Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14100

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14095 and QEN71_RS14100 are separated by 357 nucleotidesQEN71_RS14100 and QEN71_RS14105 are separated by 229 nucleotides QEN71_RS14095: QEN71_RS14095 - 16S ribosomal RNA, at 3,143,857 to 3,145,387 _RS14095 QEN71_RS14100: QEN71_RS14100 - alpha/beta hydrolase, at 3,145,745 to 3,146,701 _RS14100 QEN71_RS14105: QEN71_RS14105 - hypothetical protein, at 3,146,931 to 3,147,314 _RS14105 Position (kb) 3145 3146 3147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3145.931 kb on + strand, within QEN71_RS14100at 3145.932 kb on - strand, within QEN71_RS14100at 3145.932 kb on - strand, within QEN71_RS14100at 3145.932 kb on - strand, within QEN71_RS14100at 3146.217 kb on + strand, within QEN71_RS14100at 3146.295 kb on + strand, within QEN71_RS14100at 3146.296 kb on - strand, within QEN71_RS14100at 3146.296 kb on - strand, within QEN71_RS14100at 3146.296 kb on - strand, within QEN71_RS14100at 3146.342 kb on + strand, within QEN71_RS14100at 3146.342 kb on + strand, within QEN71_RS14100at 3146.343 kb on - strand, within QEN71_RS14100at 3146.343 kb on - strand, within QEN71_RS14100at 3146.344 kb on + strand, within QEN71_RS14100at 3146.345 kb on - strand, within QEN71_RS14100at 3146.345 kb on - strand, within QEN71_RS14100at 3146.345 kb on - strand, within QEN71_RS14100at 3146.374 kb on + strand, within QEN71_RS14100at 3146.507 kb on - strand, within QEN71_RS14100at 3146.507 kb on - strand, within QEN71_RS14100at 3146.536 kb on - strand, within QEN71_RS14100at 3146.536 kb on - strand, within QEN71_RS14100at 3146.536 kb on - strand, within QEN71_RS14100at 3146.536 kb on - strand, within QEN71_RS14100at 3146.536 kb on - strand, within QEN71_RS14100at 3146.536 kb on - strand, within QEN71_RS14100at 3146.687 kb on + strandat 3146.701 kb on + strandat 3146.702 kb on - strandat 3146.721 kb on - strandat 3146.721 kb on - strandat 3146.721 kb on - strandat 3146.738 kb on - strandat 3146.806 kb on + strandat 3146.806 kb on + strandat 3146.814 kb on - strandat 3146.828 kb on + strandat 3146.830 kb on + strandat 3146.830 kb on + strandat 3146.850 kb on + strandat 3146.850 kb on + strandat 3146.851 kb on - strandat 3147.261 kb on - strand, within QEN71_RS14105at 3147.261 kb on - strand, within QEN71_RS14105at 3147.358 kb on + strandat 3147.358 kb on + strandat 3147.358 kb on + strandat 3147.359 kb on - strandat 3147.359 kb on - strandat 3147.359 kb on - strandat 3147.494 kb on + strandat 3147.494 kb on + strandat 3147.497 kb on - strandat 3147.507 kb on - strandat 3147.507 kb on - strandat 3147.507 kb on - strandat 3147.536 kb on - strandat 3147.546 kb on + strandat 3147.546 kb on + strandat 3147.547 kb on - strandat 3147.551 kb on - strandat 3147.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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3,145,931 + QEN71_RS14100 0.19 -0.0
3,145,932 - QEN71_RS14100 0.20 +0.7
3,145,932 - QEN71_RS14100 0.20 -0.9
3,145,932 - QEN71_RS14100 0.20 -0.8
3,146,217 + QEN71_RS14100 0.49 -1.4
3,146,295 + QEN71_RS14100 0.57 -0.8
3,146,296 - QEN71_RS14100 0.58 -0.1
3,146,296 - QEN71_RS14100 0.58 -1.7
3,146,296 - QEN71_RS14100 0.58 +0.2
3,146,342 + QEN71_RS14100 0.62 +0.5
3,146,342 + QEN71_RS14100 0.62 +0.0
3,146,343 - QEN71_RS14100 0.62 -0.1
3,146,343 - QEN71_RS14100 0.62 +0.8
3,146,344 + QEN71_RS14100 0.63 -0.7
3,146,345 - QEN71_RS14100 0.63 -0.2
3,146,345 - QEN71_RS14100 0.63 -2.9
3,146,345 - QEN71_RS14100 0.63 +0.8
3,146,374 + QEN71_RS14100 0.66 -0.0
3,146,507 - QEN71_RS14100 0.80 +0.2
3,146,507 - QEN71_RS14100 0.80 -0.2
3,146,536 - QEN71_RS14100 0.83 +2.4
3,146,536 - QEN71_RS14100 0.83 +0.0
3,146,536 - QEN71_RS14100 0.83 -1.1
3,146,536 - QEN71_RS14100 0.83 -0.3
3,146,536 - QEN71_RS14100 0.83 -0.2
3,146,536 - QEN71_RS14100 0.83 -0.1
3,146,687 + -0.4
3,146,701 + -1.0
3,146,702 - +0.5
3,146,721 - +0.4
3,146,721 - -0.0
3,146,721 - -1.4
3,146,738 - -0.4
3,146,806 + +0.7
3,146,806 + +0.5
3,146,814 - -0.3
3,146,828 + -0.7
3,146,830 + +0.4
3,146,830 + +2.1
3,146,850 + -0.3
3,146,850 + +0.6
3,146,851 - +0.0
3,147,261 - QEN71_RS14105 0.86 -0.4
3,147,261 - QEN71_RS14105 0.86 +0.4
3,147,358 + -0.1
3,147,358 + +0.1
3,147,358 + -0.0
3,147,359 - -1.0
3,147,359 - -0.4
3,147,359 - -0.9
3,147,494 + -0.6
3,147,494 + -0.1
3,147,497 - +0.5
3,147,507 - -0.2
3,147,507 - -0.1
3,147,507 - +0.3
3,147,536 - -0.2
3,147,546 + -0.8
3,147,546 + +1.5
3,147,547 - -0.5
3,147,551 - +0.3
3,147,613 + -0.8

Or see this region's nucleotide sequence