Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04137

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
2,260	-				+1.8
2,260	-				+1.3
2,275	+				+1.0
2,275	+				-0.7
2,283	-				-0.3
2,297	-				+0.4
2,301	+				-1.3
2,447	-				+0.7
2,519	-				+1.3
2,521	+				+0.5
2,529	-				+0.4
2,529	-				+1.8
2,534	+				+0.1
2,537	-				+0.5
2,538	-				-0.1
2,539	+				-0.6
2,542	-				-0.5
2,547	-				-1.5
2,554	-				-1.2
2,569	+				-2.1
2,577	-				+1.1
2,608	+				+0.8
2,609	-				-1.4
2,616	+				+0.2
2,616	+				-0.9
2,616	-				+0.3
2,623	+				+0.6
2,623	+				+0.3
2,624	-				-0.9
2,624	-				+0.5
2,624	-				+0.3
2,630	-				-1.0
2,630	-				+2.3
2,631	-				-1.1
2,667	+				+0.3
2,744	-		MIT1002_04136	0.21	-0.5
2,748	+		MIT1002_04136	0.23	-2.4
2,756	-		MIT1002_04136	0.28	+0.2
2,783	+		MIT1002_04136	0.43	-3.3
2,783	-		MIT1002_04136	0.43	+0.2
2,791	+		MIT1002_04136	0.47	+0.4
2,793	-		MIT1002_04136	0.48	+1.0
2,793	-		MIT1002_04136	0.48	-0.2
2,798	-		MIT1002_04136	0.51	-0.1
2,812	+		MIT1002_04136	0.58	-0.2
2,812	+		MIT1002_04136	0.58	-2.1
2,812	+		MIT1002_04136	0.58	+0.5
2,817	+		MIT1002_04136	0.61	-1.4
2,820	-		MIT1002_04136	0.63	-0.7
2,825	-		MIT1002_04136	0.66	-0.6
2,854	+		MIT1002_04136	0.81	+1.3
2,854	+		MIT1002_04136	0.81	+1.7
2,854	+		MIT1002_04136	0.81	+0.8
2,854	+		MIT1002_04136	0.81	-0.5
2,862	-		MIT1002_04136	0.86	-0.3
2,862	-		MIT1002_04136	0.86	-1.6
2,862	-		MIT1002_04136	0.86	-0.7
2,862	-		MIT1002_04136	0.86	+0.1
2,862	-		MIT1002_04136	0.86	+0.7
2,862	-		MIT1002_04136	0.86	-0.8
2,922	+				-0.7
2,936	+				-0.4
2,936	+				+1.6
2,944	-				+0.3
2,944	-				-0.9
2,944	-				-0.7
2,972	+				-2.8
2,985	-				+0.9
2,985	-				-0.7
2,985	-				+0.0
2,985	-				-0.7
2,985	-				-0.4
2,985	-				-1.2
2,985	-				+1.3
3,018	+				+2.2
3,018	+				-0.2
3,018	+				-1.3
3,035	+				-0.7
3,059	+				+1.4
3,064	+				-1.9
3,064	+				-0.8
3,122	-				-0.1
3,125	-				-1.0
3,142	+				+0.2
3,186	+				-1.1
3,187	-				-1.1
3,196	-				+0.6
3,202	-				+0.1
3,217	+				+0.6
3,217	+				+0.1
3,225	-				-0.9
3,225	-				-0.7
3,225	-				-0.5
3,225	-				+0.5
3,230	-				+0.1
3,257	-				-1.9
3,325	-				+1.0
3,333	-		MIT1002_04137	0.10	-0.7
3,340	-		MIT1002_04137	0.11	-1.8
3,401	+		MIT1002_04137	0.19	+1.2
3,437	+		MIT1002_04137	0.24	+0.0
3,437	+		MIT1002_04137	0.24	+1.5
3,437	-		MIT1002_04137	0.24	+1.7
3,445	-		MIT1002_04137	0.25	-3.1
3,445	-		MIT1002_04137	0.25	+3.7
3,445	-		MIT1002_04137	0.25	+1.3
3,452	+		MIT1002_04137	0.26	+1.0
3,455	-		MIT1002_04137	0.27	-1.9
3,522	+		MIT1002_04137	0.36	+0.4
3,522	+		MIT1002_04137	0.36	+0.4
3,530	-		MIT1002_04137	0.37	+0.6
3,557	+		MIT1002_04137	0.41	-1.3
3,583	-		MIT1002_04137	0.44	-0.5
3,583	-		MIT1002_04137	0.44	+0.2
3,634	+		MIT1002_04137	0.51	+1.0
3,634	+		MIT1002_04137	0.51	+0.3
3,634	+		MIT1002_04137	0.51	+0.7
3,634	+		MIT1002_04137	0.51	+0.4
3,634	+		MIT1002_04137	0.51	-0.4
3,642	-		MIT1002_04137	0.52	-1.6
3,642	-		MIT1002_04137	0.52	-1.1
3,661	-		MIT1002_04137	0.55	-1.2
3,663	-		MIT1002_04137	0.55	-0.0
3,702	+		MIT1002_04137	0.60	-0.8
3,710	+		MIT1002_04137	0.61	-1.1
3,757	-		MIT1002_04137	0.68	+1.9
3,801	+		MIT1002_04137	0.74	-0.4
3,801	+		MIT1002_04137	0.74	+0.8
3,801	+		MIT1002_04137	0.74	-0.4
3,801	+		MIT1002_04137	0.74	-0.4
3,809	+		MIT1002_04137	0.75	-1.1
3,809	+		MIT1002_04137	0.75	+0.3
3,809	-		MIT1002_04137	0.75	-0.4
3,817	+		MIT1002_04137	0.76	-0.6
3,817	-		MIT1002_04137	0.76	+0.3
3,817	-		MIT1002_04137	0.76	+1.7
3,817	-		MIT1002_04137	0.76	-0.1
3,852	+		MIT1002_04137	0.81	-0.8
3,906	-		MIT1002_04137	0.88	-1.5
3,914	-		MIT1002_04137	0.89	+0.7
3,915	-		MIT1002_04137	0.89	-0.1
3,928	+				-0.4
3,936	-				+1.4
3,943	+				+0.3
3,973	+				-0.6
4,079	-		MIT1002_04138	0.13	-0.7
4,107	+		MIT1002_04138	0.26	-0.7
4,111	-		MIT1002_04138	0.28	-0.7
4,115	-		MIT1002_04138	0.30	-0.2
4,122	-		MIT1002_04138	0.33	+0.3
4,122	-		MIT1002_04138	0.33	-1.1
4,123	-		MIT1002_04138	0.33	+0.8
4,133	+		MIT1002_04138	0.38	-0.7
4,133	-		MIT1002_04138	0.38	+1.3
4,140	+		MIT1002_04138	0.41	+1.1
4,141	-		MIT1002_04138	0.42	+1.0
4,141	-		MIT1002_04138	0.42	+0.2
4,199	-		MIT1002_04138	0.68	+0.5
4,226	+		MIT1002_04138	0.80	-0.6
4,229	+		MIT1002_04138	0.82	-0.5
4,229	+		MIT1002_04138	0.82	+0.0
4,229	+		MIT1002_04138	0.82	+0.3
4,231	+		MIT1002_04138	0.83	+0.1
4,231	+		MIT1002_04138	0.83	-0.5
4,231	+		MIT1002_04138	0.83	+0.9
4,234	-		MIT1002_04138	0.84	+1.0
4,237	-		MIT1002_04138	0.85	+0.1
4,237	-		MIT1002_04138	0.85	-0.8
4,239	-		MIT1002_04138	0.86	-0.2
4,239	-		MIT1002_04138	0.86	-1.1
4,239	-		MIT1002_04138	0.86	+2.1
4,239	-		MIT1002_04138	0.86	+0.6
4,239	-		MIT1002_04138	0.86	+0.9
4,239	-		MIT1002_04138	0.86	-0.1
4,239	-		MIT1002_04138	0.86	+0.6
4,239	-		MIT1002_04138	0.86	+1.4
4,250	+				+0.9
4,293	-				+1.2
4,396	+		MIT1002_04139	0.24	+0.9
4,396	+		MIT1002_04139	0.24	+0.9
4,396	+		MIT1002_04139	0.24	-0.0
4,396	+		MIT1002_04139	0.24	-0.4
4,396	+		MIT1002_04139	0.24	+1.0
4,396	+		MIT1002_04139	0.24	-0.3
4,396	+		MIT1002_04139	0.24	+0.1
4,404	-		MIT1002_04139	0.26	+0.6
4,404	-		MIT1002_04139	0.26	+1.8
4,404	-		MIT1002_04139	0.26	-0.5
4,404	-		MIT1002_04139	0.26	+1.3
4,404	-		MIT1002_04139	0.26	-2.7
4,418	-		MIT1002_04139	0.28	-0.7
4,425	+		MIT1002_04139	0.30	+0.9
4,430	+		MIT1002_04139	0.31	+0.2
4,474	+		MIT1002_04139	0.39	+1.0
4,485	+		MIT1002_04139	0.42	+1.9
4,493	-		MIT1002_04139	0.43	+4.0
4,506	+		MIT1002_04139	0.46	+0.2
4,514	-		MIT1002_04139	0.47	-0.4
4,535	+		MIT1002_04139	0.51	+0.6
4,575	-		MIT1002_04139	0.59	-1.4
4,591	+		MIT1002_04139	0.62	-1.4
4,654	+		MIT1002_04139	0.74	+0.3
4,752	-				-0.9
4,752	-				-2.8
4,820	+				+0.6
4,827	+				-0.9
4,828	-				-1.0
4,828	-				-0.7
4,843	+				+0.1
4,868	+				+0.7
4,868	-				-0.3
4,882	+				-1.0
4,882	+				+0.7
4,882	+				+0.3
4,882	+				+0.8
4,884	-				+0.3
4,887	+				+0.5
4,887	+				-1.0
4,890	-				-0.5
4,890	-				-0.5
4,890	-				+1.2
4,890	-				+0.9
4,890	-				-0.3
4,890	-				+0.5
4,890	-				+0.3
4,895	-				+0.6
4,911	+				+0.6
4,956	-				-0.6
4,980	-				-0.6
4,982	-				-0.9