Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02600

Experiment: Motility_inner_sample_with_outgrowth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02595 and QEN71_RS02600 overlap by 4 nucleotidesQEN71_RS02600 and QEN71_RS02605 overlap by 4 nucleotidesQEN71_RS02605 and QEN71_RS02610 are separated by 63 nucleotides QEN71_RS02595: QEN71_RS02595 - sugar ABC transporter permease, at 581,616 to 582,527 _RS02595 QEN71_RS02600: QEN71_RS02600 - carbohydrate ABC transporter permease, at 582,524 to 583,390 _RS02600 QEN71_RS02605: QEN71_RS02605 - HAD family phosphatase, at 583,387 to 584,079 _RS02605 QEN71_RS02610: QEN71_RS02610 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 584,143 to 585,252 _RS02610 Position (kb) 582 583 584Strain fitness (log2 ratio) -2 -1 0 1 2at 581.760 kb on + strand, within QEN71_RS02595at 581.760 kb on + strand, within QEN71_RS02595at 581.760 kb on + strand, within QEN71_RS02595at 581.761 kb on - strand, within QEN71_RS02595at 581.808 kb on + strand, within QEN71_RS02595at 581.808 kb on + strand, within QEN71_RS02595at 581.808 kb on + strand, within QEN71_RS02595at 581.809 kb on - strand, within QEN71_RS02595at 581.809 kb on - strand, within QEN71_RS02595at 581.809 kb on - strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.814 kb on + strand, within QEN71_RS02595at 581.815 kb on - strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.855 kb on + strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.856 kb on - strand, within QEN71_RS02595at 581.888 kb on + strand, within QEN71_RS02595at 581.889 kb on - strand, within QEN71_RS02595at 581.937 kb on + strand, within QEN71_RS02595at 582.036 kb on + strand, within QEN71_RS02595at 582.099 kb on + strand, within QEN71_RS02595at 582.100 kb on - strand, within QEN71_RS02595at 582.100 kb on - strand, within QEN71_RS02595at 582.333 kb on + strand, within QEN71_RS02595at 582.333 kb on + strand, within QEN71_RS02595at 582.334 kb on - strand, within QEN71_RS02595at 582.381 kb on + strand, within QEN71_RS02595at 582.381 kb on + strand, within QEN71_RS02595at 582.381 kb on + strand, within QEN71_RS02595at 582.390 kb on + strand, within QEN71_RS02595at 582.391 kb on - strand, within QEN71_RS02595at 582.541 kb on + strandat 582.542 kb on - strandat 582.542 kb on - strandat 582.542 kb on - strandat 582.551 kb on - strandat 582.696 kb on - strand, within QEN71_RS02600at 582.696 kb on - strand, within QEN71_RS02600at 582.696 kb on - strand, within QEN71_RS02600at 582.696 kb on - strand, within QEN71_RS02600at 582.754 kb on + strand, within QEN71_RS02600at 582.754 kb on + strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.755 kb on - strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.761 kb on + strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.762 kb on - strand, within QEN71_RS02600at 582.842 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.941 kb on + strand, within QEN71_RS02600at 582.942 kb on - strand, within QEN71_RS02600at 582.942 kb on - strand, within QEN71_RS02600at 582.942 kb on - strand, within QEN71_RS02600at 582.998 kb on + strand, within QEN71_RS02600at 582.998 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.043 kb on + strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.044 kb on - strand, within QEN71_RS02600at 583.084 kb on + strand, within QEN71_RS02600at 583.118 kb on + strand, within QEN71_RS02600at 583.118 kb on + strand, within QEN71_RS02600at 583.118 kb on + strand, within QEN71_RS02600at 583.119 kb on - strand, within QEN71_RS02600at 583.119 kb on - strand, within QEN71_RS02600at 583.256 kb on + strand, within QEN71_RS02600at 583.257 kb on - strand, within QEN71_RS02600at 583.257 kb on - strand, within QEN71_RS02600at 583.257 kb on - strand, within QEN71_RS02600at 583.369 kb on + strandat 583.370 kb on - strandat 583.697 kb on + strand, within QEN71_RS02605at 583.732 kb on + strand, within QEN71_RS02605at 583.732 kb on + strand, within QEN71_RS02605at 583.733 kb on - strand, within QEN71_RS02605at 583.733 kb on - strand, within QEN71_RS02605at 583.755 kb on + strand, within QEN71_RS02605at 583.755 kb on + strand, within QEN71_RS02605at 583.755 kb on + strand, within QEN71_RS02605at 583.756 kb on - strand, within QEN71_RS02605at 583.834 kb on + strand, within QEN71_RS02605at 583.834 kb on + strand, within QEN71_RS02605at 583.834 kb on + strand, within QEN71_RS02605at 583.835 kb on - strand, within QEN71_RS02605at 583.835 kb on - strand, within QEN71_RS02605at 583.835 kb on - strand, within QEN71_RS02605at 583.939 kb on + strand, within QEN71_RS02605at 583.939 kb on + strand, within QEN71_RS02605at 583.940 kb on - strand, within QEN71_RS02605at 583.940 kb on - strand, within QEN71_RS02605at 583.940 kb on - strand, within QEN71_RS02605at 583.940 kb on - strand, within QEN71_RS02605at 583.940 kb on - strand, within QEN71_RS02605at 583.940 kb on - strand, within QEN71_RS02605at 583.940 kb on - strand, within QEN71_RS02605at 583.948 kb on - strand, within QEN71_RS02605at 584.012 kb on + strandat 584.012 kb on + strandat 584.012 kb on + strandat 584.012 kb on + strandat 584.012 kb on + strandat 584.012 kb on + strandat 584.012 kb on + strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.013 kb on - strandat 584.077 kb on + strandat 584.077 kb on + strandat 584.077 kb on + strandat 584.077 kb on + strandat 584.077 kb on + strandat 584.078 kb on - strandat 584.078 kb on - strandat 584.118 kb on + strandat 584.118 kb on + strandat 584.118 kb on + strandat 584.118 kb on + strandat 584.119 kb on - strandat 584.119 kb on - strandat 584.119 kb on - strandat 584.119 kb on - strandat 584.119 kb on - strandat 584.119 kb on - strandat 584.119 kb on - strandat 584.129 kb on + strandat 584.129 kb on + strandat 584.130 kb on - strandat 584.130 kb on - strandat 584.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility_inner_sample_with_outgrowth
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581,760 + QEN71_RS02595 0.16 -0.3
581,760 + QEN71_RS02595 0.16 +0.1
581,760 + QEN71_RS02595 0.16 +0.1
581,761 - QEN71_RS02595 0.16 -0.4
581,808 + QEN71_RS02595 0.21 +1.2
581,808 + QEN71_RS02595 0.21 -0.6
581,808 + QEN71_RS02595 0.21 -0.8
581,809 - QEN71_RS02595 0.21 -0.6
581,809 - QEN71_RS02595 0.21 -1.0
581,809 - QEN71_RS02595 0.21 +0.6
581,814 + QEN71_RS02595 0.22 +1.0
581,814 + QEN71_RS02595 0.22 -0.5
581,814 + QEN71_RS02595 0.22 -0.6
581,814 + QEN71_RS02595 0.22 -1.9
581,815 - QEN71_RS02595 0.22 -0.6
581,855 + QEN71_RS02595 0.26 -0.0
581,855 + QEN71_RS02595 0.26 +0.1
581,855 + QEN71_RS02595 0.26 -0.2
581,855 + QEN71_RS02595 0.26 +1.0
581,856 - QEN71_RS02595 0.26 -0.4
581,856 - QEN71_RS02595 0.26 -1.0
581,856 - QEN71_RS02595 0.26 +0.6
581,856 - QEN71_RS02595 0.26 +0.0
581,856 - QEN71_RS02595 0.26 +0.2
581,856 - QEN71_RS02595 0.26 -1.9
581,856 - QEN71_RS02595 0.26 +0.1
581,856 - QEN71_RS02595 0.26 +0.2
581,856 - QEN71_RS02595 0.26 +0.8
581,888 + QEN71_RS02595 0.30 -0.0
581,889 - QEN71_RS02595 0.30 -0.2
581,937 + QEN71_RS02595 0.35 -0.0
582,036 + QEN71_RS02595 0.46 -0.6
582,099 + QEN71_RS02595 0.53 -0.3
582,100 - QEN71_RS02595 0.53 -0.8
582,100 - QEN71_RS02595 0.53 +0.7
582,333 + QEN71_RS02595 0.79 -0.0
582,333 + QEN71_RS02595 0.79 -0.7
582,334 - QEN71_RS02595 0.79 -0.9
582,381 + QEN71_RS02595 0.84 +0.8
582,381 + QEN71_RS02595 0.84 +0.6
582,381 + QEN71_RS02595 0.84 -0.8
582,390 + QEN71_RS02595 0.85 +0.2
582,391 - QEN71_RS02595 0.85 -0.6
582,541 + +0.1
582,542 - +1.2
582,542 - +0.2
582,542 - -1.2
582,551 - -0.1
582,696 - QEN71_RS02600 0.20 +0.5
582,696 - QEN71_RS02600 0.20 +0.8
582,696 - QEN71_RS02600 0.20 -0.0
582,696 - QEN71_RS02600 0.20 +0.1
582,754 + QEN71_RS02600 0.27 -0.7
582,754 + QEN71_RS02600 0.27 -0.7
582,755 - QEN71_RS02600 0.27 +0.8
582,755 - QEN71_RS02600 0.27 -0.8
582,755 - QEN71_RS02600 0.27 -0.5
582,755 - QEN71_RS02600 0.27 +0.1
582,761 + QEN71_RS02600 0.27 -0.0
582,761 + QEN71_RS02600 0.27 -0.6
582,761 + QEN71_RS02600 0.27 -0.4
582,761 + QEN71_RS02600 0.27 -0.5
582,761 + QEN71_RS02600 0.27 +0.2
582,762 - QEN71_RS02600 0.27 +0.6
582,762 - QEN71_RS02600 0.27 -1.0
582,762 - QEN71_RS02600 0.27 -0.1
582,762 - QEN71_RS02600 0.27 -0.1
582,762 - QEN71_RS02600 0.27 +0.1
582,842 + QEN71_RS02600 0.37 +0.0
582,941 + QEN71_RS02600 0.48 -0.6
582,941 + QEN71_RS02600 0.48 -0.3
582,941 + QEN71_RS02600 0.48 -0.4
582,941 + QEN71_RS02600 0.48 -0.2
582,941 + QEN71_RS02600 0.48 +0.1
582,942 - QEN71_RS02600 0.48 -0.5
582,942 - QEN71_RS02600 0.48 +1.0
582,942 - QEN71_RS02600 0.48 -1.5
582,998 + QEN71_RS02600 0.55 -0.2
582,998 + QEN71_RS02600 0.55 -0.8
583,043 + QEN71_RS02600 0.60 +0.3
583,043 + QEN71_RS02600 0.60 +2.5
583,043 + QEN71_RS02600 0.60 -0.5
583,043 + QEN71_RS02600 0.60 +0.6
583,044 - QEN71_RS02600 0.60 -0.2
583,044 - QEN71_RS02600 0.60 -1.6
583,044 - QEN71_RS02600 0.60 -0.3
583,044 - QEN71_RS02600 0.60 -0.2
583,084 + QEN71_RS02600 0.65 +1.5
583,118 + QEN71_RS02600 0.69 -0.8
583,118 + QEN71_RS02600 0.69 +0.2
583,118 + QEN71_RS02600 0.69 -1.8
583,119 - QEN71_RS02600 0.69 +1.0
583,119 - QEN71_RS02600 0.69 +2.0
583,256 + QEN71_RS02600 0.84 -0.6
583,257 - QEN71_RS02600 0.85 +0.3
583,257 - QEN71_RS02600 0.85 -0.2
583,257 - QEN71_RS02600 0.85 -0.6
583,369 + -0.0
583,370 - +1.6
583,697 + QEN71_RS02605 0.45 -1.2
583,732 + QEN71_RS02605 0.50 -1.0
583,732 + QEN71_RS02605 0.50 -0.9
583,733 - QEN71_RS02605 0.50 -1.5
583,733 - QEN71_RS02605 0.50 -1.7
583,755 + QEN71_RS02605 0.53 +0.2
583,755 + QEN71_RS02605 0.53 +1.0
583,755 + QEN71_RS02605 0.53 -0.9
583,756 - QEN71_RS02605 0.53 -0.0
583,834 + QEN71_RS02605 0.65 +0.6
583,834 + QEN71_RS02605 0.65 +0.3
583,834 + QEN71_RS02605 0.65 -0.3
583,835 - QEN71_RS02605 0.65 +0.8
583,835 - QEN71_RS02605 0.65 -0.7
583,835 - QEN71_RS02605 0.65 -0.6
583,939 + QEN71_RS02605 0.80 +0.3
583,939 + QEN71_RS02605 0.80 -0.1
583,940 - QEN71_RS02605 0.80 -0.5
583,940 - QEN71_RS02605 0.80 -0.1
583,940 - QEN71_RS02605 0.80 -1.8
583,940 - QEN71_RS02605 0.80 -0.8
583,940 - QEN71_RS02605 0.80 -0.0
583,940 - QEN71_RS02605 0.80 -0.1
583,940 - QEN71_RS02605 0.80 -0.6
583,948 - QEN71_RS02605 0.81 -0.3
584,012 + -1.0
584,012 + +0.6
584,012 + -0.6
584,012 + -0.9
584,012 + -1.0
584,012 + +0.3
584,012 + +0.6
584,013 - -0.1
584,013 - -0.3
584,013 - +0.2
584,013 - +0.5
584,013 - -0.3
584,013 - +1.0
584,013 - -1.5
584,013 - -0.0
584,013 - -0.8
584,013 - -1.0
584,077 + +0.4
584,077 + +1.0
584,077 + -0.9
584,077 + -0.7
584,077 + -2.0
584,078 - +0.4
584,078 - +0.2
584,118 + -1.4
584,118 + -0.4
584,118 + -0.8
584,118 + -0.4
584,119 - -0.2
584,119 - -1.6
584,119 - -0.5
584,119 - +0.1
584,119 - -0.3
584,119 - -0.0
584,119 - -0.6
584,129 + +0.4
584,129 + -1.0
584,130 - +0.5
584,130 - -1.2
584,153 + -0.4

Or see this region's nucleotide sequence