Experiment: Motility_inner_sample_with_outgrowth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03275 and QEN71_RS03280 are separated by 120 nucleotides QEN71_RS03280 and QEN71_RS03285 overlap by 4 nucleotides QEN71_RS03285 and QEN71_RS03290 are separated by 78 nucleotides
QEN71_RS03275: QEN71_RS03275 - pyridoxal phosphate-dependent aminotransferase, at 727,267 to 728,460
_RS03275
QEN71_RS03280: QEN71_RS03280 - transcription antitermination factor NusB, at 728,581 to 729,018
_RS03280
QEN71_RS03285: QEN71_RS03285 - 6,7-dimethyl-8-ribityllumazine synthase, at 729,015 to 729,533
_RS03285
QEN71_RS03290: QEN71_RS03290 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 729,612 to 730,748
_RS03290
Position (kb) 729
730 Strain fitness (log2 ratio) -2
-1
0
1
2 at 728.066 kb on + strand, within QEN71_RS03275 at 728.067 kb on - strand, within QEN71_RS03275 at 728.067 kb on - strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.186 kb on + strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.187 kb on - strand, within QEN71_RS03275 at 728.198 kb on + strand, within QEN71_RS03275 at 728.198 kb on + strand, within QEN71_RS03275 at 728.198 kb on + strand, within QEN71_RS03275 at 728.198 kb on + strand, within QEN71_RS03275 at 728.198 kb on + strand, within QEN71_RS03275 at 728.198 kb on + strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.199 kb on - strand, within QEN71_RS03275 at 728.249 kb on + strand, within QEN71_RS03275 at 728.249 kb on + strand, within QEN71_RS03275 at 728.249 kb on + strand, within QEN71_RS03275 at 728.249 kb on + strand, within QEN71_RS03275 at 728.250 kb on - strand, within QEN71_RS03275 at 728.334 kb on + strand, within QEN71_RS03275 at 728.334 kb on + strand, within QEN71_RS03275 at 728.334 kb on + strand, within QEN71_RS03275 at 728.334 kb on + strand, within QEN71_RS03275 at 728.335 kb on - strand, within QEN71_RS03275 at 728.396 kb on + strand at 728.396 kb on + strand at 728.396 kb on + strand at 728.397 kb on - strand at 728.397 kb on - strand at 728.397 kb on - strand at 728.397 kb on - strand at 728.397 kb on - strand at 728.434 kb on + strand at 728.434 kb on + strand at 728.434 kb on + strand at 728.435 kb on - strand at 728.493 kb on + strand at 728.494 kb on - strand at 728.494 kb on - strand at 728.494 kb on - strand at 728.494 kb on - strand at 728.494 kb on - strand at 728.494 kb on - strand at 728.507 kb on + strand at 728.507 kb on + strand at 728.507 kb on + strand at 728.507 kb on + strand at 728.508 kb on - strand at 728.526 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.567 kb on + strand at 728.568 kb on - strand at 728.568 kb on - strand at 728.568 kb on - strand at 728.568 kb on - strand at 728.568 kb on - strand at 728.582 kb on + strand at 728.582 kb on + strand at 728.583 kb on - strand at 728.583 kb on - strand at 729.545 kb on - strand at 729.545 kb on - strand at 729.596 kb on - strand at 729.596 kb on - strand at 729.596 kb on - strand at 729.596 kb on - strand at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 729.770 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.073 kb on - strand, within QEN71_RS03290 at 730.157 kb on - strand, within QEN71_RS03290 at 730.157 kb on - strand, within QEN71_RS03290 at 730.389 kb on - strand, within QEN71_RS03290 at 730.431 kb on - strand, within QEN71_RS03290 at 730.431 kb on - strand, within QEN71_RS03290 at 730.508 kb on - strand, within QEN71_RS03290 at 730.508 kb on - strand, within QEN71_RS03290
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth remove 728,066 + QEN71_RS03275 0.67 -0.1 728,067 - QEN71_RS03275 0.67 -0.2 728,067 - QEN71_RS03275 0.67 -0.3 728,186 + QEN71_RS03275 0.77 +1.2 728,186 + QEN71_RS03275 0.77 -0.9 728,186 + QEN71_RS03275 0.77 +0.2 728,186 + QEN71_RS03275 0.77 +0.4 728,186 + QEN71_RS03275 0.77 -0.7 728,186 + QEN71_RS03275 0.77 -0.7 728,186 + QEN71_RS03275 0.77 -0.3 728,186 + QEN71_RS03275 0.77 +0.1 728,186 + QEN71_RS03275 0.77 +0.2 728,186 + QEN71_RS03275 0.77 +0.9 728,186 + QEN71_RS03275 0.77 +1.6 728,186 + QEN71_RS03275 0.77 -0.6 728,187 - QEN71_RS03275 0.77 +1.1 728,187 - QEN71_RS03275 0.77 -0.6 728,187 - QEN71_RS03275 0.77 +1.0 728,187 - QEN71_RS03275 0.77 -0.9 728,187 - QEN71_RS03275 0.77 -1.8 728,187 - QEN71_RS03275 0.77 +0.7 728,187 - QEN71_RS03275 0.77 +0.4 728,187 - QEN71_RS03275 0.77 +1.0 728,187 - QEN71_RS03275 0.77 +0.2 728,187 - QEN71_RS03275 0.77 +0.0 728,187 - QEN71_RS03275 0.77 -0.3 728,187 - QEN71_RS03275 0.77 -0.7 728,187 - QEN71_RS03275 0.77 -1.3 728,198 + QEN71_RS03275 0.78 +1.1 728,198 + QEN71_RS03275 0.78 -0.4 728,198 + QEN71_RS03275 0.78 -0.6 728,198 + QEN71_RS03275 0.78 -0.9 728,198 + QEN71_RS03275 0.78 -0.0 728,198 + QEN71_RS03275 0.78 +0.2 728,199 - QEN71_RS03275 0.78 -0.7 728,199 - QEN71_RS03275 0.78 -1.5 728,199 - QEN71_RS03275 0.78 -0.1 728,199 - QEN71_RS03275 0.78 -1.6 728,199 - QEN71_RS03275 0.78 -0.6 728,199 - QEN71_RS03275 0.78 -0.1 728,199 - QEN71_RS03275 0.78 -0.0 728,199 - QEN71_RS03275 0.78 -0.6 728,249 + QEN71_RS03275 0.82 -2.5 728,249 + QEN71_RS03275 0.82 +0.7 728,249 + QEN71_RS03275 0.82 +0.5 728,249 + QEN71_RS03275 0.82 +0.0 728,250 - QEN71_RS03275 0.82 -0.6 728,334 + QEN71_RS03275 0.89 -0.3 728,334 + QEN71_RS03275 0.89 +1.8 728,334 + QEN71_RS03275 0.89 -0.6 728,334 + QEN71_RS03275 0.89 +0.3 728,335 - QEN71_RS03275 0.89 +0.8 728,396 + -0.0 728,396 + -2.3 728,396 + +0.6 728,397 - -1.5 728,397 - +1.0 728,397 - -0.4 728,397 - -1.0 728,397 - -0.8 728,434 + -0.3 728,434 + -0.9 728,434 + +2.0 728,435 - +0.1 728,493 + +0.3 728,494 - +0.1 728,494 - -0.7 728,494 - +2.0 728,494 - +0.5 728,494 - -0.8 728,494 - -1.0 728,507 + +0.4 728,507 + +0.4 728,507 + +1.3 728,507 + -0.6 728,508 - +0.4 728,526 + +0.5 728,567 + -1.2 728,567 + -0.9 728,567 + -0.1 728,567 + +0.7 728,567 + +0.6 728,567 + +1.7 728,567 + +0.1 728,567 + +0.2 728,567 + -0.2 728,567 + +1.0 728,568 - -0.5 728,568 - -0.1 728,568 - -0.0 728,568 - +0.7 728,568 - +0.8 728,582 + -1.1 728,582 + +0.1 728,583 - -0.3 728,583 - -0.9 729,545 - +1.6 729,545 - -0.3 729,596 - +0.5 729,596 - +0.2 729,596 - +0.0 729,596 - -0.3 729,770 - QEN71_RS03290 0.14 +0.4 729,770 - QEN71_RS03290 0.14 +0.3 729,770 - QEN71_RS03290 0.14 -0.0 729,770 - QEN71_RS03290 0.14 +0.4 729,770 - QEN71_RS03290 0.14 -0.0 729,770 - QEN71_RS03290 0.14 +0.1 729,770 - QEN71_RS03290 0.14 -0.5 729,770 - QEN71_RS03290 0.14 +0.6 729,770 - QEN71_RS03290 0.14 -0.4 729,770 - QEN71_RS03290 0.14 -0.3 729,770 - QEN71_RS03290 0.14 -0.8 729,770 - QEN71_RS03290 0.14 -0.6 729,770 - QEN71_RS03290 0.14 -0.0 730,073 - QEN71_RS03290 0.41 -0.4 730,073 - QEN71_RS03290 0.41 +0.2 730,073 - QEN71_RS03290 0.41 -0.5 730,073 - QEN71_RS03290 0.41 +0.9 730,073 - QEN71_RS03290 0.41 -0.1 730,073 - QEN71_RS03290 0.41 -0.4 730,073 - QEN71_RS03290 0.41 -1.0 730,073 - QEN71_RS03290 0.41 +1.0 730,073 - QEN71_RS03290 0.41 +0.2 730,073 - QEN71_RS03290 0.41 -0.1 730,073 - QEN71_RS03290 0.41 +0.7 730,073 - QEN71_RS03290 0.41 +0.8 730,073 - QEN71_RS03290 0.41 +0.6 730,073 - QEN71_RS03290 0.41 -0.9 730,157 - QEN71_RS03290 0.48 +0.1 730,157 - QEN71_RS03290 0.48 +0.0 730,389 - QEN71_RS03290 0.68 +0.6 730,431 - QEN71_RS03290 0.72 +0.9 730,431 - QEN71_RS03290 0.72 +0.6 730,508 - QEN71_RS03290 0.79 -0.3 730,508 - QEN71_RS03290 0.79 -0.3
Or see this region's nucleotide sequence