Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04194 and MIT1002_04195 are separated by 115 nucleotides MIT1002_04195 and MIT1002_04196 are separated by 465 nucleotides MIT1002_04196 and MIT1002_04197 are separated by 199 nucleotides
MIT1002_04194: MIT1002_04194 - hypothetical protein, at 54,265 to 54,693
_04194
MIT1002_04195: MIT1002_04195 - hypothetical protein, at 54,809 to 55,162
_04195
MIT1002_04196: MIT1002_04196 - Transposase IS116/IS110/IS902 family protein, at 55,628 to 56,674
_04196
MIT1002_04197: MIT1002_04197 - hypothetical protein, at 56,874 to 57,230
_04197
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.742 kb on - strand at 54.770 kb on - strand at 54.850 kb on + strand, within MIT1002_04195 at 54.858 kb on - strand, within MIT1002_04195 at 54.950 kb on - strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.040 kb on + strand, within MIT1002_04195 at 55.058 kb on - strand, within MIT1002_04195 at 55.089 kb on + strand, within MIT1002_04195 at 55.146 kb on - strand at 55.151 kb on - strand at 55.165 kb on - strand at 55.170 kb on - strand at 55.172 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.258 kb on - strand at 55.276 kb on + strand at 55.284 kb on - strand at 55.294 kb on + strand at 55.356 kb on + strand at 55.364 kb on - strand at 55.409 kb on - strand at 55.416 kb on - strand at 55.432 kb on + strand at 55.440 kb on - strand at 55.440 kb on - strand at 55.448 kb on + strand at 55.483 kb on - strand at 55.491 kb on + strand at 55.527 kb on + strand at 55.529 kb on + strand at 55.533 kb on - strand at 55.582 kb on - strand at 55.612 kb on + strand at 55.625 kb on + strand at 55.625 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.658 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.758 kb on + strand, within MIT1002_04196 at 55.776 kb on + strand, within MIT1002_04196 at 55.811 kb on - strand, within MIT1002_04196 at 55.818 kb on + strand, within MIT1002_04196 at 55.826 kb on - strand, within MIT1002_04196 at 55.826 kb on - strand, within MIT1002_04196 at 55.826 kb on - strand, within MIT1002_04196 at 55.850 kb on - strand, within MIT1002_04196 at 55.857 kb on + strand, within MIT1002_04196 at 55.865 kb on - strand, within MIT1002_04196 at 55.865 kb on - strand, within MIT1002_04196 at 55.916 kb on + strand, within MIT1002_04196 at 55.916 kb on + strand, within MIT1002_04196 at 55.924 kb on - strand, within MIT1002_04196 at 55.924 kb on - strand, within MIT1002_04196 at 55.924 kb on - strand, within MIT1002_04196 at 55.926 kb on + strand, within MIT1002_04196 at 55.929 kb on - strand, within MIT1002_04196 at 55.934 kb on + strand, within MIT1002_04196 at 55.934 kb on - strand, within MIT1002_04196 at 55.942 kb on - strand, within MIT1002_04196 at 55.944 kb on + strand, within MIT1002_04196 at 55.944 kb on - strand, within MIT1002_04196 at 55.970 kb on + strand, within MIT1002_04196 at 55.978 kb on - strand, within MIT1002_04196 at 55.978 kb on - strand, within MIT1002_04196 at 55.978 kb on - strand, within MIT1002_04196 at 56.103 kb on - strand, within MIT1002_04196 at 56.118 kb on + strand, within MIT1002_04196 at 56.126 kb on - strand, within MIT1002_04196 at 56.176 kb on - strand, within MIT1002_04196 at 56.177 kb on - strand, within MIT1002_04196 at 56.208 kb on + strand, within MIT1002_04196 at 56.212 kb on - strand, within MIT1002_04196 at 56.255 kb on + strand, within MIT1002_04196 at 56.310 kb on + strand, within MIT1002_04196 at 56.324 kb on - strand, within MIT1002_04196 at 56.411 kb on + strand, within MIT1002_04196 at 56.419 kb on - strand, within MIT1002_04196 at 56.421 kb on + strand, within MIT1002_04196 at 56.452 kb on - strand, within MIT1002_04196 at 56.452 kb on - strand, within MIT1002_04196 at 56.492 kb on - strand, within MIT1002_04196 at 56.501 kb on + strand, within MIT1002_04196 at 56.503 kb on + strand, within MIT1002_04196 at 56.533 kb on + strand, within MIT1002_04196 at 56.534 kb on - strand, within MIT1002_04196 at 56.542 kb on - strand, within MIT1002_04196 at 56.542 kb on - strand, within MIT1002_04196 at 56.542 kb on - strand, within MIT1002_04196 at 56.545 kb on + strand, within MIT1002_04196 at 56.545 kb on + strand, within MIT1002_04196 at 56.564 kb on - strand, within MIT1002_04196 at 56.637 kb on - strand at 56.703 kb on + strand at 56.703 kb on + strand at 56.738 kb on + strand at 56.915 kb on - strand, within MIT1002_04197 at 56.918 kb on + strand, within MIT1002_04197 at 56.918 kb on + strand, within MIT1002_04197 at 56.918 kb on + strand, within MIT1002_04197 at 56.926 kb on - strand, within MIT1002_04197 at 56.926 kb on - strand, within MIT1002_04197 at 56.926 kb on - strand, within MIT1002_04197 at 57.033 kb on + strand, within MIT1002_04197 at 57.065 kb on + strand, within MIT1002_04197 at 57.066 kb on + strand, within MIT1002_04197 at 57.073 kb on - strand, within MIT1002_04197 at 57.073 kb on - strand, within MIT1002_04197 at 57.073 kb on - strand, within MIT1002_04197 at 57.100 kb on + strand, within MIT1002_04197 at 57.100 kb on + strand, within MIT1002_04197 at 57.100 kb on + strand, within MIT1002_04197 at 57.108 kb on - strand, within MIT1002_04197 at 57.108 kb on - strand, within MIT1002_04197 at 57.172 kb on + strand, within MIT1002_04197 at 57.173 kb on + strand, within MIT1002_04197 at 57.187 kb on - strand, within MIT1002_04197 at 57.307 kb on - strand at 57.326 kb on - strand at 57.357 kb on - strand at 57.373 kb on + strand at 57.499 kb on + strand at 57.499 kb on + strand at 57.499 kb on + strand at 57.513 kb on - strand at 57.522 kb on + strand at 57.533 kb on - strand at 57.540 kb on + strand at 57.548 kb on - strand at 57.589 kb on + strand at 57.595 kb on - strand at 57.597 kb on - strand at 57.597 kb on - strand at 57.599 kb on + strand at 57.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6 remove 54,742 - -0.1 54,770 - +1.2 54,850 + MIT1002_04195 0.12 -1.2 54,858 - MIT1002_04195 0.14 -1.0 54,950 - MIT1002_04195 0.40 +1.9 55,034 + MIT1002_04195 0.64 +0.3 55,034 + MIT1002_04195 0.64 +0.8 55,034 + MIT1002_04195 0.64 +1.3 55,034 + MIT1002_04195 0.64 -0.4 55,040 + MIT1002_04195 0.65 -1.9 55,058 - MIT1002_04195 0.70 -1.7 55,089 + MIT1002_04195 0.79 +1.4 55,146 - -0.6 55,151 - -1.7 55,165 - -2.0 55,170 - -0.0 55,172 + -0.7 55,224 + +0.5 55,224 + -0.0 55,224 + +0.5 55,224 + -2.5 55,232 - -0.3 55,232 - +1.0 55,232 - -0.8 55,258 - -1.2 55,276 + -1.1 55,284 - -2.6 55,294 + -0.9 55,356 + -0.7 55,364 - -1.4 55,409 - -0.6 55,416 - +0.0 55,432 + +0.5 55,440 - -0.0 55,440 - +1.3 55,448 + +0.1 55,483 - -0.4 55,491 + +0.7 55,527 + +1.3 55,529 + -0.0 55,533 - +0.5 55,582 - -0.5 55,612 + +0.1 55,625 + -0.0 55,625 + -0.9 55,652 + -2.2 55,652 + -0.6 55,652 + -0.2 55,652 + -0.3 55,652 + +2.1 55,658 - -1.8 55,660 - +0.4 55,660 - -0.4 55,660 - +1.1 55,660 - +0.8 55,660 - -0.4 55,660 - -0.3 55,660 - +0.2 55,660 - +0.5 55,660 - -0.6 55,660 - -0.8 55,758 + MIT1002_04196 0.12 -0.5 55,776 + MIT1002_04196 0.14 -0.2 55,811 - MIT1002_04196 0.17 -0.5 55,818 + MIT1002_04196 0.18 +0.7 55,826 - MIT1002_04196 0.19 +1.7 55,826 - MIT1002_04196 0.19 -0.1 55,826 - MIT1002_04196 0.19 -0.0 55,850 - MIT1002_04196 0.21 +0.1 55,857 + MIT1002_04196 0.22 +1.2 55,865 - MIT1002_04196 0.23 -0.1 55,865 - MIT1002_04196 0.23 -0.1 55,916 + MIT1002_04196 0.28 -0.3 55,916 + MIT1002_04196 0.28 -1.5 55,924 - MIT1002_04196 0.28 +1.4 55,924 - MIT1002_04196 0.28 +1.6 55,924 - MIT1002_04196 0.28 -0.0 55,926 + MIT1002_04196 0.28 +1.8 55,929 - MIT1002_04196 0.29 -1.8 55,934 + MIT1002_04196 0.29 -1.4 55,934 - MIT1002_04196 0.29 -0.1 55,942 - MIT1002_04196 0.30 +0.4 55,944 + MIT1002_04196 0.30 -0.6 55,944 - MIT1002_04196 0.30 -0.2 55,970 + MIT1002_04196 0.33 -0.3 55,978 - MIT1002_04196 0.33 -1.5 55,978 - MIT1002_04196 0.33 -0.8 55,978 - MIT1002_04196 0.33 +0.3 56,103 - MIT1002_04196 0.45 +0.9 56,118 + MIT1002_04196 0.47 -0.1 56,126 - MIT1002_04196 0.48 -0.1 56,176 - MIT1002_04196 0.52 -0.0 56,177 - MIT1002_04196 0.52 +1.3 56,208 + MIT1002_04196 0.55 +1.7 56,212 - MIT1002_04196 0.56 +0.1 56,255 + MIT1002_04196 0.60 +0.9 56,310 + MIT1002_04196 0.65 +0.5 56,324 - MIT1002_04196 0.66 +0.2 56,411 + MIT1002_04196 0.75 +0.1 56,419 - MIT1002_04196 0.76 -0.2 56,421 + MIT1002_04196 0.76 +1.2 56,452 - MIT1002_04196 0.79 +1.0 56,452 - MIT1002_04196 0.79 +0.9 56,492 - MIT1002_04196 0.83 +0.3 56,501 + MIT1002_04196 0.83 -0.9 56,503 + MIT1002_04196 0.84 +0.3 56,533 + MIT1002_04196 0.86 +0.9 56,534 - MIT1002_04196 0.87 -0.3 56,542 - MIT1002_04196 0.87 +0.4 56,542 - MIT1002_04196 0.87 +1.3 56,542 - MIT1002_04196 0.87 -0.6 56,545 + MIT1002_04196 0.88 -0.6 56,545 + MIT1002_04196 0.88 +0.6 56,564 - MIT1002_04196 0.89 -0.3 56,637 - -2.3 56,703 + +0.3 56,703 + -1.7 56,738 + +0.3 56,915 - MIT1002_04197 0.11 +1.1 56,918 + MIT1002_04197 0.12 -0.5 56,918 + MIT1002_04197 0.12 +0.2 56,918 + MIT1002_04197 0.12 +0.2 56,926 - MIT1002_04197 0.15 +0.8 56,926 - MIT1002_04197 0.15 -0.0 56,926 - MIT1002_04197 0.15 +0.1 57,033 + MIT1002_04197 0.45 +0.1 57,065 + MIT1002_04197 0.54 +0.6 57,066 + MIT1002_04197 0.54 +0.2 57,073 - MIT1002_04197 0.56 -0.9 57,073 - MIT1002_04197 0.56 +1.6 57,073 - MIT1002_04197 0.56 -1.3 57,100 + MIT1002_04197 0.63 +1.8 57,100 + MIT1002_04197 0.63 -0.7 57,100 + MIT1002_04197 0.63 +1.3 57,108 - MIT1002_04197 0.66 +2.0 57,108 - MIT1002_04197 0.66 -0.5 57,172 + MIT1002_04197 0.83 +0.4 57,173 + MIT1002_04197 0.84 -0.0 57,187 - MIT1002_04197 0.88 -0.1 57,307 - +0.4 57,326 - -0.6 57,357 - -0.2 57,373 + -3.2 57,499 + -0.3 57,499 + +1.7 57,499 + +0.3 57,513 - +1.9 57,522 + -1.8 57,533 - -1.0 57,540 + +0.6 57,548 - -0.4 57,589 + -0.9 57,595 - +1.2 57,597 - -0.2 57,597 - -0.2 57,599 + -0.0 57,641 - -0.4
Or see this region's nucleotide sequence