -2.8
6,218,990 - QEN71_RS27970 0.11 -1.2
6,218,990 - QEN71_RS27970 0.11 -0.7
6,218,990 - QEN71_RS27970 0.11 +0.2
6,218,990 - QEN71_RS27970 0.11 -0.5
6,218,990 - QEN71_RS27970 0.11 +0.2
6,218,990 - QEN71_RS27970 0.11 -0.8
6,219,061 + QEN71_RS27970 0.20 +1.2
6,219,061 + QEN71_RS27970 0.20 +0.4
6,219,061 + QEN71_RS27970 0.20 -0.3
6,219,061 + QEN71_RS27970 0.20 -0.4
6,219,061 + QEN71_RS27970 0.20 +0.3
6,219,061 + QEN71_RS27970 0.20 -0.2
6,219,061 + QEN71_RS27970 0.20 -1.3
6,219,061 + QEN71_RS27970 0.20 -1.9
6,219,062 - QEN71_RS27970 0.21 -0.5
6,219,062 - QEN71_RS27970 0.21 +0.3
6,219,062 - QEN71_RS27970 0.21 -0.5
6,219,062 - QEN71_RS27970 0.21 -3.1
6,219,062 - QEN71_RS27970 0.21 +0.4
6,219,062 - QEN71_RS27970 0.21 -0.5
6,219,062 - QEN71_RS27970 0.21 +0.3
6,219,188 - QEN71_RS27970 0.38 -0.4
6,219,231 + QEN71_RS27970 0.44 -1.3
6,219,231 + QEN71_RS27970 0.44 -0.1
6,219,231 + QEN71_RS27970 0.44 -0.6
6,219,231 + QEN71_RS27970 0.44 -0.0
6,219,232 - QEN71_RS27970 0.44 +1.5
6,219,232 - QEN71_RS27970 0.44 -1.7
6,219,232 - QEN71_RS27970 0.44 -0.0
6,219,232 - QEN71_RS27970 0.44 +0.4
6,219,232 - QEN71_RS27970 0.44 +0.3
6,219,232 - QEN71_RS27970 0.44 +0.7
6,219,472 + QEN71_RS27970 0.77 -0.4
6,219,472 + QEN71_RS27970 0.77 -0.2
6,219,472 + QEN71_RS27970 0.77 +0.2
6,219,473 - QEN71_RS27970 0.77 -0.5
6,219,626 - -0.1
6,219,652 + +1.5
6,219,653 - +0.1
6,219,882 + -0.6
6,219,882 + +0.2
6,219,883 - +1.5
6,220,169 - -0.9
6,220,169 - -0.2
6,220,176 - -0.0
6,220,241 + -0.3
6,220,241 + +0.2
6,220,241 + -0.4
6,220,241 + +0.4
6,220,242 - +0.2
6,220,242 - -0.3
6,220,275 + -0.0
6,220,275 + -1.7
6,220,275 + -0.0
6,220,275 + +0.0
6,220,276 - -1.1
6,220,276 - -0.4
6,220,276 - -0.4
6,220,276 - -0.0
6,220,276 - +0.1
6,220,332 + +0.0
6,220,333 - -1.7
6,220,431 + -0.5
6,220,431 + -1.0
6,220,431 + +0.1
6,220,431 + -0.3
6,220,431 + -0.7
6,220,431 + +0.4
6,220,431 + +0.7
6,220,431 + +0.5
6,220,431 + -0.2
6,220,431 + +0.3
6,220,432 - +0.3
6,220,432 - +1.4
6,220,432 - +0.2
6,220,432 - +0.4
6,220,432 - +0.5
6,220,432 - -0.1
6,220,432 - -0.0
6,220,432 - -0.8
6,220,432 - +0.2
6,220,432 - -0.9
6,220,441 + -0.4
6,220,441 + -1.0
6,220,442 - +1.3
6,220,478 + -0.7
6,220,479 - +1.1
6,220,568 + QEN71_RS27985 0.11 +0.2
6,220,568 + QEN71_RS27985 0.11 +0.2
6,220,568 + QEN71_RS27985 0.11 -1.8
6,220,569 - QEN71_RS27985 0.11 -0.5
6,220,569 - QEN71_RS27985 0.11 +1.3
6,220,569 - QEN71_RS27985 0.11 -0.1
6,220,787 + QEN71_RS27985 0.40 +1.6
6,220,787 + QEN71_RS27985 0.40 +0.2
6,220,787 + QEN71_RS27985 0.40 +1.0
6,220,787 + QEN71_RS27985 0.40 -0.2
6,220,787 + QEN71_RS27985 0.40 +0.5
6,220,787 + QEN71_RS27985 0.40 +0.5
6,220,787 + QEN71_RS27985 0.40 -1.0
6,220,788 - QEN71_RS27985 0.40 +0.8
6,221,009 + QEN71_RS27985 0.70 -1.4
6,221,009 + QEN71_RS27985 0.70 -0.2
6,221,009 + QEN71_RS27985 0.70 +0.6
6,221,009 + QEN71_RS27985 0.70 +0.2
6,221,010 - QEN71_RS27985 0.70 +0.4
6,221,010 - QEN71_RS27985 0.70 -0.7
6,221,010 - QEN71_RS27985 0.70 -0.2
6,221,010 - QEN71_RS27985 0.70 +0.8

Or see this region's nucleotide sequence