Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS14065

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS14055 and QEN71_RS14060 are separated by 164 nucleotidesQEN71_RS14060 and QEN71_RS14065 are separated by 12 nucleotidesQEN71_RS14065 and QEN71_RS14070 are separated by 47 nucleotidesQEN71_RS14070 and QEN71_RS14075 are separated by 94 nucleotides QEN71_RS14055: QEN71_RS14055 - SDR family NAD(P)-dependent oxidoreductase, at 3,137,436 to 3,138,146 _RS14055 QEN71_RS14060: QEN71_RS14060 - sigma-70 family RNA polymerase sigma factor, at 3,138,311 to 3,138,895 _RS14060 QEN71_RS14065: QEN71_RS14065 - hypothetical protein, at 3,138,908 to 3,139,216 _RS14065 QEN71_RS14070: QEN71_RS14070 - class I SAM-dependent methyltransferase, at 3,139,264 to 3,139,980 _RS14070 QEN71_RS14075: QEN71_RS14075 - 5S ribosomal RNA, at 3,140,075 to 3,140,188 _RS14075 Position (kb) 3138 3139 3140Strain fitness (log2 ratio) -2 -1 0 1at 3137.954 kb on + strand, within QEN71_RS14055at 3137.986 kb on + strand, within QEN71_RS14055at 3138.179 kb on + strandat 3138.180 kb on - strandat 3138.229 kb on + strandat 3138.229 kb on + strandat 3138.229 kb on + strandat 3138.229 kb on + strandat 3138.229 kb on + strandat 3138.230 kb on - strandat 3138.230 kb on - strandat 3138.230 kb on - strandat 3138.230 kb on - strandat 3138.281 kb on + strandat 3138.282 kb on - strandat 3138.483 kb on - strand, within QEN71_RS14060at 3138.674 kb on + strand, within QEN71_RS14060at 3138.675 kb on - strand, within QEN71_RS14060at 3138.814 kb on + strand, within QEN71_RS14060at 3138.836 kb on + strand, within QEN71_RS14060at 3138.836 kb on + strand, within QEN71_RS14060at 3138.875 kb on + strandat 3138.990 kb on + strand, within QEN71_RS14065at 3138.990 kb on + strand, within QEN71_RS14065at 3139.014 kb on + strand, within QEN71_RS14065at 3139.244 kb on - strandat 3139.263 kb on + strandat 3139.263 kb on + strandat 3139.263 kb on + strandat 3139.263 kb on + strandat 3139.263 kb on + strandat 3139.263 kb on + strandat 3139.263 kb on + strandat 3139.263 kb on + strandat 3139.264 kb on - strandat 3139.264 kb on - strandat 3139.264 kb on - strandat 3139.264 kb on - strandat 3139.290 kb on - strandat 3139.290 kb on - strandat 3139.356 kb on + strand, within QEN71_RS14070at 3139.356 kb on + strand, within QEN71_RS14070at 3139.356 kb on + strand, within QEN71_RS14070at 3139.357 kb on - strand, within QEN71_RS14070at 3139.388 kb on - strand, within QEN71_RS14070at 3139.388 kb on - strand, within QEN71_RS14070at 3139.444 kb on - strand, within QEN71_RS14070at 3139.577 kb on + strand, within QEN71_RS14070at 3139.577 kb on + strand, within QEN71_RS14070at 3139.578 kb on - strand, within QEN71_RS14070at 3139.578 kb on - strand, within QEN71_RS14070at 3139.589 kb on - strand, within QEN71_RS14070at 3139.589 kb on - strand, within QEN71_RS14070at 3139.614 kb on - strand, within QEN71_RS14070at 3139.698 kb on + strand, within QEN71_RS14070at 3139.699 kb on - strand, within QEN71_RS14070at 3139.699 kb on - strand, within QEN71_RS14070at 3139.702 kb on + strand, within QEN71_RS14070at 3139.702 kb on + strand, within QEN71_RS14070at 3139.702 kb on + strand, within QEN71_RS14070at 3139.702 kb on + strand, within QEN71_RS14070at 3139.703 kb on - strand, within QEN71_RS14070at 3139.703 kb on - strand, within QEN71_RS14070at 3139.703 kb on - strand, within QEN71_RS14070at 3139.703 kb on - strand, within QEN71_RS14070at 3139.703 kb on - strand, within QEN71_RS14070at 3139.703 kb on - strand, within QEN71_RS14070at 3139.703 kb on - strand, within QEN71_RS14070at 3139.710 kb on + strand, within QEN71_RS14070at 3139.791 kb on + strand, within QEN71_RS14070at 3139.791 kb on + strand, within QEN71_RS14070at 3139.791 kb on + strand, within QEN71_RS14070at 3139.792 kb on - strand, within QEN71_RS14070at 3139.792 kb on - strand, within QEN71_RS14070at 3139.792 kb on - strand, within QEN71_RS14070at 3139.792 kb on - strand, within QEN71_RS14070at 3139.792 kb on - strand, within QEN71_RS14070at 3139.795 kb on + strand, within QEN71_RS14070at 3139.795 kb on + strand, within QEN71_RS14070at 3139.796 kb on - strand, within QEN71_RS14070at 3139.796 kb on - strand, within QEN71_RS14070at 3139.864 kb on + strand, within QEN71_RS14070at 3139.864 kb on + strand, within QEN71_RS14070at 3139.864 kb on + strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.865 kb on - strand, within QEN71_RS14070at 3139.891 kb on + strand, within QEN71_RS14070at 3139.891 kb on + strand, within QEN71_RS14070at 3139.892 kb on - strand, within QEN71_RS14070at 3139.892 kb on - strand, within QEN71_RS14070at 3139.892 kb on - strand, within QEN71_RS14070at 3139.892 kb on - strand, within QEN71_RS14070at 3139.900 kb on + strand, within QEN71_RS14070at 3139.901 kb on - strand, within QEN71_RS14070at 3140.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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3,137,954 + QEN71_RS14055 0.73 -0.0
3,137,986 + QEN71_RS14055 0.77 +0.1
3,138,179 + -1.0
3,138,180 - -1.0
3,138,229 + +1.0
3,138,229 + +0.2
3,138,229 + -1.9
3,138,229 + +0.3
3,138,229 + -0.0
3,138,230 - +1.1
3,138,230 - -0.5
3,138,230 - -0.0
3,138,230 - +0.2
3,138,281 + -0.1
3,138,282 - +0.0
3,138,483 - QEN71_RS14060 0.29 -0.7
3,138,674 + QEN71_RS14060 0.62 -2.4
3,138,675 - QEN71_RS14060 0.62 -1.2
3,138,814 + QEN71_RS14060 0.86 -0.7
3,138,836 + QEN71_RS14060 0.90 -2.0
3,138,836 + QEN71_RS14060 0.90 +0.5
3,138,875 + -0.4
3,138,990 + QEN71_RS14065 0.27 -1.9
3,138,990 + QEN71_RS14065 0.27 -2.3
3,139,014 + QEN71_RS14065 0.34 -1.2
3,139,244 - -2.1
3,139,263 + +1.0
3,139,263 + +0.3
3,139,263 + -1.1
3,139,263 + -0.4
3,139,263 + -1.2
3,139,263 + +0.3
3,139,263 + -0.5
3,139,263 + -1.0
3,139,264 - -0.5
3,139,264 - +0.9
3,139,264 - +0.2
3,139,264 - -1.7
3,139,290 - -1.0
3,139,290 - -0.2
3,139,356 + QEN71_RS14070 0.13 +0.4
3,139,356 + QEN71_RS14070 0.13 +0.5
3,139,356 + QEN71_RS14070 0.13 +0.8
3,139,357 - QEN71_RS14070 0.13 +0.2
3,139,388 - QEN71_RS14070 0.17 -0.4
3,139,388 - QEN71_RS14070 0.17 +0.3
3,139,444 - QEN71_RS14070 0.25 -0.8
3,139,577 + QEN71_RS14070 0.44 +0.1
3,139,577 + QEN71_RS14070 0.44 -0.2
3,139,578 - QEN71_RS14070 0.44 -1.6
3,139,578 - QEN71_RS14070 0.44 -0.5
3,139,589 - QEN71_RS14070 0.45 -1.9
3,139,589 - QEN71_RS14070 0.45 -0.5
3,139,614 - QEN71_RS14070 0.49 -2.6
3,139,698 + QEN71_RS14070 0.61 -0.4
3,139,699 - QEN71_RS14070 0.61 -0.2
3,139,699 - QEN71_RS14070 0.61 +0.4
3,139,702 + QEN71_RS14070 0.61 +0.5
3,139,702 + QEN71_RS14070 0.61 +0.3
3,139,702 + QEN71_RS14070 0.61 -0.0
3,139,702 + QEN71_RS14070 0.61 +0.1
3,139,703 - QEN71_RS14070 0.61 -0.1
3,139,703 - QEN71_RS14070 0.61 +0.2
3,139,703 - QEN71_RS14070 0.61 +0.4
3,139,703 - QEN71_RS14070 0.61 -0.8
3,139,703 - QEN71_RS14070 0.61 -1.3
3,139,703 - QEN71_RS14070 0.61 -1.2
3,139,703 - QEN71_RS14070 0.61 +0.5
3,139,710 + QEN71_RS14070 0.62 -0.0
3,139,791 + QEN71_RS14070 0.74 +0.8
3,139,791 + QEN71_RS14070 0.74 +0.6
3,139,791 + QEN71_RS14070 0.74 +1.4
3,139,792 - QEN71_RS14070 0.74 -0.6
3,139,792 - QEN71_RS14070 0.74 +0.9
3,139,792 - QEN71_RS14070 0.74 +0.6
3,139,792 - QEN71_RS14070 0.74 +1.0
3,139,792 - QEN71_RS14070 0.74 -0.2
3,139,795 + QEN71_RS14070 0.74 +0.1
3,139,795 + QEN71_RS14070 0.74 -1.9
3,139,796 - QEN71_RS14070 0.74 -1.4
3,139,796 - QEN71_RS14070 0.74 -0.4
3,139,864 + QEN71_RS14070 0.84 +0.4
3,139,864 + QEN71_RS14070 0.84 -0.2
3,139,864 + QEN71_RS14070 0.84 +0.5
3,139,865 - QEN71_RS14070 0.84 +0.6
3,139,865 - QEN71_RS14070 0.84 -0.5
3,139,865 - QEN71_RS14070 0.84 -0.8
3,139,865 - QEN71_RS14070 0.84 -2.1
3,139,865 - QEN71_RS14070 0.84 -1.4
3,139,865 - QEN71_RS14070 0.84 -0.8
3,139,865 - QEN71_RS14070 0.84 -0.4
3,139,865 - QEN71_RS14070 0.84 -0.2
3,139,891 + QEN71_RS14070 0.87 -0.7
3,139,891 + QEN71_RS14070 0.87 -2.5
3,139,892 - QEN71_RS14070 0.88 -0.3
3,139,892 - QEN71_RS14070 0.88 -1.4
3,139,892 - QEN71_RS14070 0.88 +0.2
3,139,892 - QEN71_RS14070 0.88 +0.0
3,139,900 + QEN71_RS14070 0.89 +0.9
3,139,901 - QEN71_RS14070 0.89 -0.2
3,140,025 - -0.1

Or see this region's nucleotide sequence