Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS23090 and QEN71_RS23095 are separated by 24 nucleotides QEN71_RS23095 and QEN71_RS23100 are separated by 165 nucleotides QEN71_RS23100 and QEN71_RS23105 are separated by 96 nucleotides
QEN71_RS23090: QEN71_RS23090 - tRNA pseudouridine(55) synthase TruB, at 5,133,119 to 5,134,048
_RS23090
QEN71_RS23095: QEN71_RS23095 - 30S ribosome-binding factor RbfA, at 5,134,073 to 5,134,438
_RS23095
QEN71_RS23100: QEN71_RS23100 - translation initiation factor IF-2, at 5,134,604 to 5,137,504
_RS23100
QEN71_RS23105: QEN71_RS23105 - transcription termination factor NusA, at 5,137,601 to 5,139,076
_RS23105
Position (kb) 5134
5135
5136
5137
5138 Strain fitness (log2 ratio) -2
-1
0
1 at 5133.624 kb on + strand, within QEN71_RS23090 at 5133.624 kb on + strand, within QEN71_RS23090 at 5133.630 kb on + strand, within QEN71_RS23090 at 5133.631 kb on - strand, within QEN71_RS23090 at 5133.663 kb on + strand, within QEN71_RS23090 at 5133.663 kb on + strand, within QEN71_RS23090 at 5133.664 kb on - strand, within QEN71_RS23090 at 5133.813 kb on + strand, within QEN71_RS23090 at 5133.813 kb on + strand, within QEN71_RS23090 at 5133.813 kb on + strand, within QEN71_RS23090 at 5133.813 kb on + strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.814 kb on - strand, within QEN71_RS23090 at 5133.910 kb on + strand, within QEN71_RS23090 at 5133.933 kb on + strand, within QEN71_RS23090 at 5133.933 kb on + strand, within QEN71_RS23090 at 5133.934 kb on - strand, within QEN71_RS23090 at 5133.934 kb on - strand, within QEN71_RS23090 at 5133.934 kb on - strand, within QEN71_RS23090 at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.048 kb on + strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.049 kb on - strand at 5134.538 kb on - strand at 5134.590 kb on - strand at 5134.590 kb on - strand at 5134.590 kb on - strand at 5134.590 kb on - strand at 5134.590 kb on - strand at 5134.590 kb on - strand at 5134.590 kb on - strand at 5134.606 kb on - strand at 5134.613 kb on - strand at 5134.613 kb on - strand at 5137.516 kb on - strand at 5137.563 kb on - strand at 5137.631 kb on - strand at 5137.631 kb on - strand at 5137.631 kb on - strand at 5137.631 kb on - strand at 5137.631 kb on - strand at 5137.631 kb on - strand at 5137.631 kb on - strand at 5137.631 kb on - strand at 5137.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 5,133,624 + QEN71_RS23090 0.54 +0.4 5,133,624 + QEN71_RS23090 0.54 -1.2 5,133,630 + QEN71_RS23090 0.55 -1.1 5,133,631 - QEN71_RS23090 0.55 -0.4 5,133,663 + QEN71_RS23090 0.58 +0.9 5,133,663 + QEN71_RS23090 0.58 -1.0 5,133,664 - QEN71_RS23090 0.59 -1.0 5,133,813 + QEN71_RS23090 0.75 -1.5 5,133,813 + QEN71_RS23090 0.75 -0.9 5,133,813 + QEN71_RS23090 0.75 -0.6 5,133,813 + QEN71_RS23090 0.75 -0.4 5,133,814 - QEN71_RS23090 0.75 -1.3 5,133,814 - QEN71_RS23090 0.75 +0.3 5,133,814 - QEN71_RS23090 0.75 +1.6 5,133,814 - QEN71_RS23090 0.75 -2.7 5,133,814 - QEN71_RS23090 0.75 -0.5 5,133,814 - QEN71_RS23090 0.75 +0.9 5,133,814 - QEN71_RS23090 0.75 -0.1 5,133,814 - QEN71_RS23090 0.75 -0.4 5,133,910 + QEN71_RS23090 0.85 -0.4 5,133,933 + QEN71_RS23090 0.88 -0.9 5,133,933 + QEN71_RS23090 0.88 +0.3 5,133,934 - QEN71_RS23090 0.88 -1.4 5,133,934 - QEN71_RS23090 0.88 +0.1 5,133,934 - QEN71_RS23090 0.88 -0.4 5,134,048 + -0.5 5,134,048 + +1.3 5,134,048 + -1.6 5,134,048 + -2.4 5,134,048 + -0.4 5,134,048 + -0.1 5,134,048 + -0.7 5,134,048 + -0.4 5,134,048 + +0.5 5,134,048 + +0.3 5,134,048 + -0.1 5,134,048 + +1.5 5,134,048 + -1.7 5,134,049 - +1.2 5,134,049 - +0.6 5,134,049 - +0.9 5,134,049 - +0.1 5,134,049 - -0.2 5,134,049 - -0.8 5,134,049 - -1.4 5,134,049 - -1.6 5,134,049 - +0.1 5,134,049 - -0.4 5,134,049 - -0.8 5,134,049 - -0.8 5,134,049 - +0.9 5,134,049 - -0.8 5,134,049 - +0.9 5,134,049 - +0.7 5,134,049 - +0.1 5,134,049 - -0.5 5,134,049 - -0.9 5,134,049 - +0.7 5,134,538 - -0.7 5,134,590 - +0.7 5,134,590 - +1.1 5,134,590 - +1.2 5,134,590 - +0.1 5,134,590 - -1.0 5,134,590 - -0.8 5,134,590 - +0.2 5,134,606 - +0.2 5,134,613 - -0.1 5,134,613 - -0.4 5,137,516 - +0.6 5,137,563 - -1.6 5,137,631 - -0.3 5,137,631 - -1.3 5,137,631 - -0.3 5,137,631 - +1.1 5,137,631 - +0.1 5,137,631 - +0.6 5,137,631 - -0.0 5,137,631 - +1.5 5,137,659 - +1.2
Or see this region's nucleotide sequence